RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 HDAC5Q9UQL6 1122 aa13.71□□□□□ -0.21
CLIP3-203ENST00000586457 RAD17O75943 681 aa13.7□□□□□ -0.22
CLIP3-203ENST00000586457 EPHX2P34913 555 aa13.7□□□□□ -0.22
CLIP3-203ENST00000586457 CCT4P50991 539 aaKnown RBP13.7□□□□□ -0.22
CLIP3-203ENST00000586457 LMBR1LQ6UX01 489 aa13.7□□□□□ -0.22
CLIP3-203ENST00000586457 L3MBTL3Q96JM7 780 aaPredicted RBP13.7□□□□□ -0.22
CLIP3-203ENST00000586457 PODXL2Q9NZ53 605 aa13.7□□□□□ -0.22
CLIP3-203ENST00000586457 POLLQ9UGP5 575 aa13.7□□□□□ -0.22
CLIP3-203ENST00000586457 CSF1RP07333 972 aa13.69□□□□□ -0.22
CLIP3-203ENST00000586457 APLP1P51693 650 aa13.69□□□□□ -0.22
CLIP3-203ENST00000586457 CXCL9Q07325 125 aa13.69□□□□□ -0.22
CLIP3-203ENST00000586457 DOK7Q18PE1 504 aa13.69□□□□□ -0.22
CLIP3-203ENST00000586457 FAM161AQ3B820 660 aa13.69□□□□□ -0.22
CLIP3-203ENST00000586457 SLC51AQ86UW1 340 aa13.69□□□□□ -0.22
CLIP3-203ENST00000586457 FRAT1Q92837 279 aaPredicted RBP13.69□□□□□ -0.22
CLIP3-203ENST00000586457 TAF1DQ9H5J8 278 aaPredicted RBP13.69□□□□□ -0.22
CLIP3-203ENST00000586457 DBNDD1Q9H9R9 158 aa13.69□□□□□ -0.22
CLIP3-203ENST00000586457 CNNM1Q9NRU3 951 aa13.69□□□□□ -0.22
CLIP3-203ENST00000586457 TAF1P21675 1872 aa13.69□□□□□ -0.22
CLIP3-203ENST00000586457 RTL9Q8NET4 1388 aa13.69□□□□□ -0.22
CLIP3-203ENST00000586457 KIF16BQ96L93 1317 aa13.68□□□□□ -0.22
CLIP3-203ENST00000586457 CASP7P55210 303 aa13.68□□□□□ -0.22
CLIP3-203ENST00000586457 CHADLQ6NUI6 762 aa13.68□□□□□ -0.22
CLIP3-203ENST00000586457 LDHAL6AQ6ZMR3 332 aa13.68□□□□□ -0.22
CLIP3-203ENST00000586457 MINPP1Q9UNW1 487 aa13.68□□□□□ -0.22
CLIP3-203ENST00000586457 LEMD3Q9Y2U8 911 aa13.68□□□□□ -0.22
CLIP3-203ENST00000586457 POTECB2RU33 542 aa13.67□□□□□ -0.22
CLIP3-203ENST00000586457 H7C1D1 291 aa13.67□□□□□ -0.22
CLIP3-203ENST00000586457 ECE2O60344 883 aa13.67□□□□□ -0.22
CLIP3-203ENST00000586457 RARSP54136 660 aaKnown RBP13.67□□□□□ -0.22
CLIP3-203ENST00000586457 FOXO4P98177 505 aa13.67□□□□□ -0.22
CLIP3-203ENST00000586457 LDHDQ86WU2 507 aa13.67□□□□□ -0.22
CLIP3-203ENST00000586457 WDR90Q96KV7 1748 aa13.67□□□□□ -0.22
CLIP3-203ENST00000586457 SNED1Q8TER0 1413 aa13.66□□□□□ -0.22
CLIP3-203ENST00000586457 PLIN1O60240 522 aa13.66□□□□□ -0.22
CLIP3-203ENST00000586457 NBPF7P0C2Y1 421 aaPredicted RBP13.66□□□□□ -0.22
CLIP3-203ENST00000586457 FBXW7Q969H0 707 aa13.66□□□□□ -0.22
CLIP3-203ENST00000586457 GPR101Q96P66 508 aaPredicted RBP13.66□□□□□ -0.22
CLIP3-203ENST00000586457 MYH3P11055 1940 aa13.65□□□□□ -0.22
CLIP3-203ENST00000586457 UBTFL1P0CB47 393 aaPredicted RBP13.65□□□□□ -0.22
CLIP3-203ENST00000586457 GMPSP49915 693 aaPredicted RBP13.65□□□□□ -0.22
CLIP3-203ENST00000586457 USP50Q70EL3 339 aaPredicted RBP13.65□□□□□ -0.22
CLIP3-203ENST00000586457 ARHGAP45Q92619 1136 aa13.65□□□□□ -0.22
CLIP3-203ENST00000586457 ADARB2Q9NS39 739 aaKnown RBP13.65□□□□□ -0.22
CLIP3-203ENST00000586457 ZNF804BA4D1E1 1349 aa13.64□□□□□ -0.23
CLIP3-203ENST00000586457 ZBED9Q6R2W3 1325 aa13.64□□□□□ -0.23
CLIP3-203ENST00000586457 EPS15P42566 896 aa13.64□□□□□ -0.23
CLIP3-203ENST00000586457 BRPF1P55201 1214 aaPredicted RBP13.64□□□□□ -0.23
CLIP3-203ENST00000586457 CHRNDQ07001 517 aa13.64□□□□□ -0.23
CLIP3-203ENST00000586457 PODNQ7Z5L7 613 aa13.64□□□□□ -0.23
CLIP3-203ENST00000586457 SUCLG2Q96I99 432 aa13.64□□□□□ -0.23
CLIP3-203ENST00000586457 BICC1Q9H694 974 aaKnown RBP13.64□□□□□ -0.23
CLIP3-203ENST00000586457 GPRC5DQ9NZD1 345 aa13.64□□□□□ -0.23
CLIP3-203ENST00000586457 CNOT7Q9UIV1 285 aaKnown RBP13.64□□□□□ -0.23
CLIP3-203ENST00000586457 SCN4AP35499 1836 aa13.64□□□□□ -0.23
CLIP3-203ENST00000586457 PSMD14O00487 310 aa13.63□□□□□ -0.23
CLIP3-203ENST00000586457 RPS12P25398 132 aaKnown RBP13.63□□□□□ -0.23
CLIP3-203ENST00000586457 EPHA10Q5JZY3 1008 aa13.63□□□□□ -0.23
CLIP3-203ENST00000586457 HELBQ8NG08 1087 aaPredicted RBP13.63□□□□□ -0.23
CLIP3-203ENST00000586457 ZNF594Q96JF6 807 aaPredicted RBP13.63□□□□□ -0.23
CLIP3-203ENST00000586457 USP44Q9H0E7 712 aa13.63□□□□□ -0.23
CLIP3-203ENST00000586457 UTYO14607 1347 aa13.63□□□□□ -0.23
CLIP3-203ENST00000586457 YDJCA8MPS7 323 aa13.62□□□□□ -0.23
CLIP3-203ENST00000586457 TAF5LO75529 589 aa13.62□□□□□ -0.23
CLIP3-203ENST00000586457 BCAR3O75815 825 aa13.62□□□□□ -0.23
CLIP3-203ENST00000586457 SCNN1DP51172 638 aa13.62□□□□□ -0.23
CLIP3-203ENST00000586457 ZKSCAN2Q63HK3 967 aa13.62□□□□□ -0.23
CLIP3-203ENST00000586457 FTSJ3Q8IY81 847 aaKnown RBP13.62□□□□□ -0.23
CLIP3-203ENST00000586457 CNTROBQ8N137 903 aa13.62□□□□□ -0.23
CLIP3-203ENST00000586457 COA1Q9GZY4 146 aa13.62□□□□□ -0.23
CLIP3-203ENST00000586457 ZBTB12Q9Y330 459 aaPredicted RBP13.62□□□□□ -0.23
CLIP3-203ENST00000586457 LRRC37AA6NMS7 1700 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 USP17L3A6NCW0 530 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 USP17L4A6NCW7 530 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 GNAI3P08754 354 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 POTEIP0CG38 1075 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 POTEJP0CG39 1038 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 RBM26Q5T8P6 1007 aaKnown RBP13.61□□□□□ -0.23
CLIP3-203ENST00000586457 MAP1SQ66K74 1059 aaPredicted RBP13.61□□□□□ -0.23
CLIP3-203ENST00000586457 ATF7IPQ6VMQ6 1270 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 USP17L1Q7RTZ2 530 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 ZNF804AQ7Z570 1209 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 MICALL2Q8IY33 904 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 OGFOD1Q8N543 542 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 DPF2Q92785 391 aa13.61□□□□□ -0.23
CLIP3-203ENST00000586457 MED23Q9ULK4 1368 aa13.6□□□□□ -0.23
CLIP3-203ENST00000586457 COL4A5P29400 1685 aa13.6□□□□□ -0.23
CLIP3-203ENST00000586457 METTL24Q5JXM2 366 aa13.6□□□□□ -0.23
CLIP3-203ENST00000586457 VPS37DQ86XT2 251 aa13.6□□□□□ -0.23
CLIP3-203ENST00000586457 CLUAP1Q96AJ1 413 aa13.6□□□□□ -0.23
CLIP3-203ENST00000586457 KCNQ5Q9NR82 932 aa13.6□□□□□ -0.23
CLIP3-203ENST00000586457 MROH5Q6ZUA9 1318 aa13.6□□□□□ -0.23
CLIP3-203ENST00000586457 FRAT2O75474 233 aaPredicted RBP13.59□□□□□ -0.23
CLIP3-203ENST00000586457 VIL1P09327 827 aaKnown RBP13.59□□□□□ -0.23
CLIP3-203ENST00000586457 INTS3Q68E01 1043 aaKnown RBP13.59□□□□□ -0.23
CLIP3-203ENST00000586457 TTLL5Q6EMB2 1281 aa13.59□□□□□ -0.23
CLIP3-203ENST00000586457 RSBN1LQ6PCB5 846 aaPredicted RBP13.59□□□□□ -0.23
CLIP3-203ENST00000586457 AGBL3Q8NEM8 1001 aa13.59□□□□□ -0.23
CLIP3-203ENST00000586457 SPEF2Q9C093 1822 aa13.59□□□□□ -0.23
CLIP3-203ENST00000586457 DUOX1Q9NRD9 1551 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms