RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 KHSRPQ92945 711 aaKnown RBP eCLIP12.34□□□□□ -0.43
SMCHD1-212ENST00000585229 ARXQ96QS3 562 aa12.34□□□□□ -0.43
SMCHD1-212ENST00000585229 PNPLA7Q6ZV29 1317 aa12.34□□□□□ -0.43
SMCHD1-212ENST00000585229 GYS1P13807 737 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 GPTP24298 496 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 ATP8B2P98198 1209 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 SUSD4Q5VX71 490 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 TBC1D9BQ66K14 1250 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 GPR153Q6NV75 609 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 CENPQQ7L2Z9 268 aaPredicted RBP12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 UBE3BQ7Z3V4 1068 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 RWDD1Q9H446 243 aaPredicted RBP12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 STK32BQ9NY57 414 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 TFCP2L1Q9NZI6 479 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 NIP7Q9Y221 180 aaKnown RBP eCLIP12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 PCDHGA4Q9Y5G9 962 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 RIC1Q4ADV7 1423 aa12.33□□□□□ -0.44
SMCHD1-212ENST00000585229 CARMIL3Q8ND23 1372 aa12.32□□□□□ -0.44
SMCHD1-212ENST00000585229 IGHDP01880 384 aa12.32□□□□□ -0.44
SMCHD1-212ENST00000585229 PPP1R42Q7Z4L9 355 aa12.32□□□□□ -0.44
SMCHD1-212ENST00000585229 COL23A1Q86Y22 540 aaPredicted RBP12.32□□□□□ -0.44
SMCHD1-212ENST00000585229 SSH3Q8TE77 659 aa12.32□□□□□ -0.44
SMCHD1-212ENST00000585229 LRP5O75197 1615 aa12.31□□□□□ -0.44
SMCHD1-212ENST00000585229 TM4SF1P30408 202 aa12.31□□□□□ -0.44
SMCHD1-212ENST00000585229 FOXO4P98177 505 aa12.31□□□□□ -0.44
SMCHD1-212ENST00000585229 ARSIQ5FYB1 569 aa12.31□□□□□ -0.44
SMCHD1-212ENST00000585229 EPHA10Q5JZY3 1008 aa12.31□□□□□ -0.44
SMCHD1-212ENST00000585229 SMC5Q8IY18 1101 aa12.31□□□□□ -0.44
SMCHD1-212ENST00000585229 FAM163AQ96GL9 167 aaPredicted RBP12.31□□□□□ -0.44
SMCHD1-212ENST00000585229 UTP14AQ9BVJ6 771 aaKnown RBP12.31□□□□□ -0.44
SMCHD1-212ENST00000585229 BICC1Q9H694 974 aaKnown RBP12.31□□□□□ -0.44
SMCHD1-212ENST00000585229 SH3TC1Q8TE82 1336 aa12.31□□□□□ -0.44
SMCHD1-212ENST00000585229 PNMA6EA0A0J9YXQ4 647 aa12.3□□□□□ -0.44
SMCHD1-212ENST00000585229 HMMRO75330 724 aa12.3□□□□□ -0.44
SMCHD1-212ENST00000585229 NFIXQ14938 502 aa12.3□□□□□ -0.44
SMCHD1-212ENST00000585229 NYXQ9GZU5 481 aa12.3□□□□□ -0.44
SMCHD1-212ENST00000585229 DCTPP1Q9H773 170 aa12.3□□□□□ -0.44
SMCHD1-212ENST00000585229 TRMT112Q9UI30 125 aaKnown RBP12.3□□□□□ -0.44
SMCHD1-212ENST00000585229 TNRC6CQ9HCJ0 1690 aaKnown RBP12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 CSF1RP07333 972 aa12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 HSP90B1P14625 803 aaKnown RBP12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 SLC10A5Q5PT55 438 aa12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 ZNF710Q8N1W2 664 aa12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 JARID2Q92833 1246 aaPredicted RBP12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 GCC1Q96CN9 775 aa12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 FAM89AQ96GI7 184 aa12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 SETDB2Q96T68 719 aa12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 ZSWIM6Q9HCJ5 1215 aa12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 RTL9Q8NET4 1388 aa12.29□□□□□ -0.44
SMCHD1-212ENST00000585229 ANKRD31Q8N7Z5 1873 aa12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 DPYSL4O14531 572 aa12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 IRS4O14654 1257 aaPredicted RBP12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 PDE8AO60658 829 aa12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 HOXB1P14653 301 aaPredicted RBP12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 RFX5P48382 616 aaPredicted RBP12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 SYNE4Q8N205 404 aa12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 NLGN1Q8N2Q7 840 aa12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 NOP58Q9Y2X3 529 aaKnown RBP12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 ARIH1Q9Y4X5 557 aaPredicted RBP12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 ABCC12Q96J65 1359 aa12.28□□□□□ -0.44
SMCHD1-212ENST00000585229 POLRMTO00411 1230 aaKnown RBP12.27□□□□□ -0.45
SMCHD1-212ENST00000585229 RIMBP2O15034 1052 aa12.27□□□□□ -0.45
SMCHD1-212ENST00000585229 SRGAP3O43295 1099 aa12.27□□□□□ -0.45
SMCHD1-212ENST00000585229 CTSWP56202 376 aa12.27□□□□□ -0.45
SMCHD1-212ENST00000585229 DDR1Q08345 913 aa12.27□□□□□ -0.45
SMCHD1-212ENST00000585229 NBR1Q14596 966 aa12.26□□□□□ -0.45
SMCHD1-212ENST00000585229 LMBR1LQ6UX01 489 aa12.26□□□□□ -0.45
SMCHD1-212ENST00000585229 ILDR2Q71H61 639 aa12.26□□□□□ -0.45
SMCHD1-212ENST00000585229 NBPF5PQ86XG9 351 aaPredicted RBP12.26□□□□□ -0.45
SMCHD1-212ENST00000585229 TTLL11Q8NHH1 800 aa12.26□□□□□ -0.45
SMCHD1-212ENST00000585229 SLC16A10Q8TF71 515 aa12.26□□□□□ -0.45
SMCHD1-212ENST00000585229 COPRSQ9NQ92 184 aa12.26□□□□□ -0.45
SMCHD1-212ENST00000585229 A0A1B0GUL6 1792 aa12.25□□□□□ -0.45
SMCHD1-212ENST00000585229 NUDT7P0C024 238 aa12.25□□□□□ -0.45
SMCHD1-212ENST00000585229 PTPN12Q05209 780 aaKnown RBP12.25□□□□□ -0.45
SMCHD1-212ENST00000585229 SF3B3Q15393 1217 aaKnown RBP12.25□□□□□ -0.45
SMCHD1-212ENST00000585229 ERFEQ4G0M1 354 aa12.25□□□□□ -0.45
SMCHD1-212ENST00000585229 RTL5Q5HYW3 569 aaPredicted RBP12.25□□□□□ -0.45
SMCHD1-212ENST00000585229 TPTE2Q6XPS3 522 aa12.25□□□□□ -0.45
SMCHD1-212ENST00000585229 BICDL1Q6ZP65 573 aa12.25□□□□□ -0.45
SMCHD1-212ENST00000585229 NUTM1Q86Y26 1132 aa12.25□□□□□ -0.45
SMCHD1-212ENST00000585229 KIF13BQ9NQT8 1826 aa12.25□□□□□ -0.45
SMCHD1-212ENST00000585229 FAM177BA6PVY3 158 aa12.24□□□□□ -0.45
SMCHD1-212ENST00000585229 SERPINB2P05120 415 aa12.24□□□□□ -0.45
SMCHD1-212ENST00000585229 HCLS1P14317 486 aaPredicted RBP12.24□□□□□ -0.45
SMCHD1-212ENST00000585229 NUCB1Q02818 461 aa12.24□□□□□ -0.45
SMCHD1-212ENST00000585229 PRR5LQ6MZQ0 368 aa12.24□□□□□ -0.45
SMCHD1-212ENST00000585229 SPEF2Q9C093 1822 aa12.23□□□□□ -0.45
SMCHD1-212ENST00000585229 KLRG2A4D1S0 409 aaPredicted RBP12.23□□□□□ -0.45
SMCHD1-212ENST00000585229 RAB11FIP3O75154 756 aa12.23□□□□□ -0.45
SMCHD1-212ENST00000585229 FAM161AQ3B820 660 aa12.23□□□□□ -0.45
SMCHD1-212ENST00000585229 HSP90AB4PQ58FF6 505 aa12.23□□□□□ -0.45
SMCHD1-212ENST00000585229 CNBD1Q8NA66 436 aa12.23□□□□□ -0.45
SMCHD1-212ENST00000585229 PDZRN3Q9UPQ7 1066 aa12.23□□□□□ -0.45
SMCHD1-212ENST00000585229 COL11A2P13942 1736 aaPredicted RBP12.23□□□□□ -0.45
SMCHD1-212ENST00000585229 COL4A1P02462 1669 aa12.22□□□□□ -0.45
SMCHD1-212ENST00000585229 SURF6O75683 361 aaKnown RBP12.22□□□□□ -0.45
SMCHD1-212ENST00000585229 CIAO1O76071 339 aa12.22□□□□□ -0.45
SMCHD1-212ENST00000585229 MAP3K9P80192 1104 aa12.22□□□□□ -0.45
SMCHD1-212ENST00000585229 CCDC152Q4G0S7 254 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms