RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 CALD1Q05682 793 aaKnown RBP15.21■□□□□ 0.03
CLIP3-204ENST00000590559 GOLGA2Q08379 1002 aa15.21■□□□□ 0.03
CLIP3-204ENST00000590559 SAMD7Q7Z3H4 446 aa15.21■□□□□ 0.03
CLIP3-204ENST00000590559 SPEF2Q9C093 1822 aa15.21■□□□□ 0.03
CLIP3-204ENST00000590559 C6orf229H3BNL8 230 aa15.2■□□□□ 0.02
CLIP3-204ENST00000590559 ELL2O00472 640 aaPredicted RBP15.2■□□□□ 0.02
CLIP3-204ENST00000590559 VIL1P09327 827 aaKnown RBP15.2■□□□□ 0.02
CLIP3-204ENST00000590559 DLK2Q6UY11 383 aa15.2■□□□□ 0.02
CLIP3-204ENST00000590559 EYA3Q99504 573 aa15.2■□□□□ 0.02
CLIP3-204ENST00000590559 MYD88Q99836 296 aa15.2■□□□□ 0.02
CLIP3-204ENST00000590559 METTL22Q9BUU2 404 aaPredicted RBP15.2■□□□□ 0.02
CLIP3-204ENST00000590559 CACNA1FO60840 1977 aa15.19■□□□□ 0.02
CLIP3-204ENST00000590559 CASP8AP2Q9UKL3 1982 aa15.19■□□□□ 0.02
CLIP3-204ENST00000590559 PDE8AO60658 829 aa15.19■□□□□ 0.02
CLIP3-204ENST00000590559 BRPF1P55201 1214 aaPredicted RBP15.19■□□□□ 0.02
CLIP3-204ENST00000590559 DOK7Q18PE1 504 aa15.19■□□□□ 0.02
CLIP3-204ENST00000590559 PAXIP1Q6ZW49 1069 aaPredicted RBP15.19■□□□□ 0.02
CLIP3-204ENST00000590559 USP48Q86UV5 1035 aa15.19■□□□□ 0.02
CLIP3-204ENST00000590559 TSPYL6Q8N831 410 aa15.19■□□□□ 0.02
CLIP3-204ENST00000590559 HSP90B1P14625 803 aaKnown RBP15.18■□□□□ 0.02
CLIP3-204ENST00000590559 TBC1D10BQ4KMP7 808 aaPredicted RBP15.18■□□□□ 0.02
CLIP3-204ENST00000590559 ABHD8Q96I13 439 aa15.18■□□□□ 0.02
CLIP3-204ENST00000590559 CWC25Q9NXE8 425 aaPredicted RBP15.18■□□□□ 0.02
CLIP3-204ENST00000590559 FAM155AB1AL88 458 aaPredicted RBP15.17■□□□□ 0.02
CLIP3-204ENST00000590559 IGKV5-2P06315 115 aa15.17■□□□□ 0.02
CLIP3-204ENST00000590559 GRM1Q13255 1194 aa15.17■□□□□ 0.02
CLIP3-204ENST00000590559 CCDC152Q4G0S7 254 aa15.17■□□□□ 0.02
CLIP3-204ENST00000590559 CCDC30Q5VVM6 783 aa15.17■□□□□ 0.02
CLIP3-204ENST00000590559 ZIC5Q96T25 663 aa15.17■□□□□ 0.02
CLIP3-204ENST00000590559 GMLQ99445 158 aa15.17■□□□□ 0.02
CLIP3-204ENST00000590559 ZC3H12CQ9C0D7 883 aaKnown RBP15.17■□□□□ 0.02
CLIP3-204ENST00000590559 CA12O43570 354 aa15.16■□□□□ 0.02
CLIP3-204ENST00000590559 UFL1O94874 794 aa15.16■□□□□ 0.02
CLIP3-204ENST00000590559 ZNF280AP59817 542 aaPredicted RBP15.16■□□□□ 0.02
CLIP3-204ENST00000590559 CCDC27Q2M243 656 aa15.16■□□□□ 0.02
CLIP3-204ENST00000590559 CCDC184Q52MB2 194 aa15.16■□□□□ 0.02
CLIP3-204ENST00000590559 JARID2Q92833 1246 aaPredicted RBP15.16■□□□□ 0.02
CLIP3-204ENST00000590559 BEGAINQ9BUH8 593 aa15.16■□□□□ 0.02
CLIP3-204ENST00000590559 GGA1Q9UJY5 639 aa15.16■□□□□ 0.02
CLIP3-204ENST00000590559 MAP3K2Q9Y2U5 619 aa15.16■□□□□ 0.02
CLIP3-204ENST00000590559 DDX58O95786 925 aaKnown RBP15.15■□□□□ 0.02
CLIP3-204ENST00000590559 HUNKP57058 714 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 NOGQ13253 232 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 KSR2Q6VAB6 950 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 KRT26Q7Z3Y9 468 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 AGBL3Q8NEM8 1001 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 CHMP4AQ9BY43 222 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 ZNF408Q9H9D4 720 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 ANKIB1Q9P2G1 1089 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 TSKSQ9UJT2 592 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 AKAP11Q9UKA4 1901 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 XDHP47989 1333 aa15.15■□□□□ 0.02
CLIP3-204ENST00000590559 PI4KAP2A4QPH2 592 aa15.14■□□□□ 0.01
CLIP3-204ENST00000590559 WTIPA6NIX2 430 aaPredicted RBP15.14■□□□□ 0.01
CLIP3-204ENST00000590559 ADM5C9JUS6 153 aa15.14■□□□□ 0.01
CLIP3-204ENST00000590559 CTSWP56202 376 aa15.14■□□□□ 0.01
CLIP3-204ENST00000590559 KIF4BQ2VIQ3 1234 aa15.14■□□□□ 0.01
CLIP3-204ENST00000590559 RSBN1LQ6PCB5 846 aaPredicted RBP15.14■□□□□ 0.01
CLIP3-204ENST00000590559 PI4KAP1Q8N8J0 262 aa15.14■□□□□ 0.01
CLIP3-204ENST00000590559 TTLL11Q8NHH1 800 aa15.14■□□□□ 0.01
CLIP3-204ENST00000590559 ASTN2O75129 1339 aaPredicted RBP15.14■□□□□ 0.01
CLIP3-204ENST00000590559 NCBP3Q53F19 620 aaKnown RBP15.13■□□□□ 0.01
CLIP3-204ENST00000590559 ANKRD18AQ8IVF6 992 aa15.13■□□□□ 0.01
CLIP3-204ENST00000590559 TSR2Q969E8 191 aaKnown RBP15.13■□□□□ 0.01
CLIP3-204ENST00000590559 DCPSQ96C86 337 aaKnown RBP15.13■□□□□ 0.01
CLIP3-204ENST00000590559 CCDC85AQ96PX6 553 aaPredicted RBP15.13■□□□□ 0.01
CLIP3-204ENST00000590559 GBA2Q9HCG7 927 aaPredicted RBP15.13■□□□□ 0.01
CLIP3-204ENST00000590559 BSDC1Q9NW68 430 aaPredicted RBP15.13■□□□□ 0.01
CLIP3-204ENST00000590559 A0A1B0GUL6 1792 aa15.13■□□□□ 0.01
CLIP3-204ENST00000590559 MED23Q9ULK4 1368 aa15.12■□□□□ 0.01
CLIP3-204ENST00000590559 NEURL1BA8MQ27 555 aa15.12■□□□□ 0.01
CLIP3-204ENST00000590559 ATP2B4P23634 1241 aa15.12■□□□□ 0.01
CLIP3-204ENST00000590559 RGS19P49795 217 aa15.12■□□□□ 0.01
CLIP3-204ENST00000590559 RBM26Q5T8P6 1007 aaKnown RBP15.12■□□□□ 0.01
CLIP3-204ENST00000590559 RGMBQ6NW40 437 aa15.12■□□□□ 0.01
CLIP3-204ENST00000590559 G2E3Q7L622 706 aa15.12■□□□□ 0.01
CLIP3-204ENST00000590559 PODNQ7Z5L7 613 aa15.12■□□□□ 0.01
CLIP3-204ENST00000590559 WWC1Q8IX03 1113 aa15.12■□□□□ 0.01
CLIP3-204ENST00000590559 GGA3Q9NZ52 723 aa15.12■□□□□ 0.01
CLIP3-204ENST00000590559 MINPP1Q9UNW1 487 aa15.12■□□□□ 0.01
CLIP3-204ENST00000590559 PAPPA2Q9BXP8 1791 aa15.11■□□□□ 0.01
CLIP3-204ENST00000590559 H7C1W4 665 aa15.11■□□□□ 0.01
CLIP3-204ENST00000590559 CWF19L2Q2TBE0 894 aaKnown RBP15.11■□□□□ 0.01
CLIP3-204ENST00000590559 C2orf69Q8N8R5 385 aa15.11■□□□□ 0.01
CLIP3-204ENST00000590559 CDC5LQ99459 802 aaKnown RBP15.11■□□□□ 0.01
CLIP3-204ENST00000590559 GREM2Q9H772 168 aa15.11■□□□□ 0.01
CLIP3-204ENST00000590559 IL16Q14005 1332 aa15.11■□□□□ 0.01
CLIP3-204ENST00000590559 USP17L3A6NCW0 530 aa15.1■□□□□ 0.01
CLIP3-204ENST00000590559 USP17L4A6NCW7 530 aa15.1■□□□□ 0.01
CLIP3-204ENST00000590559 CASP7P55210 303 aa15.1■□□□□ 0.01
CLIP3-204ENST00000590559 SCARF1Q14162 830 aa15.1■□□□□ 0.01
CLIP3-204ENST00000590559 USP17L1Q7RTZ2 530 aa15.1■□□□□ 0.01
CLIP3-204ENST00000590559 CCDC102AQ96A19 550 aa15.1■□□□□ 0.01
CLIP3-204ENST00000590559 PLA2G12BQ9BX93 195 aa15.1■□□□□ 0.01
CLIP3-204ENST00000590559 PITPNM2Q9BZ72 1349 aa15.1■□□□□ 0.01
CLIP3-204ENST00000590559 SLC10A3P09131 477 aa15.09■□□□□ 0.01
CLIP3-204ENST00000590559 TWISTNBQ3B726 338 aaPredicted RBP15.09■□□□□ 0.01
CLIP3-204ENST00000590559 ANGEL2Q5VTE6 544 aaKnown RBP15.09■□□□□ 0.01
CLIP3-204ENST00000590559 SULF1Q8IWU6 871 aa15.09■□□□□ 0.01
CLIP3-204ENST00000590559 CDCA5Q96FF9 252 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms