RNA–Protein interactions for RNA: ENST00000581536.5

TOP3A-211, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-211ENST00000581536 KDM2BQ8NHM5 1336 aa12.48□□□□□ -0.41
TOP3A-211ENST00000581536 PPEF1O14829 653 aaPredicted RBP12.48□□□□□ -0.41
TOP3A-211ENST00000581536 TRIM28Q13263 835 aaKnown RBP12.48□□□□□ -0.41
TOP3A-211ENST00000581536 METTL22Q9BUU2 404 aaPredicted RBP12.48□□□□□ -0.41
TOP3A-211ENST00000581536 COL4A1P02462 1669 aa12.48□□□□□ -0.41
TOP3A-211ENST00000581536 SNED1Q8TER0 1413 aa12.47□□□□□ -0.41
TOP3A-211ENST00000581536 IRS4O14654 1257 aaPredicted RBP12.47□□□□□ -0.41
TOP3A-211ENST00000581536 TOMM70O94826 608 aa12.47□□□□□ -0.41
TOP3A-211ENST00000581536 IGKV5-2P06315 115 aa12.47□□□□□ -0.41
TOP3A-211ENST00000581536 KSR2Q6VAB6 950 aa12.47□□□□□ -0.41
TOP3A-211ENST00000581536 STK31Q9BXU1 1019 aa12.47□□□□□ -0.41
TOP3A-211ENST00000581536 IARSP41252 1262 aaKnown RBP12.46□□□□□ -0.41
TOP3A-211ENST00000581536 DDX46Q7L014 1031 aaKnown RBP12.46□□□□□ -0.41
TOP3A-211ENST00000581536 ATP6V0A2Q9Y487 856 aa12.46□□□□□ -0.41
TOP3A-211ENST00000581536 COL4A5P29400 1685 aa12.45□□□□□ -0.42
TOP3A-211ENST00000581536 RNF123Q5XPI4 1314 aa12.45□□□□□ -0.42
TOP3A-211ENST00000581536 ZNF521Q96K83 1311 aa12.45□□□□□ -0.42
TOP3A-211ENST00000581536 ZC3H4Q9UPT8 1303 aaKnown RBP12.45□□□□□ -0.42
TOP3A-211ENST00000581536 BBOX1O75936 387 aa12.45□□□□□ -0.42
TOP3A-211ENST00000581536 DDX58O95786 925 aaKnown RBP12.45□□□□□ -0.42
TOP3A-211ENST00000581536 VEGFAP15692 232 aaPredicted RBP12.45□□□□□ -0.42
TOP3A-211ENST00000581536 SF3B3Q15393 1217 aaKnown RBP12.45□□□□□ -0.42
TOP3A-211ENST00000581536 CWF19L2Q2TBE0 894 aaKnown RBP12.45□□□□□ -0.42
TOP3A-211ENST00000581536 SP8Q8IXZ3 490 aa12.45□□□□□ -0.42
TOP3A-211ENST00000581536 C16orf71Q8IYS4 520 aaPredicted RBP12.45□□□□□ -0.42
TOP3A-211ENST00000581536 ZBTB38Q8NAP3 1195 aaPredicted RBP12.45□□□□□ -0.42
TOP3A-211ENST00000581536 CCDC191Q8NCU4 936 aa12.45□□□□□ -0.42
TOP3A-211ENST00000581536 SLAIN1Q8ND83 568 aa12.45□□□□□ -0.42
TOP3A-211ENST00000581536 CELF1Q92879 486 aaKnown RBP12.45□□□□□ -0.42
TOP3A-211ENST00000581536 CCDC85AQ96PX6 553 aaPredicted RBP12.45□□□□□ -0.42
TOP3A-211ENST00000581536 PSMD1Q99460 953 aa12.45□□□□□ -0.42
TOP3A-211ENST00000581536 CWC25Q9NXE8 425 aaPredicted RBP12.45□□□□□ -0.42
TOP3A-211ENST00000581536 WDR90Q96KV7 1748 aa12.45□□□□□ -0.42
TOP3A-211ENST00000581536 ZNF541Q9H0D2 1346 aa12.44□□□□□ -0.42
TOP3A-211ENST00000581536 FLIIQ13045 1269 aa12.44□□□□□ -0.42
TOP3A-211ENST00000581536 GRAPQ13588 217 aa12.44□□□□□ -0.42
TOP3A-211ENST00000581536 CC2D2BQ6DHV5 1058 aa12.44□□□□□ -0.42
TOP3A-211ENST00000581536 GRAPLQ8TC17 118 aaPredicted RBP12.44□□□□□ -0.42
TOP3A-211ENST00000581536 CHMP4AQ9BY43 222 aa12.44□□□□□ -0.42
TOP3A-211ENST00000581536 SEC31BQ9NQW1 1179 aa12.44□□□□□ -0.42
TOP3A-211ENST00000581536 MYH3P11055 1940 aa12.43□□□□□ -0.42
TOP3A-211ENST00000581536 FZD9O00144 591 aa12.43□□□□□ -0.42
TOP3A-211ENST00000581536 PCCAP05165 728 aaPredicted RBP12.43□□□□□ -0.42
TOP3A-211ENST00000581536 HSPA6P17066 643 aa12.43□□□□□ -0.42
TOP3A-211ENST00000581536 RBM46Q8TBY0 533 aaKnown RBP12.43□□□□□ -0.42
TOP3A-211ENST00000581536 CDCA7LQ96GN5 454 aa12.43□□□□□ -0.42
TOP3A-211ENST00000581536 NEURL1BA8MQ27 555 aa12.42□□□□□ -0.42
TOP3A-211ENST00000581536 F6X3S4 739 aa12.42□□□□□ -0.42
TOP3A-211ENST00000581536 HTRA3P83110 453 aa12.42□□□□□ -0.42
TOP3A-211ENST00000581536 FKBP5Q13451 457 aaPredicted RBP12.42□□□□□ -0.42
TOP3A-211ENST00000581536 AOC3Q16853 763 aa12.42□□□□□ -0.42
TOP3A-211ENST00000581536 MPNDQ8N594 471 aa12.42□□□□□ -0.42
TOP3A-211ENST00000581536 MYH16Q9H6N6 1097 aa12.42□□□□□ -0.42
TOP3A-211ENST00000581536 SPEF2Q9C093 1822 aa12.41□□□□□ -0.42
TOP3A-211ENST00000581536 H7C1W4 665 aa12.41□□□□□ -0.42
TOP3A-211ENST00000581536 CCER2I3L3R5 266 aa12.41□□□□□ -0.42
TOP3A-211ENST00000581536 PDE8AO60658 829 aa12.41□□□□□ -0.42
TOP3A-211ENST00000581536 RPS8P62241 208 aaKnown RBP12.41□□□□□ -0.42
TOP3A-211ENST00000581536 TMEM92Q6UXU6 159 aa12.41□□□□□ -0.42
TOP3A-211ENST00000581536 DPP8Q6V1X1 898 aaPredicted RBP12.41□□□□□ -0.42
TOP3A-211ENST00000581536 LARGE2Q8N3Y3 721 aa12.41□□□□□ -0.42
TOP3A-211ENST00000581536 TMC2Q8TDI7 906 aa12.41□□□□□ -0.42
TOP3A-211ENST00000581536 GJA3Q9Y6H8 435 aa12.41□□□□□ -0.42
TOP3A-211ENST00000581536 SCN4AP35499 1836 aa12.41□□□□□ -0.42
TOP3A-211ENST00000581536 PPIP5K2O43314 1243 aa12.4□□□□□ -0.42
TOP3A-211ENST00000581536 PDE4AP27815 886 aa12.4□□□□□ -0.42
TOP3A-211ENST00000581536 GPSM2P81274 684 aa12.4□□□□□ -0.42
TOP3A-211ENST00000581536 SLFN5Q08AF3 891 aa12.4□□□□□ -0.42
TOP3A-211ENST00000581536 NEXNQ0ZGT2 675 aa12.4□□□□□ -0.42
TOP3A-211ENST00000581536 GRIPAP1Q4V328 841 aa12.4□□□□□ -0.42
TOP3A-211ENST00000581536 DNAAF4Q8WXU2 420 aa12.4□□□□□ -0.42
TOP3A-211ENST00000581536 JDP2Q8WYK2 163 aa12.4□□□□□ -0.42
TOP3A-211ENST00000581536 GPR101Q96P66 508 aaPredicted RBP12.4□□□□□ -0.42
TOP3A-211ENST00000581536 RTFDC1Q9BY42 306 aaPredicted RBP12.4□□□□□ -0.42
TOP3A-211ENST00000581536 TMX4Q9H1E5 349 aaPredicted RBP12.4□□□□□ -0.42
TOP3A-211ENST00000581536 GPHNQ9NQX3 736 aaPredicted RBP12.4□□□□□ -0.42
TOP3A-211ENST00000581536 POLLQ9UGP5 575 aa12.4□□□□□ -0.42
TOP3A-211ENST00000581536 WTIPA6NIX2 430 aaPredicted RBP12.39□□□□□ -0.43
TOP3A-211ENST00000581536 RIMBP2O15034 1052 aa12.39□□□□□ -0.43
TOP3A-211ENST00000581536 GCKRQ14397 625 aa12.39□□□□□ -0.43
TOP3A-211ENST00000581536 TTLL11Q8NHH1 800 aa12.39□□□□□ -0.43
TOP3A-211ENST00000581536 NSFL1CQ9UNZ2 370 aaKnown RBP12.39□□□□□ -0.43
TOP3A-211ENST00000581536 LRRC37AA6NMS7 1700 aa12.38□□□□□ -0.43
TOP3A-211ENST00000581536 CASP7P55210 303 aa12.38□□□□□ -0.43
TOP3A-211ENST00000581536 EIF6P56537 245 aaKnown RBP12.38□□□□□ -0.43
TOP3A-211ENST00000581536 FSTL1Q12841 308 aa12.38□□□□□ -0.43
TOP3A-211ENST00000581536 DIEXFQ68CQ4 756 aaKnown RBP12.38□□□□□ -0.43
TOP3A-211ENST00000581536 UBE3BQ7Z3V4 1068 aa12.38□□□□□ -0.43
TOP3A-211ENST00000581536 CRISPLD2Q9H0B8 497 aa12.38□□□□□ -0.43
TOP3A-211ENST00000581536 TAF1DQ9H5J8 278 aaPredicted RBP12.38□□□□□ -0.43
TOP3A-211ENST00000581536 TSHZ2Q9NRE2 1034 aa12.38□□□□□ -0.43
TOP3A-211ENST00000581536 POLR2AP24928 1970 aaKnown RBP12.38□□□□□ -0.43
TOP3A-211ENST00000581536 CDHR2Q9BYE9 1310 aa12.37□□□□□ -0.43
TOP3A-211ENST00000581536 LTBP1Q14766 1721 aa12.37□□□□□ -0.43
TOP3A-211ENST00000581536 C2orf72A6NCS6 295 aa12.37□□□□□ -0.43
TOP3A-211ENST00000581536 YDJCA8MPS7 323 aa12.37□□□□□ -0.43
TOP3A-211ENST00000581536 C6orf229H3BNL8 230 aa12.37□□□□□ -0.43
TOP3A-211ENST00000581536 CXCL9Q07325 125 aa12.37□□□□□ -0.43
TOP3A-211ENST00000581536 CCDC152Q4G0S7 254 aa12.37□□□□□ -0.43
TOP3A-211ENST00000581536 BEND3Q5T5X7 828 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms