RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 GRIP2Q9C0E4 1043 aa8.03□□□□□ -1.12
SMAD4-208ENST00000589706 PLXNC1O60486 1568 aa8.02□□□□□ -1.13
SMAD4-208ENST00000589706 SETBP1Q9Y6X0 1596 aa8.02□□□□□ -1.13
SMAD4-208ENST00000589706 CDK12Q9NYV4 1490 aaPredicted RBP8.02□□□□□ -1.13
SMAD4-208ENST00000589706 TTC24A2A3L6 582 aaPredicted RBP8.02□□□□□ -1.13
SMAD4-208ENST00000589706 J3QL48 77 aa8.02□□□□□ -1.13
SMAD4-208ENST00000589706 GPC1P35052 558 aa8.02□□□□□ -1.13
SMAD4-208ENST00000589706 HNRNPMP52272 730 aaKnown RBP eCLIP8.02□□□□□ -1.13
SMAD4-208ENST00000589706 GNASQ5JWF2 1037 aa8.02□□□□□ -1.13
SMAD4-208ENST00000589706 SLC27A3Q5K4L6 730 aa8.02□□□□□ -1.13
SMAD4-208ENST00000589706 NUDT16Q96DE0 195 aaKnown RBP8.02□□□□□ -1.13
SMAD4-208ENST00000589706 FAM13BQ9NYF5 915 aa8.02□□□□□ -1.13
SMAD4-208ENST00000589706 CLIP1P30622 1438 aa8.02□□□□□ -1.13
SMAD4-208ENST00000589706 MIA2Q96PC5 1412 aa8.02□□□□□ -1.13
SMAD4-208ENST00000589706 LRP6O75581 1613 aa8.01□□□□□ -1.13
SMAD4-208ENST00000589706 C9orf131Q5VYM1 1079 aa8.01□□□□□ -1.13
SMAD4-208ENST00000589706 SREK1Q8WXA9 508 aaKnown RBP8.01□□□□□ -1.13
SMAD4-208ENST00000589706 PKNOX2Q96KN3 472 aa8.01□□□□□ -1.13
SMAD4-208ENST00000589706 DRC1Q96MC2 740 aa8.01□□□□□ -1.13
SMAD4-208ENST00000589706 GGNBP2Q9H3C7 697 aa8.01□□□□□ -1.13
SMAD4-208ENST00000589706 VTI1BQ9UEU0 232 aa8.01□□□□□ -1.13
SMAD4-208ENST00000589706 BCS1LQ9Y276 419 aa8.01□□□□□ -1.13
SMAD4-208ENST00000589706 SPATA31A6Q5VVP1 1343 aa8.01□□□□□ -1.13
SMAD4-208ENST00000589706 PHLPP1O60346 1717 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 NLRP1Q9C000 1473 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 PREX2Q70Z35 1606 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 ATP7AQ04656 1500 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 ZC3H13Q5T200 1668 aaKnown RBP8□□□□□ -1.13
SMAD4-208ENST00000589706 MICAL2O94851 1124 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 RPLP1P05386 114 aaKnown RBP8□□□□□ -1.13
SMAD4-208ENST00000589706 NEFLP07196 543 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 PLA2G4AP47712 749 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 RNF144AP50876 292 aaPredicted RBP8□□□□□ -1.13
SMAD4-208ENST00000589706 HIF1AQ16665 826 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 C8orf34Q49A92 452 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 C4orf17Q53FE4 359 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 NAALADL2Q58DX5 795 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 CYP4X1Q8N118 509 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 MEIOBQ8N635 442 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 TTC16Q8NEE8 873 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 FBF1Q8TES7 1133 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 CSRNP1Q96S65 589 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 PZPP20742 1482 aa8□□□□□ -1.13
SMAD4-208ENST00000589706 TMEM94Q12767 1356 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 KDM5DQ9BY66 1539 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 GDF9O60383 454 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 GNA15P30679 374 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 ORC1Q13415 861 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 NBPF1Q3BBV0 1214 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 RHPN1Q8TCX5 695 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 C7orf43Q8WVR3 580 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 AIDAQ96BJ3 306 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 CFHR5Q9BXR6 569 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 ZDHHC3Q9NYG2 299 aa7.99□□□□□ -1.13
SMAD4-208ENST00000589706 TGFBR3LH3BV60 316 aa7.98□□□□□ -1.13
SMAD4-208ENST00000589706 EIF1AYO14602 144 aaKnown RBP7.98□□□□□ -1.13
SMAD4-208ENST00000589706 METTL16Q86W50 562 aaKnown RBP7.98□□□□□ -1.13
SMAD4-208ENST00000589706 PIK3R5Q8WYR1 880 aa7.98□□□□□ -1.13
SMAD4-208ENST00000589706 INSM2Q96T92 566 aaPredicted RBP7.98□□□□□ -1.13
SMAD4-208ENST00000589706 TSEN34Q9BSV6 310 aaKnown RBP7.98□□□□□ -1.13
SMAD4-208ENST00000589706 DNAJC25Q9H1X3 360 aa7.98□□□□□ -1.13
SMAD4-208ENST00000589706 METTL5Q9NRN9 209 aaKnown RBP7.98□□□□□ -1.13
SMAD4-208ENST00000589706 SUPT16HQ9Y5B9 1047 aaKnown RBP7.98□□□□□ -1.13
SMAD4-208ENST00000589706 V9GY48 417 aaPredicted RBP7.98□□□□□ -1.13
SMAD4-208ENST00000589706 A6NHS1 94 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 SPATA31C2B4DYI2 1134 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 SMPD1P17405 629 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 LTKP29376 864 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 NT5DC4Q86YG4 428 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 RNF34Q969K3 372 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 SUSD3Q96L08 255 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 FRMD6Q96NE9 622 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 TOR4AQ9NXH8 423 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 SYCP2Q9BX26 1530 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 WASHC2CQ9Y4E1 1318 aa7.97□□□□□ -1.13
SMAD4-208ENST00000589706 LRRC9Q6ZRR7 1453 aa7.96□□□□□ -1.13
SMAD4-208ENST00000589706 OPLAHO14841 1288 aa7.96□□□□□ -1.14
SMAD4-208ENST00000589706 SPINT1O43278 529 aa7.96□□□□□ -1.14
SMAD4-208ENST00000589706 TATP17735 454 aaPredicted RBP7.96□□□□□ -1.14
SMAD4-208ENST00000589706 PHKA2P46019 1235 aa7.96□□□□□ -1.14
SMAD4-208ENST00000589706 FANCCQ00597 558 aa7.96□□□□□ -1.14
SMAD4-208ENST00000589706 RAD51AP2Q09MP3 1159 aa7.96□□□□□ -1.14
SMAD4-208ENST00000589706 IER5Q5VY09 327 aa7.96□□□□□ -1.14
SMAD4-208ENST00000589706 POLMQ9NP87 494 aaPredicted RBP7.96□□□□□ -1.14
SMAD4-208ENST00000589706 DMGDHQ9UI17 866 aaKnown RBP7.96□□□□□ -1.14
SMAD4-208ENST00000589706 GPC6Q9Y625 555 aaPredicted RBP7.96□□□□□ -1.14
SMAD4-208ENST00000589706 AK5Q9Y6K8 562 aa7.96□□□□□ -1.14
SMAD4-208ENST00000589706 INO80Q9ULG1 1556 aaPredicted RBP7.96□□□□□ -1.14
SMAD4-208ENST00000589706 ADGBQ8N7X0 1667 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 RGS12O14924 1447 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 CDC42BPAQ5VT25 1732 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 SCAF11Q99590 1463 aaKnown RBP7.95□□□□□ -1.14
SMAD4-208ENST00000589706 TNFRSF10AO00220 468 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 KIF3BO15066 747 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 CPNE3O75131 537 aaKnown RBP7.95□□□□□ -1.14
SMAD4-208ENST00000589706 ZNF76P36508 570 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 IDH3AP50213 366 aa7.95□□□□□ -1.14
SMAD4-208ENST00000589706 RBM6P78332 1123 aaKnown RBP7.95□□□□□ -1.14
SMAD4-208ENST00000589706 SF3A1Q15459 793 aaKnown RBP7.95□□□□□ -1.14
SMAD4-208ENST00000589706 ZNF280CQ8ND82 737 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms