RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 DBNDD1Q9H9R9 158 aa26.28■■□□□ 1.8
SHMT1-209ENST00000582653 WBP1LQ9NX94 342 aa26.28■■□□□ 1.8
SHMT1-209ENST00000582653 ZC3H12CQ9C0D7 883 aaKnown RBP26.27■■□□□ 1.8
SHMT1-209ENST00000582653 PSMD14O00487 310 aa26.26■■□□□ 1.79
SHMT1-209ENST00000582653 ZBTB12Q9Y330 459 aaPredicted RBP26.26■■□□□ 1.79
SHMT1-209ENST00000582653 DOK7Q18PE1 504 aa26.25■■□□□ 1.79
SHMT1-209ENST00000582653 CWF19L2Q2TBE0 894 aaKnown RBP26.25■■□□□ 1.79
SHMT1-209ENST00000582653 AIDAQ96BJ3 306 aa26.25■■□□□ 1.79
SHMT1-209ENST00000582653 SPINK5Q9NQ38 1064 aaPredicted RBP26.25■■□□□ 1.79
SHMT1-209ENST00000582653 KCNQ5Q9NR82 932 aa26.25■■□□□ 1.79
SHMT1-209ENST00000582653 ECE2O60344 883 aa26.24■■□□□ 1.79
SHMT1-209ENST00000582653 CTCFP49711 727 aaPredicted RBP26.24■■□□□ 1.79
SHMT1-209ENST00000582653 EXOSC9Q06265 439 aaKnown RBP26.24■■□□□ 1.79
SHMT1-209ENST00000582653 NEXNQ0ZGT2 675 aa26.24■■□□□ 1.79
SHMT1-209ENST00000582653 CDC37L1Q7L3B6 337 aa26.24■■□□□ 1.79
SHMT1-209ENST00000582653 MICALL2Q8IY33 904 aa26.24■■□□□ 1.79
SHMT1-209ENST00000582653 PRDM10Q9NQV6 1147 aa26.24■■□□□ 1.79
SHMT1-209ENST00000582653 ANKIB1Q9P2G1 1089 aa26.24■■□□□ 1.79
SHMT1-209ENST00000582653 TLL2Q9Y6L7 1015 aa26.24■■□□□ 1.79
SHMT1-209ENST00000582653 SHTN1A0MZ66 631 aa26.23■■□□□ 1.79
SHMT1-209ENST00000582653 VAMP4O75379 141 aa26.23■■□□□ 1.79
SHMT1-209ENST00000582653 RPS12P25398 132 aaKnown RBP26.23■■□□□ 1.79
SHMT1-209ENST00000582653 ECE1P42892 770 aa26.23■■□□□ 1.79
SHMT1-209ENST00000582653 MAP2K1Q02750 393 aaPredicted RBP26.23■■□□□ 1.79
SHMT1-209ENST00000582653 TRPM4Q8TD43 1214 aa26.23■■□□□ 1.79
SHMT1-209ENST00000582653 GPR101Q96P66 508 aaPredicted RBP26.23■■□□□ 1.79
SHMT1-209ENST00000582653 GLIS2Q9BZE0 524 aaPredicted RBP26.23■■□□□ 1.79
SHMT1-209ENST00000582653 GGA1Q9UJY5 639 aa26.22■■□□□ 1.79
SHMT1-209ENST00000582653 NEURL1BA8MQ27 555 aa26.21■■□□□ 1.79
SHMT1-209ENST00000582653 FLIIQ13045 1269 aa26.21■■□□□ 1.79
SHMT1-209ENST00000582653 ANKRD18AQ8IVF6 992 aa26.21■■□□□ 1.79
SHMT1-209ENST00000582653 CAPNS2Q96L46 248 aa26.21■■□□□ 1.79
SHMT1-209ENST00000582653 UFL1O94874 794 aa26.2■■□□□ 1.78
SHMT1-209ENST00000582653 CELF2O95319 508 aaKnown RBP26.2■■□□□ 1.78
SHMT1-209ENST00000582653 VIL1P09327 827 aaKnown RBP26.2■■□□□ 1.78
SHMT1-209ENST00000582653 SAMD7Q7Z3H4 446 aa26.2■■□□□ 1.78
SHMT1-209ENST00000582653 SAPCD2Q86UD0 394 aa26.2■■□□□ 1.78
SHMT1-209ENST00000582653 TTLL11Q8NHH1 800 aa26.2■■□□□ 1.78
SHMT1-209ENST00000582653 RTL9Q8NET4 1388 aa26.2■■□□□ 1.78
SHMT1-209ENST00000582653 G3V3G9 751 aa26.19■■□□□ 1.78
SHMT1-209ENST00000582653 DCAF8Q5TAQ9 597 aa26.19■■□□□ 1.78
SHMT1-209ENST00000582653 CYP4F22Q6NT55 531 aa26.19■■□□□ 1.78
SHMT1-209ENST00000582653 H7C1W4 665 aa26.18■■□□□ 1.78
SHMT1-209ENST00000582653 CTSWP56202 376 aa26.18■■□□□ 1.78
SHMT1-209ENST00000582653 FKBP5Q13451 457 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-209ENST00000582653 HHIPL1Q96JK4 782 aa26.18■■□□□ 1.78
SHMT1-209ENST00000582653 TRPM7Q96QT4 1865 aa26.18■■□□□ 1.78
SHMT1-209ENST00000582653 CDC5LQ99459 802 aaKnown RBP26.18■■□□□ 1.78
SHMT1-209ENST00000582653 XDHP47989 1333 aa26.17■■□□□ 1.78
SHMT1-209ENST00000582653 PAXIP1Q6ZW49 1069 aaPredicted RBP26.17■■□□□ 1.78
SHMT1-209ENST00000582653 USP48Q86UV5 1035 aa26.17■■□□□ 1.78
SHMT1-209ENST00000582653 ATP2B4P23634 1241 aa26.16■■□□□ 1.78
SHMT1-209ENST00000582653 MAP2K2P36507 400 aa26.16■■□□□ 1.78
SHMT1-209ENST00000582653 TBC1D10BQ4KMP7 808 aaPredicted RBP26.16■■□□□ 1.78
SHMT1-209ENST00000582653 UBE3BQ7Z3V4 1068 aa26.16■■□□□ 1.78
SHMT1-209ENST00000582653 BSDC1Q9NW68 430 aaPredicted RBP26.16■■□□□ 1.78
SHMT1-209ENST00000582653 CAPN15O75808 1086 aa26.15■■□□□ 1.78
SHMT1-209ENST00000582653 EGFRP00533 1210 aa26.15■■□□□ 1.78
SHMT1-209ENST00000582653 LBX1P52954 281 aa26.15■■□□□ 1.78
SHMT1-209ENST00000582653 DNAAF4Q8WXU2 420 aa26.15■■□□□ 1.78
SHMT1-209ENST00000582653 GREM2Q9H772 168 aa26.15■■□□□ 1.78
SHMT1-209ENST00000582653 GCKRQ14397 625 aa26.14■■□□□ 1.78
SHMT1-209ENST00000582653 RBM26Q5T8P6 1007 aaKnown RBP26.14■■□□□ 1.78
SHMT1-209ENST00000582653 PODNQ7Z5L7 613 aa26.14■■□□□ 1.78
SHMT1-209ENST00000582653 MINPP1Q9UNW1 487 aa26.14■■□□□ 1.78
SHMT1-209ENST00000582653 GRM1Q13255 1194 aa26.13■■□□□ 1.77
SHMT1-209ENST00000582653 AGBL3Q8NEM8 1001 aa26.13■■□□□ 1.77
SHMT1-209ENST00000582653 MYH16Q9H6N6 1097 aa26.13■■□□□ 1.77
SHMT1-209ENST00000582653 ZNF408Q9H9D4 720 aa26.13■■□□□ 1.77
SHMT1-209ENST00000582653 HSPA8P11142 646 aaKnown RBP26.12■■□□□ 1.77
SHMT1-209ENST00000582653 DCPSQ96C86 337 aaKnown RBP26.12■■□□□ 1.77
SHMT1-209ENST00000582653 PLA2G12BQ9BX93 195 aa26.12■■□□□ 1.77
SHMT1-209ENST00000582653 WTIPA6NIX2 430 aaPredicted RBP26.11■■□□□ 1.77
SHMT1-209ENST00000582653 RSBN1LQ6PCB5 846 aaPredicted RBP26.11■■□□□ 1.77
SHMT1-209ENST00000582653 LINS1Q8NG48 757 aa26.11■■□□□ 1.77
SHMT1-209ENST00000582653 BEGAINQ9BUH8 593 aa26.11■■□□□ 1.77
SHMT1-209ENST00000582653 F6X3S4 739 aa26.1■■□□□ 1.77
SHMT1-209ENST00000582653 CASP7P55210 303 aa26.1■■□□□ 1.77
SHMT1-209ENST00000582653 DLK2Q6UY11 383 aa26.1■■□□□ 1.77
SHMT1-209ENST00000582653 KRT26Q7Z3Y9 468 aa26.1■■□□□ 1.77
SHMT1-209ENST00000582653 AOC2O75106 756 aa26.09■■□□□ 1.77
SHMT1-209ENST00000582653 CSF1RP07333 972 aa26.09■■□□□ 1.77
SHMT1-209ENST00000582653 ZNF280AP59817 542 aaPredicted RBP26.09■■□□□ 1.77
SHMT1-209ENST00000582653 KIF4BQ2VIQ3 1234 aa26.09■■□□□ 1.77
SHMT1-209ENST00000582653 USP17L3A6NCW0 530 aa26.08■■□□□ 1.77
SHMT1-209ENST00000582653 USP17L4A6NCW7 530 aa26.08■■□□□ 1.77
SHMT1-209ENST00000582653 CCT4P50991 539 aaKnown RBP26.08■■□□□ 1.77
SHMT1-209ENST00000582653 USP17L1Q7RTZ2 530 aa26.08■■□□□ 1.77
SHMT1-209ENST00000582653 GMLQ99445 158 aa26.08■■□□□ 1.77
SHMT1-209ENST00000582653 SCN9AQ15858 1988 aa26.07■■□□□ 1.76
SHMT1-209ENST00000582653 IGHMBP2P38935 993 aaKnown RBP26.07■■□□□ 1.76
SHMT1-209ENST00000582653 LEMD3Q9Y2U8 911 aa26.07■■□□□ 1.76
SHMT1-209ENST00000582653 ZNF521Q96K83 1311 aa26.07■■□□□ 1.76
SHMT1-209ENST00000582653 ZNF609O15014 1411 aa26.06■■□□□ 1.76
SHMT1-209ENST00000582653 ITGA6P23229 1130 aa26.06■■□□□ 1.76
SHMT1-209ENST00000582653 MYH3P11055 1940 aa26.06■■□□□ 1.76
SHMT1-209ENST00000582653 USP17L8P0C7I0 530 aa26.05■■□□□ 1.76
SHMT1-209ENST00000582653 HUNKP57058 714 aa26.05■■□□□ 1.76
SHMT1-209ENST00000582653 FAM161AQ3B820 660 aa26.05■■□□□ 1.76
SHMT1-209ENST00000582653 BEND3Q5T5X7 828 aa26.05■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms