RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 GPR152Q8TDT2 470 aa8.64□□□□□ -1.03
SMCHD1-208ENST00000583344 PIK3R5Q8WYR1 880 aa8.64□□□□□ -1.03
SMCHD1-208ENST00000583344 SSBP4Q9BWG4 385 aaPredicted RBP8.64□□□□□ -1.03
SMCHD1-208ENST00000583344 SEPT3Q9UH03 358 aa8.64□□□□□ -1.03
SMCHD1-208ENST00000583344 TRIM33Q9UPN9 1127 aa8.64□□□□□ -1.03
SMCHD1-208ENST00000583344 ATP2B4P23634 1241 aa8.63□□□□□ -1.03
SMCHD1-208ENST00000583344 NOS3P29474 1203 aa8.63□□□□□ -1.03
SMCHD1-208ENST00000583344 IREB2P48200 963 aaKnown RBP8.63□□□□□ -1.03
SMCHD1-208ENST00000583344 COL13A1Q5TAT6 717 aaPredicted RBP8.63□□□□□ -1.03
SMCHD1-208ENST00000583344 WFDC12Q8WWY7 111 aa8.63□□□□□ -1.03
SMCHD1-208ENST00000583344 STIM2Q9P246 746 aa8.63□□□□□ -1.03
SMCHD1-208ENST00000583344 H2AFB1P0C5Y9 115 aa8.62□□□□□ -1.03
SMCHD1-208ENST00000583344 H2AFB2P0C5Z0 115 aa8.62□□□□□ -1.03
SMCHD1-208ENST00000583344 IL22RA1Q8N6P7 574 aa8.62□□□□□ -1.03
SMCHD1-208ENST00000583344 OR13H1Q8NG92 308 aa8.62□□□□□ -1.03
SMCHD1-208ENST00000583344 RBSNQ9H1K0 784 aa8.62□□□□□ -1.03
SMCHD1-208ENST00000583344 SERPINA10Q9UK55 444 aa8.62□□□□□ -1.03
SMCHD1-208ENST00000583344 SCO2A0A1W2PP80 73 aa8.61□□□□□ -1.03
SMCHD1-208ENST00000583344 DLL1O00548 723 aa8.61□□□□□ -1.03
SMCHD1-208ENST00000583344 IGF2-ASQ6U949 168 aa8.61□□□□□ -1.03
SMCHD1-208ENST00000583344 MEGF10Q96KG7 1140 aa8.61□□□□□ -1.03
SMCHD1-208ENST00000583344 FAM13BQ9NYF5 915 aa8.61□□□□□ -1.03
SMCHD1-208ENST00000583344 SCNN1AP37088 669 aa8.6□□□□□ -1.03
SMCHD1-208ENST00000583344 ATP11AP98196 1134 aa8.6□□□□□ -1.03
SMCHD1-208ENST00000583344 ATCAYQ86WG3 371 aa8.59□□□□□ -1.03
SMCHD1-208ENST00000583344 ABTB2Q8N961 1025 aa8.59□□□□□ -1.03
SMCHD1-208ENST00000583344 ALX3O95076 343 aa8.58□□□□□ -1.04
SMCHD1-208ENST00000583344 CYP2E1P05181 493 aaPredicted RBP8.58□□□□□ -1.04
SMCHD1-208ENST00000583344 HYAL2Q12891 473 aa8.58□□□□□ -1.04
SMCHD1-208ENST00000583344 SETDB1Q15047 1291 aa8.58□□□□□ -1.04
SMCHD1-208ENST00000583344 TTC39BQ5VTQ0 682 aaPredicted RBP8.58□□□□□ -1.04
SMCHD1-208ENST00000583344 FNDC3AQ9Y2H6 1198 aaKnown RBP8.58□□□□□ -1.04
SMCHD1-208ENST00000583344 ADAMTSL4Q6UY14 1074 aa8.57□□□□□ -1.04
SMCHD1-208ENST00000583344 NUDT16Q96DE0 195 aaKnown RBP8.57□□□□□ -1.04
SMCHD1-208ENST00000583344 LACRTQ9GZZ8 138 aa8.57□□□□□ -1.04
SMCHD1-208ENST00000583344 CEP135Q66GS9 1140 aa8.56□□□□□ -1.04
SMCHD1-208ENST00000583344 TXNDC11Q6PKC3 985 aa8.56□□□□□ -1.04
SMCHD1-208ENST00000583344 RASSF4Q9H2L5 321 aa8.56□□□□□ -1.04
SMCHD1-208ENST00000583344 AKTIPQ9H8T0 292 aa8.56□□□□□ -1.04
SMCHD1-208ENST00000583344 ABI2Q9NYB9 513 aaPredicted RBP8.56□□□□□ -1.04
SMCHD1-208ENST00000583344 TMEM63CQ9P1W3 806 aa8.56□□□□□ -1.04
SMCHD1-208ENST00000583344 F8W735 103 aaPredicted RBP8.55□□□□□ -1.04
SMCHD1-208ENST00000583344 AGGF1Q8N302 714 aaeCLIP8.55□□□□□ -1.04
SMCHD1-208ENST00000583344 CCDC82Q8N4S0 544 aa8.55□□□□□ -1.04
SMCHD1-208ENST00000583344 SPACA7Q96KW9 195 aa8.55□□□□□ -1.04
SMCHD1-208ENST00000583344 MRPL18Q9H0U6 180 aaKnown RBP8.55□□□□□ -1.04
SMCHD1-208ENST00000583344 PPME1Q9Y570 386 aa8.55□□□□□ -1.04
SMCHD1-208ENST00000583344 LINC01387J3KSC0 135 aa8.54□□□□□ -1.04
SMCHD1-208ENST00000583344 CDC25BP30305 580 aa8.54□□□□□ -1.04
SMCHD1-208ENST00000583344 GALNT11Q8NCW6 608 aa8.54□□□□□ -1.04
SMCHD1-208ENST00000583344 EDEM1Q92611 657 aa8.54□□□□□ -1.04
SMCHD1-208ENST00000583344 ELP3Q9H9T3 547 aa8.54□□□□□ -1.04
SMCHD1-208ENST00000583344 SRA1Q9HD15 236 aaKnown RBP8.54□□□□□ -1.04
SMCHD1-208ENST00000583344 KANSL3Q9P2N6 904 aa8.54□□□□□ -1.04
SMCHD1-208ENST00000583344 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.54□□□□□ -1.04
SMCHD1-208ENST00000583344 SMNDC1O75940 238 aaKnown RBP eCLIP8.53□□□□□ -1.04
SMCHD1-208ENST00000583344 KIF4AO95239 1232 aa8.53□□□□□ -1.04
SMCHD1-208ENST00000583344 ARTNQ5T4W7 220 aa8.53□□□□□ -1.04
SMCHD1-208ENST00000583344 ZNF438Q7Z4V0 828 aa8.53□□□□□ -1.04
SMCHD1-208ENST00000583344 NCAPG2Q86XI2 1143 aa8.53□□□□□ -1.04
SMCHD1-208ENST00000583344 MAP4K3Q8IVH8 894 aa8.53□□□□□ -1.04
SMCHD1-208ENST00000583344 HELQQ8TDG4 1101 aa8.53□□□□□ -1.04
SMCHD1-208ENST00000583344 CNTN3Q9P232 1028 aa8.53□□□□□ -1.04
SMCHD1-208ENST00000583344 GTF3C3Q9Y5Q9 886 aa8.53□□□□□ -1.04
SMCHD1-208ENST00000583344 A6NHS1 94 aa8.52□□□□□ -1.05
SMCHD1-208ENST00000583344 DNM1Q05193 864 aaKnown RBP8.52□□□□□ -1.05
SMCHD1-208ENST00000583344 PDE12Q6L8Q7 609 aaKnown RBP8.52□□□□□ -1.05
SMCHD1-208ENST00000583344 DZIP1LQ8IYY4 767 aaKnown RBP8.52□□□□□ -1.05
SMCHD1-208ENST00000583344 CARD10Q9BWT7 1032 aa8.52□□□□□ -1.05
SMCHD1-208ENST00000583344 ZFP64Q9NPA5 681 aa8.52□□□□□ -1.05
SMCHD1-208ENST00000583344 TMEM88BA6NKF7 163 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 WISP1O95388 367 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 ACPPP15309 386 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 MPSTP25325 297 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 CDC27P30260 824 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 MTMR3Q13615 1198 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 PRR23CQ6ZRP0 262 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 CACTIN-AS1Q8N1I8 211 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 TMEM130Q8N3G9 435 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 CEP120Q8N960 986 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 PBX4Q9BYU1 374 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 MUC3BQ9H195 1237 aa8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 SH2B1Q9NRF2 756 aaPredicted RBP8.51□□□□□ -1.05
SMCHD1-208ENST00000583344 EPHA1P21709 976 aa8.5□□□□□ -1.05
SMCHD1-208ENST00000583344 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.5□□□□□ -1.05
SMCHD1-208ENST00000583344 GTF3C2Q8WUA4 911 aaPredicted RBP8.5□□□□□ -1.05
SMCHD1-208ENST00000583344 GGNBP2Q9H3C7 697 aa8.5□□□□□ -1.05
SMCHD1-208ENST00000583344 C1orf115Q9H7X2 142 aa8.5□□□□□ -1.05
SMCHD1-208ENST00000583344 KCNK4Q9NYG8 393 aa8.5□□□□□ -1.05
SMCHD1-208ENST00000583344 TM4SF5O14894 197 aa8.49□□□□□ -1.05
SMCHD1-208ENST00000583344 PDGFAP04085 211 aa8.49□□□□□ -1.05
SMCHD1-208ENST00000583344 GLB1P16278 677 aa8.49□□□□□ -1.05
SMCHD1-208ENST00000583344 EIF1AXP47813 144 aaKnown RBP8.49□□□□□ -1.05
SMCHD1-208ENST00000583344 NOM1Q5C9Z4 860 aaKnown RBP8.49□□□□□ -1.05
SMCHD1-208ENST00000583344 Q6ZS46 218 aa8.49□□□□□ -1.05
SMCHD1-208ENST00000583344 C1orf127Q8N9H9 656 aa8.49□□□□□ -1.05
SMCHD1-208ENST00000583344 DCAF11Q8TEB1 546 aa8.49□□□□□ -1.05
SMCHD1-208ENST00000583344 CARNS1A5YM72 827 aa8.48□□□□□ -1.05
SMCHD1-208ENST00000583344 SSFA2P28290 1259 aa8.48□□□□□ -1.05
SMCHD1-208ENST00000583344 LRP8Q14114 963 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms