RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 MPNDQ8N594 471 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 PI4KAP1Q8N8J0 262 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 FAM89AQ96GI7 184 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 MCOLN1Q9GZU1 580 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 ZNF408Q9H9D4 720 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 MAP3K2Q9Y2U5 619 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 RGS19P49795 217 aa13.39□□□□□ -0.27
LIG3-212ENST00000590181 BRPF1P55201 1214 aaPredicted RBP13.39□□□□□ -0.27
LIG3-212ENST00000590181 RPS8P62241 208 aaKnown RBP13.39□□□□□ -0.27
LIG3-212ENST00000590181 DPP8Q6V1X1 898 aaPredicted RBP13.39□□□□□ -0.27
LIG3-212ENST00000590181 MYD88Q99836 296 aa13.39□□□□□ -0.27
LIG3-212ENST00000590181 E9PSI1 815 aa13.38□□□□□ -0.27
LIG3-212ENST00000590181 CT47B1P0C2W7 299 aaPredicted RBP13.38□□□□□ -0.27
LIG3-212ENST00000590181 CXCL9Q07325 125 aa13.38□□□□□ -0.27
LIG3-212ENST00000590181 FLIIQ13045 1269 aa13.38□□□□□ -0.27
LIG3-212ENST00000590181 LINS1Q8NG48 757 aa13.38□□□□□ -0.27
LIG3-212ENST00000590181 HHIPL1Q96JK4 782 aa13.38□□□□□ -0.27
LIG3-212ENST00000590181 ZNRF3Q9ULT6 936 aa13.38□□□□□ -0.27
LIG3-212ENST00000590181 ZNF521Q96K83 1311 aa13.38□□□□□ -0.27
LIG3-212ENST00000590181 EXOSC9Q06265 439 aaKnown RBP13.37□□□□□ -0.27
LIG3-212ENST00000590181 DGKZQ13574 1117 aa13.37□□□□□ -0.27
LIG3-212ENST00000590181 TNIP1Q15025 636 aa13.37□□□□□ -0.27
LIG3-212ENST00000590181 CIAPIN1Q6FI81 312 aa13.37□□□□□ -0.27
LIG3-212ENST00000590181 TRPM4Q8TD43 1214 aa13.37□□□□□ -0.27
LIG3-212ENST00000590181 DNAAF4Q8WXU2 420 aa13.37□□□□□ -0.27
LIG3-212ENST00000590181 CDC5LQ99459 802 aaKnown RBP13.37□□□□□ -0.27
LIG3-212ENST00000590181 EYA3Q99504 573 aa13.37□□□□□ -0.27
LIG3-212ENST00000590181 BCL2L13Q9BXK5 485 aa13.37□□□□□ -0.27
LIG3-212ENST00000590181 POLR2AP24928 1970 aaKnown RBP13.37□□□□□ -0.27
LIG3-212ENST00000590181 PSME4Q14997 1843 aa13.36□□□□□ -0.27
LIG3-212ENST00000590181 RTL9Q8NET4 1388 aa13.36□□□□□ -0.27
LIG3-212ENST00000590181 KIAA2012Q0VF49 1180 aa13.36□□□□□ -0.27
LIG3-212ENST00000590181 FKBP5Q13451 457 aaPredicted RBP13.36□□□□□ -0.27
LIG3-212ENST00000590181 PLA2G12BQ9BX93 195 aa13.36□□□□□ -0.27
LIG3-212ENST00000590181 PODXL2Q9NZ53 605 aa13.36□□□□□ -0.27
LIG3-212ENST00000590181 MYH3P11055 1940 aa13.36□□□□□ -0.27
LIG3-212ENST00000590181 COL4A1P02462 1669 aa13.35□□□□□ -0.27
LIG3-212ENST00000590181 NEURL1BA8MQ27 555 aa13.35□□□□□ -0.27
LIG3-212ENST00000590181 H7C1W4 665 aa13.35□□□□□ -0.27
LIG3-212ENST00000590181 RAD17O75943 681 aa13.35□□□□□ -0.27
LIG3-212ENST00000590181 SCN9AQ15858 1988 aa13.34□□□□□ -0.27
LIG3-212ENST00000590181 IGKV5-2P06315 115 aa13.34□□□□□ -0.27
LIG3-212ENST00000590181 HUNKP57058 714 aa13.34□□□□□ -0.27
LIG3-212ENST00000590181 NOGQ13253 232 aa13.34□□□□□ -0.27
LIG3-212ENST00000590181 GCKRQ14397 625 aa13.34□□□□□ -0.27
LIG3-212ENST00000590181 WASHC4Q2M389 1173 aa13.34□□□□□ -0.27
LIG3-212ENST00000590181 ANKRD18AQ8IVF6 992 aa13.34□□□□□ -0.27
LIG3-212ENST00000590181 ZC3H15Q8WU90 426 aaKnown RBP13.34□□□□□ -0.27
LIG3-212ENST00000590181 PGAP2Q9UHJ9 254 aa13.34□□□□□ -0.27
LIG3-212ENST00000590181 SALL2Q9Y467 1007 aaPredicted RBP13.34□□□□□ -0.27
LIG3-212ENST00000590181 SHTN1A0MZ66 631 aa13.33□□□□□ -0.28
LIG3-212ENST00000590181 ALDH1L1O75891 902 aa13.33□□□□□ -0.28
LIG3-212ENST00000590181 MMP14P50281 582 aa13.33□□□□□ -0.28
LIG3-212ENST00000590181 HIRAP54198 1017 aaPredicted RBP13.33□□□□□ -0.28
LIG3-212ENST00000590181 CTSWP56202 376 aa13.33□□□□□ -0.28
LIG3-212ENST00000590181 CDC37L1Q7L3B6 337 aa13.33□□□□□ -0.28
LIG3-212ENST00000590181 MICALL2Q8IY33 904 aa13.33□□□□□ -0.28
LIG3-212ENST00000590181 BSDC1Q9NW68 430 aaPredicted RBP13.33□□□□□ -0.28
LIG3-212ENST00000590181 YDJCA8MPS7 323 aa13.32□□□□□ -0.28
LIG3-212ENST00000590181 ALDH1L2Q3SY69 923 aa13.32□□□□□ -0.28
LIG3-212ENST00000590181 TTLL11Q8NHH1 800 aa13.32□□□□□ -0.28
LIG3-212ENST00000590181 ZIC5Q96T25 663 aa13.32□□□□□ -0.28
LIG3-212ENST00000590181 NSFL1CQ9UNZ2 370 aaKnown RBP13.32□□□□□ -0.28
LIG3-212ENST00000590181 PTPRCP08575 1304 aa13.32□□□□□ -0.28
LIG3-212ENST00000590181 PAPPA2Q9BXP8 1791 aa13.31□□□□□ -0.28
LIG3-212ENST00000590181 SLFN5Q08AF3 891 aa13.31□□□□□ -0.28
LIG3-212ENST00000590181 USP48Q86UV5 1035 aa13.31□□□□□ -0.28
LIG3-212ENST00000590181 DPF2Q92785 391 aa13.31□□□□□ -0.28
LIG3-212ENST00000590181 CELF1Q92879 486 aaKnown RBP13.31□□□□□ -0.28
LIG3-212ENST00000590181 ZC3H12CQ9C0D7 883 aaKnown RBP13.31□□□□□ -0.28
LIG3-212ENST00000590181 ANKIB1Q9P2G1 1089 aa13.31□□□□□ -0.28
LIG3-212ENST00000590181 CNOT7Q9UIV1 285 aaKnown RBP13.31□□□□□ -0.28
LIG3-212ENST00000590181 SPEF2Q9C093 1822 aa13.31□□□□□ -0.28
LIG3-212ENST00000590181 H7C1D1 291 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 CSF1RP07333 972 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 ATP2B4P23634 1241 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 RPS12P25398 132 aaKnown RBP13.3□□□□□ -0.28
LIG3-212ENST00000590181 SOX10P56693 466 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 RTL5Q5HYW3 569 aaPredicted RBP13.3□□□□□ -0.28
LIG3-212ENST00000590181 DLK2Q6UY11 383 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 G2E3Q7L622 706 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 SPINK5Q9NQ38 1064 aaPredicted RBP13.3□□□□□ -0.28
LIG3-212ENST00000590181 SAGE1Q9NXZ1 904 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 PCDH10Q9P2E7 1040 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 GGA1Q9UJY5 639 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 HDAC5Q9UQL6 1122 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 XDHP47989 1333 aa13.3□□□□□ -0.28
LIG3-212ENST00000590181 ADM5C9JUS6 153 aa13.29□□□□□ -0.28
LIG3-212ENST00000590181 C6orf229H3BNL8 230 aa13.29□□□□□ -0.28
LIG3-212ENST00000590181 IGHMBP2P38935 993 aaKnown RBP13.29□□□□□ -0.28
LIG3-212ENST00000590181 CWF19L2Q2TBE0 894 aaKnown RBP13.29□□□□□ -0.28
LIG3-212ENST00000590181 BEND3Q5T5X7 828 aa13.29□□□□□ -0.28
LIG3-212ENST00000590181 UBE3BQ7Z3V4 1068 aa13.29□□□□□ -0.28
LIG3-212ENST00000590181 KRT26Q7Z3Y9 468 aa13.29□□□□□ -0.28
LIG3-212ENST00000590181 TRMT2AQ8IZ69 625 aaKnown RBP13.29□□□□□ -0.28
LIG3-212ENST00000590181 TBC1D16Q8TBP0 767 aa13.29□□□□□ -0.28
LIG3-212ENST00000590181 ANKRD2Q9GZV1 360 aa13.29□□□□□ -0.28
LIG3-212ENST00000590181 GBA2Q9HCG7 927 aaPredicted RBP13.29□□□□□ -0.28
LIG3-212ENST00000590181 ZBTB12Q9Y330 459 aaPredicted RBP13.29□□□□□ -0.28
LIG3-212ENST00000590181 ZNF646O15015 1829 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms