RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 IL1RAPL2Q9NP60 686 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 TSHZ2Q9NRE2 1034 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 CNNM1Q9NRU3 951 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 TFCP2L1Q9NZI6 479 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 AKAP2Q9Y2D5 859 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 NOP58Q9Y2X3 529 aaKnown RBP7.57□□□□□ -1.2
LIG3-206ENST00000586058 ZNF609O15014 1411 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 ANKRD31Q8N7Z5 1873 aa7.57□□□□□ -1.2
LIG3-206ENST00000586058 DLEC1Q9Y238 1755 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 UBN2Q6ZU65 1347 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 RIC1Q4ADV7 1423 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 GLRX3O76003 335 aaKnown RBP7.56□□□□□ -1.2
LIG3-206ENST00000586058 CIAO1O76071 339 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 IGHMBP2P38935 993 aaKnown RBP7.56□□□□□ -1.2
LIG3-206ENST00000586058 CASP7P55210 303 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 KCNQ4P56696 695 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 FOXO4P98177 505 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 GORABQ5T7V8 394 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 IER5LQ5T953 404 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 TPTE2Q6XPS3 522 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 BICDL1Q6ZP65 573 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 SKAP1Q86WV1 359 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 PLEKHM2Q8IWE5 1019 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 JARID2Q92833 1246 aaPredicted RBP7.56□□□□□ -1.2
LIG3-206ENST00000586058 DDRGK1Q96HY6 314 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 MPHOSPH8Q99549 860 aa7.56□□□□□ -1.2
LIG3-206ENST00000586058 LRRC37AA6NMS7 1700 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.55□□□□□ -1.2
LIG3-206ENST00000586058 NTSR2O95665 410 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 ITGA6P23229 1130 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 PDE1AP54750 535 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 PTF1AQ7RTS3 328 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 CNBD1Q8NA66 436 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 ARHGEF1Q92888 912 aaKnown RBP7.55□□□□□ -1.2
LIG3-206ENST00000586058 RILPL2Q969X0 211 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 KAZALD1Q96I82 304 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 NLRP3Q96P20 1036 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 OSBPL3Q9H4L5 887 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 ECHDC1Q9NTX5 307 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 STK32BQ9NY57 414 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 CEP126Q9P2H0 1117 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 PA2G4Q9UQ80 394 aaKnown RBP7.55□□□□□ -1.2
LIG3-206ENST00000586058 RTL9Q8NET4 1388 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 ABCC12Q96J65 1359 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 KIAA1551Q9HCM1 1747 aa7.55□□□□□ -1.2
LIG3-206ENST00000586058 DUOX1Q9NRD9 1551 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 MROH5Q6ZUA9 1318 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 MYO5AQ9Y4I1 1855 aaKnown RBP7.54□□□□□ -1.2
LIG3-206ENST00000586058 EYA2O00167 538 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 HIP1O00291 1037 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 REC8O95072 547 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 SEC24BO95487 1268 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 PTPN12Q05209 780 aaKnown RBP7.54□□□□□ -1.2
LIG3-206ENST00000586058 LRRFIP1Q32MZ4 808 aaKnown RBP7.54□□□□□ -1.2
LIG3-206ENST00000586058 C8orf34Q49A92 452 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 METTL24Q5JXM2 366 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 SUSD4Q5VX71 490 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 POTEAQ6S8J7 498 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 LDHAL6AQ6ZMR3 332 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 NUTM1Q86Y26 1132 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 RUFY2Q8WXA3 655 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 GPR108Q9NPR9 543 aa7.54□□□□□ -1.2
LIG3-206ENST00000586058 RBM19Q9Y4C8 960 aaKnown RBP7.54□□□□□ -1.2
LIG3-206ENST00000586058 COL11A2P13942 1736 aaPredicted RBP7.54□□□□□ -1.2
LIG3-206ENST00000586058 AKAP11Q9UKA4 1901 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 CSF1RP07333 972 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 MCCP23508 829 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 MFAP1P55081 439 aaKnown RBP7.53□□□□□ -1.2
LIG3-206ENST00000586058 TNNI3KQ59H18 835 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 EPHA10Q5JZY3 1008 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 CCDC158Q5M9N0 1113 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 TBC1D9BQ66K14 1250 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 ANKRD18AQ8IVF6 992 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 TTLL11Q8NHH1 800 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 KLHDC4Q8TBB5 520 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 RPGRQ92834 1020 aaKnown RBP7.53□□□□□ -1.2
LIG3-206ENST00000586058 NEUROD6Q96NK8 337 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 CCDC85AQ96PX6 553 aaPredicted RBP7.53□□□□□ -1.2
LIG3-206ENST00000586058 TMEM106CQ9BVX2 250 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 LRRC4BQ9NT99 713 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 STAP2Q9UGK3 403 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 SRP68Q9UHB9 627 aaKnown RBP7.53□□□□□ -1.2
LIG3-206ENST00000586058 FPGT-TNNI3KV9GXZ4 949 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 RFX7Q2KHR2 1363 aa7.53□□□□□ -1.2
LIG3-206ENST00000586058 LAMA4Q16363 1823 aa7.52□□□□□ -1.2
LIG3-206ENST00000586058 SLC5A1P13866 664 aa7.52□□□□□ -1.21
LIG3-206ENST00000586058 HCLS1P14317 486 aaPredicted RBP7.52□□□□□ -1.21
LIG3-206ENST00000586058 RFX5P48382 616 aaPredicted RBP7.52□□□□□ -1.21
LIG3-206ENST00000586058 TFCP2Q12800 502 aa7.52□□□□□ -1.21
LIG3-206ENST00000586058 ERFEQ4G0M1 354 aa7.52□□□□□ -1.21
LIG3-206ENST00000586058 TTC39AQ5SRH9 613 aa7.52□□□□□ -1.21
LIG3-206ENST00000586058 DDX46Q7L014 1031 aaKnown RBP7.52□□□□□ -1.21
LIG3-206ENST00000586058 CCDC125Q86Z20 511 aa7.52□□□□□ -1.21
LIG3-206ENST00000586058 NLGN1Q8N2Q7 840 aa7.52□□□□□ -1.21
LIG3-206ENST00000586058 TMX4Q9H1E5 349 aaPredicted RBP7.52□□□□□ -1.21
LIG3-206ENST00000586058 GREM2Q9H772 168 aa7.52□□□□□ -1.21
LIG3-206ENST00000586058 DIAPH3Q9NSV4 1193 aa7.52□□□□□ -1.21
LIG3-206ENST00000586058 PARP3Q9Y6F1 533 aa7.52□□□□□ -1.21
LIG3-206ENST00000586058 KIF13BQ9NQT8 1826 aa7.52□□□□□ -1.21
LIG3-206ENST00000586058 SALL3Q9BXA9 1300 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms