RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 SRA1Q9HD15 236 aaKnown RBP7.08□□□□□ -1.28
VPS4B-203ENST00000588323 FAM69CQ0P6D2 419 aa7.07□□□□□ -1.28
VPS4B-203ENST00000588323 MAP4K3Q8IVH8 894 aa7.07□□□□□ -1.28
VPS4B-203ENST00000588323 PIK3R5Q8WYR1 880 aa7.07□□□□□ -1.28
VPS4B-203ENST00000588323 MRPL18Q9H0U6 180 aaKnown RBP7.07□□□□□ -1.28
VPS4B-203ENST00000588323 CXXC1Q9P0U4 656 aaPredicted RBP7.07□□□□□ -1.28
VPS4B-203ENST00000588323 UBAP1LF5GYI3 381 aa7.06□□□□□ -1.28
VPS4B-203ENST00000588323 TRIP4Q15650 581 aaPredicted RBP7.06□□□□□ -1.28
VPS4B-203ENST00000588323 CACTIN-AS1Q8N1I8 211 aa7.06□□□□□ -1.28
VPS4B-203ENST00000588323 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.05□□□□□ -1.28
VPS4B-203ENST00000588323 PTCD1O75127 700 aaKnown RBP7.05□□□□□ -1.28
VPS4B-203ENST00000588323 NAA30Q147X3 362 aaPredicted RBP7.05□□□□□ -1.28
VPS4B-203ENST00000588323 PRR23CQ6ZRP0 262 aa7.05□□□□□ -1.28
VPS4B-203ENST00000588323 TMEM130Q8N3G9 435 aa7.05□□□□□ -1.28
VPS4B-203ENST00000588323 OR13H1Q8NG92 308 aa7.05□□□□□ -1.28
VPS4B-203ENST00000588323 SPACA7Q96KW9 195 aa7.05□□□□□ -1.28
VPS4B-203ENST00000588323 MUC3BQ9H195 1237 aa7.05□□□□□ -1.28
VPS4B-203ENST00000588323 TRIM33Q9UPN9 1127 aa7.05□□□□□ -1.28
VPS4B-203ENST00000588323 FNDC3AQ9Y2H6 1198 aaKnown RBP7.05□□□□□ -1.28
VPS4B-203ENST00000588323 F8W735 103 aaPredicted RBP7.04□□□□□ -1.28
VPS4B-203ENST00000588323 TNFRSF10BO14763 440 aa7.04□□□□□ -1.28
VPS4B-203ENST00000588323 HYAL3O43820 417 aaPredicted RBP7.04□□□□□ -1.28
VPS4B-203ENST00000588323 ALX3O95076 343 aa7.04□□□□□ -1.28
VPS4B-203ENST00000588323 ZAP70P43403 619 aa7.04□□□□□ -1.28
VPS4B-203ENST00000588323 SETDB1Q15047 1291 aa7.04□□□□□ -1.28
VPS4B-203ENST00000588323 FAM26DQ5JW98 314 aa7.04□□□□□ -1.28
VPS4B-203ENST00000588323 TTC39BQ5VTQ0 682 aaPredicted RBP7.04□□□□□ -1.28
VPS4B-203ENST00000588323 CAPN12Q6ZSI9 719 aa7.04□□□□□ -1.28
VPS4B-203ENST00000588323 PPME1Q9Y570 386 aa7.04□□□□□ -1.28
VPS4B-203ENST00000588323 ATG7O95352 703 aa7.03□□□□□ -1.28
VPS4B-203ENST00000588323 HYAL2Q12891 473 aa7.03□□□□□ -1.28
VPS4B-203ENST00000588323 TMEM164Q5U3C3 297 aa7.03□□□□□ -1.28
VPS4B-203ENST00000588323 DZIP1LQ8IYY4 767 aaKnown RBP7.03□□□□□ -1.28
VPS4B-203ENST00000588323 SMNDC1O75940 238 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS4B-203ENST00000588323 SCNN1AP37088 669 aa7.02□□□□□ -1.29
VPS4B-203ENST00000588323 SRPK2P78362 688 aaKnown RBP7.02□□□□□ -1.29
VPS4B-203ENST00000588323 GPR152Q8TDT2 470 aa7.02□□□□□ -1.29
VPS4B-203ENST00000588323 STIM2Q9P246 746 aa7.02□□□□□ -1.29
VPS4B-203ENST00000588323 RNF112Q9ULX5 631 aa7.02□□□□□ -1.29
VPS4B-203ENST00000588323 ATP11AP98196 1134 aa7.01□□□□□ -1.29
VPS4B-203ENST00000588323 COL13A1Q5TAT6 717 aaPredicted RBP7.01□□□□□ -1.29
VPS4B-203ENST00000588323 CEP135Q66GS9 1140 aa7.01□□□□□ -1.29
VPS4B-203ENST00000588323 ABTB2Q8N961 1025 aa7.01□□□□□ -1.29
VPS4B-203ENST00000588323 LACRTQ9GZZ8 138 aa7.01□□□□□ -1.29
VPS4B-203ENST00000588323 LINC01387J3KSC0 135 aa7□□□□□ -1.29
VPS4B-203ENST00000588323 GLB1P16278 677 aa7□□□□□ -1.29
VPS4B-203ENST00000588323 FSTP19883 344 aa7□□□□□ -1.29
VPS4B-203ENST00000588323 CDC27P30260 824 aa7□□□□□ -1.29
VPS4B-203ENST00000588323 AGGF1Q8N302 714 aaeCLIP7□□□□□ -1.29
VPS4B-203ENST00000588323 CLP1Q92989 425 aaKnown RBP7□□□□□ -1.29
VPS4B-203ENST00000588323 Q6ZS46 218 aa6.99□□□□□ -1.29
VPS4B-203ENST00000588323 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.99□□□□□ -1.29
VPS4B-203ENST00000588323 SLC51AQ86UW1 340 aa6.99□□□□□ -1.29
VPS4B-203ENST00000588323 RASSF4Q9H2L5 321 aa6.99□□□□□ -1.29
VPS4B-203ENST00000588323 ABI2Q9NYB9 513 aaPredicted RBP6.99□□□□□ -1.29
VPS4B-203ENST00000588323 FAM177BA6PVY3 158 aa6.98□□□□□ -1.29
VPS4B-203ENST00000588323 ZBTB39O15060 712 aa6.98□□□□□ -1.29
VPS4B-203ENST00000588323 FAM117BQ6P1L5 589 aa6.98□□□□□ -1.29
VPS4B-203ENST00000588323 TXNDC11Q6PKC3 985 aa6.98□□□□□ -1.29
VPS4B-203ENST00000588323 NCAPG2Q86XI2 1143 aa6.98□□□□□ -1.29
VPS4B-203ENST00000588323 GALNT11Q8NCW6 608 aa6.98□□□□□ -1.29
VPS4B-203ENST00000588323 PBXIP1Q96AQ6 731 aa6.98□□□□□ -1.29
VPS4B-203ENST00000588323 CCDC97Q96F63 343 aaPredicted RBP6.98□□□□□ -1.29
VPS4B-203ENST00000588323 ATP2B4P23634 1241 aa6.97□□□□□ -1.29
VPS4B-203ENST00000588323 CDC25BP30305 580 aa6.97□□□□□ -1.29
VPS4B-203ENST00000588323 CD68P34810 354 aaPredicted RBP6.97□□□□□ -1.29
VPS4B-203ENST00000588323 PDE12Q6L8Q7 609 aaKnown RBP6.97□□□□□ -1.29
VPS4B-203ENST00000588323 ACAD11Q709F0 780 aa6.97□□□□□ -1.29
VPS4B-203ENST00000588323 PBX4Q9BYU1 374 aa6.97□□□□□ -1.29
VPS4B-203ENST00000588323 CEP41Q9BYV8 373 aa6.97□□□□□ -1.29
VPS4B-203ENST00000588323 RAXQ9Y2V3 346 aa6.97□□□□□ -1.29
VPS4B-203ENST00000588323 KIF4AO95239 1232 aa6.96□□□□□ -1.3
VPS4B-203ENST00000588323 CYP2E1P05181 493 aaPredicted RBP6.96□□□□□ -1.3
VPS4B-203ENST00000588323 PTPRAP18433 802 aa6.96□□□□□ -1.3
VPS4B-203ENST00000588323 ZNF438Q7Z4V0 828 aa6.96□□□□□ -1.3
VPS4B-203ENST00000588323 NUDT16Q96DE0 195 aaKnown RBP6.96□□□□□ -1.3
VPS4B-203ENST00000588323 ELP3Q9H9T3 547 aa6.96□□□□□ -1.3
VPS4B-203ENST00000588323 PCMTD2Q9NV79 361 aa6.96□□□□□ -1.3
VPS4B-203ENST00000588323 SEPT3Q9UH03 358 aa6.96□□□□□ -1.3
VPS4B-203ENST00000588323 FSCN2O14926 492 aa6.95□□□□□ -1.3
VPS4B-203ENST00000588323 GSC2O15499 205 aa6.95□□□□□ -1.3
VPS4B-203ENST00000588323 WISP1O95388 367 aa6.95□□□□□ -1.3
VPS4B-203ENST00000588323 RPLP1P05386 114 aaKnown RBP6.95□□□□□ -1.3
VPS4B-203ENST00000588323 CEP120Q8N960 986 aa6.95□□□□□ -1.3
VPS4B-203ENST00000588323 KLHL23Q8NBE8 558 aa6.95□□□□□ -1.3
VPS4B-203ENST00000588323 UBL7Q96S82 380 aaPredicted RBP6.95□□□□□ -1.3
VPS4B-203ENST00000588323 CARD10Q9BWT7 1032 aa6.95□□□□□ -1.3
VPS4B-203ENST00000588323 SH2B1Q9NRF2 756 aaPredicted RBP6.95□□□□□ -1.3
VPS4B-203ENST00000588323 TMEM63CQ9P1W3 806 aa6.95□□□□□ -1.3
VPS4B-203ENST00000588323 DHX15O43143 795 aaKnown RBP6.94□□□□□ -1.3
VPS4B-203ENST00000588323 EPHA1P21709 976 aa6.94□□□□□ -1.3
VPS4B-203ENST00000588323 DUOXA2Q1HG44 320 aa6.94□□□□□ -1.3
VPS4B-203ENST00000588323 KRTAP9-2Q9BYQ4 174 aa6.94□□□□□ -1.3
VPS4B-203ENST00000588323 ZMYND15Q9H091 742 aa6.94□□□□□ -1.3
VPS4B-203ENST00000588323 KCNK4Q9NYG8 393 aa6.94□□□□□ -1.3
VPS4B-203ENST00000588323 SLAIN2Q9P270 581 aa6.94□□□□□ -1.3
VPS4B-203ENST00000588323 STOML1Q9UBI4 398 aa6.94□□□□□ -1.3
VPS4B-203ENST00000588323 SERPINA10Q9UK55 444 aa6.94□□□□□ -1.3
VPS4B-203ENST00000588323 IGLV1-40P01703 118 aa6.93□□□□□ -1.3
VPS4B-203ENST00000588323 PCSK2P16519 638 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms