RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 HDAC5Q9UQL6 1122 aa12.97□□□□□ -0.33
VPS4B-204ENST00000589604 SRGAP3O43295 1099 aa12.96□□□□□ -0.33
VPS4B-204ENST00000589604 FAM161AQ3B820 660 aa12.96□□□□□ -0.33
VPS4B-204ENST00000589604 LMBR1LQ6UX01 489 aa12.96□□□□□ -0.33
VPS4B-204ENST00000589604 CELF1Q92879 486 aaKnown RBP12.96□□□□□ -0.33
VPS4B-204ENST00000589604 PIM2Q9P1W9 311 aa12.96□□□□□ -0.33
VPS4B-204ENST00000589604 PRPF40BQ6NWY9 871 aaKnown RBP12.96□□□□□ -0.34
VPS4B-204ENST00000589604 C7orf43Q8WVR3 580 aa12.96□□□□□ -0.34
VPS4B-204ENST00000589604 RPGRQ92834 1020 aaKnown RBP12.96□□□□□ -0.34
VPS4B-204ENST00000589604 CRAMP1Q96RY5 1269 aa12.96□□□□□ -0.34
VPS4B-204ENST00000589604 ZNF219Q9P2Y4 722 aaPredicted RBP12.96□□□□□ -0.34
VPS4B-204ENST00000589604 EXOC6BQ9Y2D4 811 aa12.96□□□□□ -0.34
VPS4B-204ENST00000589604 NOP58Q9Y2X3 529 aaKnown RBP12.96□□□□□ -0.34
VPS4B-204ENST00000589604 SPEF2Q9C093 1822 aa12.95□□□□□ -0.34
VPS4B-204ENST00000589604 ARFGEF1Q9Y6D6 1849 aa12.95□□□□□ -0.34
VPS4B-204ENST00000589604 SMARCA5O60264 1052 aaPredicted RBP12.95□□□□□ -0.34
VPS4B-204ENST00000589604 RFX5P48382 616 aaPredicted RBP12.95□□□□□ -0.34
VPS4B-204ENST00000589604 TTLL6Q8N841 843 aa12.95□□□□□ -0.34
VPS4B-204ENST00000589604 BCS1LQ9Y276 419 aa12.95□□□□□ -0.34
VPS4B-204ENST00000589604 CCDC152Q4G0S7 254 aa12.94□□□□□ -0.34
VPS4B-204ENST00000589604 DALRD3Q5D0E6 543 aaKnown RBP12.94□□□□□ -0.34
VPS4B-204ENST00000589604 C16orf71Q8IYS4 520 aaPredicted RBP12.94□□□□□ -0.34
VPS4B-204ENST00000589604 SNED1Q8TER0 1413 aa12.94□□□□□ -0.34
VPS4B-204ENST00000589604 RBM17Q96I25 401 aaKnown RBP12.94□□□□□ -0.34
VPS4B-204ENST00000589604 RTL9Q8NET4 1388 aa12.94□□□□□ -0.34
VPS4B-204ENST00000589604 C21orf2O43822 256 aa12.93□□□□□ -0.34
VPS4B-204ENST00000589604 GRAPQ13588 217 aa12.93□□□□□ -0.34
VPS4B-204ENST00000589604 SAMD1Q6SPF0 538 aaPredicted RBP12.93□□□□□ -0.34
VPS4B-204ENST00000589604 DDX46Q7L014 1031 aaKnown RBP12.93□□□□□ -0.34
VPS4B-204ENST00000589604 GRAPLQ8TC17 118 aaPredicted RBP12.93□□□□□ -0.34
VPS4B-204ENST00000589604 ZNF594Q96JF6 807 aaPredicted RBP12.93□□□□□ -0.34
VPS4B-204ENST00000589604 PA2G4Q9UQ80 394 aaKnown RBP12.93□□□□□ -0.34
VPS4B-204ENST00000589604 LRRC37AA6NMS7 1700 aa12.93□□□□□ -0.34
VPS4B-204ENST00000589604 ITGA6P23229 1130 aa12.93□□□□□ -0.34
VPS4B-204ENST00000589604 KLHDC4Q8TBB5 520 aa12.93□□□□□ -0.34
VPS4B-204ENST00000589604 OTUD7AQ8TE49 926 aaPredicted RBP12.93□□□□□ -0.34
VPS4B-204ENST00000589604 CNKSR1Q969H4 720 aa12.93□□□□□ -0.34
VPS4B-204ENST00000589604 SALL3Q9BXA9 1300 aa12.92□□□□□ -0.34
VPS4B-204ENST00000589604 APBB1O00213 710 aa12.92□□□□□ -0.34
VPS4B-204ENST00000589604 PPEF1O14829 653 aaPredicted RBP12.92□□□□□ -0.34
VPS4B-204ENST00000589604 SURF6O75683 361 aaKnown RBP12.92□□□□□ -0.34
VPS4B-204ENST00000589604 ALDH1B1P30837 517 aa12.92□□□□□ -0.34
VPS4B-204ENST00000589604 PLEKHM2Q8IWE5 1019 aa12.92□□□□□ -0.34
VPS4B-204ENST00000589604 CHMP3Q9Y3E7 222 aa12.92□□□□□ -0.34
VPS4B-204ENST00000589604 WTIPA6NIX2 430 aaPredicted RBP12.91□□□□□ -0.34
VPS4B-204ENST00000589604 RAB11FIP3O75154 756 aa12.91□□□□□ -0.34
VPS4B-204ENST00000589604 HSP90B1P14625 803 aaKnown RBP12.91□□□□□ -0.34
VPS4B-204ENST00000589604 PRELPP51888 382 aa12.91□□□□□ -0.34
VPS4B-204ENST00000589604 RPS8P62241 208 aaKnown RBP12.91□□□□□ -0.34
VPS4B-204ENST00000589604 PTPN12Q05209 780 aaKnown RBP12.91□□□□□ -0.34
VPS4B-204ENST00000589604 FER1L6Q2WGJ9 1857 aa12.9□□□□□ -0.34
VPS4B-204ENST00000589604 GPR162Q16538 588 aa12.9□□□□□ -0.34
VPS4B-204ENST00000589604 C8orf34Q49A92 452 aa12.9□□□□□ -0.34
VPS4B-204ENST00000589604 RHPN1Q8TCX5 695 aa12.9□□□□□ -0.34
VPS4B-204ENST00000589604 BACH2Q9BYV9 841 aa12.9□□□□□ -0.34
VPS4B-204ENST00000589604 PUS3Q9BZE2 481 aaKnown RBP12.9□□□□□ -0.34
VPS4B-204ENST00000589604 LRRCC1Q9C099 1032 aa12.9□□□□□ -0.34
VPS4B-204ENST00000589604 COPRSQ9NQ92 184 aa12.9□□□□□ -0.34
VPS4B-204ENST00000589604 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.9□□□□□ -0.34
VPS4B-204ENST00000589604 LTBP1Q14766 1721 aa12.9□□□□□ -0.34
VPS4B-204ENST00000589604 DUOX1Q9NRD9 1551 aa12.9□□□□□ -0.34
VPS4B-204ENST00000589604 NFKBIEO00221 500 aa12.89□□□□□ -0.35
VPS4B-204ENST00000589604 SASH1O94885 1247 aa12.89□□□□□ -0.35
VPS4B-204ENST00000589604 ATP6V0A2Q9Y487 856 aa12.89□□□□□ -0.35
VPS4B-204ENST00000589604 A0A1B0GUL6 1792 aa12.89□□□□□ -0.35
VPS4B-204ENST00000589604 ANKRD18BA2A2Z9 1011 aa12.89□□□□□ -0.35
VPS4B-204ENST00000589604 BBOX1O75936 387 aa12.89□□□□□ -0.35
VPS4B-204ENST00000589604 IFIT5Q13325 482 aaKnown RBP12.89□□□□□ -0.35
VPS4B-204ENST00000589604 PODXL2Q9NZ53 605 aa12.89□□□□□ -0.35
VPS4B-204ENST00000589604 RASSF7Q02833 373 aa12.88□□□□□ -0.35
VPS4B-204ENST00000589604 LRRC24Q50LG9 513 aa12.88□□□□□ -0.35
VPS4B-204ENST00000589604 HSP90AB4PQ58FF6 505 aa12.88□□□□□ -0.35
VPS4B-204ENST00000589604 ANKRD18AQ8IVF6 992 aa12.88□□□□□ -0.35
VPS4B-204ENST00000589604 SP8Q8IXZ3 490 aa12.88□□□□□ -0.35
VPS4B-204ENST00000589604 KIF1BPQ96EK5 621 aa12.88□□□□□ -0.35
VPS4B-204ENST00000589604 CDC5LQ99459 802 aaKnown RBP12.88□□□□□ -0.35
VPS4B-204ENST00000589604 DCAF8L1A6NGE4 600 aa12.87□□□□□ -0.35
VPS4B-204ENST00000589604 GPSM2P81274 684 aa12.87□□□□□ -0.35
VPS4B-204ENST00000589604 CCDC57Q2TAC2 916 aa12.87□□□□□ -0.35
VPS4B-204ENST00000589604 OSBPL3Q9H4L5 887 aa12.87□□□□□ -0.35
VPS4B-204ENST00000589604 IL1RAPL2Q9NP60 686 aa12.87□□□□□ -0.35
VPS4B-204ENST00000589604 BSDC1Q9NW68 430 aaPredicted RBP12.87□□□□□ -0.35
VPS4B-204ENST00000589604 MINPP1Q9UNW1 487 aa12.87□□□□□ -0.35
VPS4B-204ENST00000589604 COL4A5P29400 1685 aa12.87□□□□□ -0.35
VPS4B-204ENST00000589604 SNAP23O00161 211 aa12.86□□□□□ -0.35
VPS4B-204ENST00000589604 ARHGAP27Q6ZUM4 889 aa12.86□□□□□ -0.35
VPS4B-204ENST00000589604 ATG9AQ7Z3C6 839 aa12.86□□□□□ -0.35
VPS4B-204ENST00000589604 GPR101Q96P66 508 aaPredicted RBP12.86□□□□□ -0.35
VPS4B-204ENST00000589604 STAP2Q9UGK3 403 aa12.86□□□□□ -0.35
VPS4B-204ENST00000589604 GSPT1P15170 499 aaKnown RBP12.86□□□□□ -0.35
VPS4B-204ENST00000589604 PDE1AP54750 535 aa12.86□□□□□ -0.35
VPS4B-204ENST00000589604 CCDC93Q567U6 631 aa12.86□□□□□ -0.35
VPS4B-204ENST00000589604 HELBQ8NG08 1087 aaPredicted RBP12.86□□□□□ -0.35
VPS4B-204ENST00000589604 SIL1Q9H173 461 aa12.86□□□□□ -0.35
VPS4B-204ENST00000589604 RIPOR2Q9Y4F9 1068 aa12.86□□□□□ -0.35
VPS4B-204ENST00000589604 SBF1O95248 1867 aa12.85□□□□□ -0.35
VPS4B-204ENST00000589604 IGHMBP2P38935 993 aaKnown RBP12.85□□□□□ -0.35
VPS4B-204ENST00000589604 G3BP1Q13283 466 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS4B-204ENST00000589604 BMP2KLQ5H9B9 411 aa12.85□□□□□ -0.35
VPS4B-204ENST00000589604 LDHAL6AQ6ZMR3 332 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms