RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 KRT24Q2M2I5 525 aa12.95□□□□□ -0.34
RFFL-208ENST00000581039 RTL5Q5HYW3 569 aaPredicted RBP12.95□□□□□ -0.34
RFFL-208ENST00000581039 REM2Q8IYK8 340 aaPredicted RBP12.95□□□□□ -0.34
RFFL-208ENST00000581039 TBC1D16Q8TBP0 767 aa12.95□□□□□ -0.34
RFFL-208ENST00000581039 CSRNP1Q96S65 589 aa12.95□□□□□ -0.34
RFFL-208ENST00000581039 DBF4Q9UBU7 674 aaPredicted RBP12.95□□□□□ -0.34
RFFL-208ENST00000581039 RTL9Q8NET4 1388 aa12.94□□□□□ -0.34
RFFL-208ENST00000581039 IRS4O14654 1257 aaPredicted RBP12.94□□□□□ -0.34
RFFL-208ENST00000581039 SLC10A3P09131 477 aa12.94□□□□□ -0.34
RFFL-208ENST00000581039 VIL1P09327 827 aaKnown RBP12.94□□□□□ -0.34
RFFL-208ENST00000581039 SOX10P56693 466 aa12.94□□□□□ -0.34
RFFL-208ENST00000581039 HDGFL1Q5TGJ6 251 aa12.94□□□□□ -0.34
RFFL-208ENST00000581039 GGA3Q9NZ52 723 aa12.94□□□□□ -0.34
RFFL-208ENST00000581039 DUOX1Q9NRD9 1551 aa12.94□□□□□ -0.34
RFFL-208ENST00000581039 HSP90B1P14625 803 aaKnown RBP12.93□□□□□ -0.34
RFFL-208ENST00000581039 SCARF1Q14162 830 aa12.93□□□□□ -0.34
RFFL-208ENST00000581039 CTU1Q7Z7A3 348 aaKnown RBP12.93□□□□□ -0.34
RFFL-208ENST00000581039 CDCA5Q96FF9 252 aa12.93□□□□□ -0.34
RFFL-208ENST00000581039 HYPKQ9NX55 129 aa12.93□□□□□ -0.34
RFFL-208ENST00000581039 ANKIB1Q9P2G1 1089 aa12.93□□□□□ -0.34
RFFL-208ENST00000581039 LAMB2P55268 1798 aa12.93□□□□□ -0.34
RFFL-208ENST00000581039 UFL1O94874 794 aa12.92□□□□□ -0.34
RFFL-208ENST00000581039 HOXB7P09629 217 aa12.92□□□□□ -0.34
RFFL-208ENST00000581039 TAF1P21675 1872 aa12.92□□□□□ -0.34
RFFL-208ENST00000581039 TRIM28Q13263 835 aaKnown RBP12.92□□□□□ -0.34
RFFL-208ENST00000581039 PODXL2Q9NZ53 605 aa12.92□□□□□ -0.34
RFFL-208ENST00000581039 GGA1Q9UJY5 639 aa12.92□□□□□ -0.34
RFFL-208ENST00000581039 ASTN2O75129 1339 aaPredicted RBP12.91□□□□□ -0.34
RFFL-208ENST00000581039 ZNF280AP59817 542 aaPredicted RBP12.91□□□□□ -0.34
RFFL-208ENST00000581039 FKBP1BP68106 108 aa12.91□□□□□ -0.34
RFFL-208ENST00000581039 ANGEL2Q5VTE6 544 aaKnown RBP12.91□□□□□ -0.34
RFFL-208ENST00000581039 RSBN1LQ6PCB5 846 aaPredicted RBP12.91□□□□□ -0.34
RFFL-208ENST00000581039 RIC3Q7Z5B4 369 aa12.91□□□□□ -0.34
RFFL-208ENST00000581039 CCDC146Q8IYE0 955 aa12.91□□□□□ -0.34
RFFL-208ENST00000581039 AGBL3Q8NEM8 1001 aa12.91□□□□□ -0.34
RFFL-208ENST00000581039 PDE4DIPQ5VU43 2346 aa12.9□□□□□ -0.34
RFFL-208ENST00000581039 USP17L8P0C7I0 530 aa12.9□□□□□ -0.34
RFFL-208ENST00000581039 RALBP1Q15311 655 aa12.9□□□□□ -0.34
RFFL-208ENST00000581039 RASAL3Q86YV0 1011 aa12.9□□□□□ -0.34
RFFL-208ENST00000581039 ZBTB38Q8NAP3 1195 aaPredicted RBP12.9□□□□□ -0.34
RFFL-208ENST00000581039 SEC31BQ9NQW1 1179 aa12.9□□□□□ -0.34
RFFL-208ENST00000581039 POLR2AP24928 1970 aaKnown RBP12.9□□□□□ -0.34
RFFL-208ENST00000581039 LRRC37AA6NMS7 1700 aa12.89□□□□□ -0.35
RFFL-208ENST00000581039 PKN2Q16513 984 aaKnown RBP12.89□□□□□ -0.35
RFFL-208ENST00000581039 CCDC152Q4G0S7 254 aa12.89□□□□□ -0.35
RFFL-208ENST00000581039 DUSP27Q5VZP5 1158 aa12.89□□□□□ -0.35
RFFL-208ENST00000581039 MYOZ2Q9NPC6 264 aa12.89□□□□□ -0.35
RFFL-208ENST00000581039 HDAC9Q9UKV0 1011 aa12.89□□□□□ -0.35
RFFL-208ENST00000581039 TRIM35Q9UPQ4 493 aa12.89□□□□□ -0.35
RFFL-208ENST00000581039 GOLGA2Q08379 1002 aa12.88□□□□□ -0.35
RFFL-208ENST00000581039 PODNQ7Z5L7 613 aa12.88□□□□□ -0.35
RFFL-208ENST00000581039 RUNDC1Q96C34 613 aa12.88□□□□□ -0.35
RFFL-208ENST00000581039 HPS5Q9UPZ3 1129 aa12.88□□□□□ -0.35
RFFL-208ENST00000581039 USP17L3A6NCW0 530 aa12.87□□□□□ -0.35
RFFL-208ENST00000581039 USP17L4A6NCW7 530 aa12.87□□□□□ -0.35
RFFL-208ENST00000581039 UBE2Q2LH0YL09 131 aa12.87□□□□□ -0.35
RFFL-208ENST00000581039 ATP2B4P23634 1241 aa12.87□□□□□ -0.35
RFFL-208ENST00000581039 TTLL12Q14166 644 aaPredicted RBP12.87□□□□□ -0.35
RFFL-208ENST00000581039 PRPF38BQ5VTL8 546 aaKnown RBP12.87□□□□□ -0.35
RFFL-208ENST00000581039 USP17L1Q7RTZ2 530 aa12.87□□□□□ -0.35
RFFL-208ENST00000581039 ANKRD18AQ8IVF6 992 aa12.87□□□□□ -0.35
RFFL-208ENST00000581039 CCDC85AQ96PX6 553 aaPredicted RBP12.87□□□□□ -0.35
RFFL-208ENST00000581039 GMLQ99445 158 aa12.87□□□□□ -0.35
RFFL-208ENST00000581039 MYD88Q99836 296 aa12.87□□□□□ -0.35
RFFL-208ENST00000581039 DDX60Q8IY21 1712 aaKnown RBP12.87□□□□□ -0.35
RFFL-208ENST00000581039 XDHP47989 1333 aa12.87□□□□□ -0.35
RFFL-208ENST00000581039 PITPNM2Q9BZ72 1349 aa12.87□□□□□ -0.35
RFFL-208ENST00000581039 PDE8AO60658 829 aa12.86□□□□□ -0.35
RFFL-208ENST00000581039 TBC1D8O95759 1140 aa12.86□□□□□ -0.35
RFFL-208ENST00000581039 PCCAP05165 728 aaPredicted RBP12.86□□□□□ -0.35
RFFL-208ENST00000581039 WDR43Q15061 677 aaKnown RBP eCLIP12.86□□□□□ -0.35
RFFL-208ENST00000581039 MOB2Q70IA6 237 aa12.86□□□□□ -0.35
RFFL-208ENST00000581039 CCDC191Q8NCU4 936 aa12.86□□□□□ -0.35
RFFL-208ENST00000581039 ZNF296Q8WUU4 475 aaPredicted RBP12.86□□□□□ -0.35
RFFL-208ENST00000581039 SCAF8Q9UPN6 1271 aaKnown RBP12.86□□□□□ -0.35
RFFL-208ENST00000581039 TNRC18O15417 2968 aaPredicted RBP12.86□□□□□ -0.35
RFFL-208ENST00000581039 AKAP11Q9UKA4 1901 aa12.86□□□□□ -0.35
RFFL-208ENST00000581039 NF2P35240 595 aa12.85□□□□□ -0.35
RFFL-208ENST00000581039 TM4SF4P48230 202 aa12.85□□□□□ -0.35
RFFL-208ENST00000581039 PRAMEF18Q5VWM3 479 aa12.85□□□□□ -0.35
RFFL-208ENST00000581039 OGFOD1Q8N543 542 aa12.85□□□□□ -0.35
RFFL-208ENST00000581039 JARID2Q92833 1246 aaPredicted RBP12.85□□□□□ -0.35
RFFL-208ENST00000581039 PHAXQ9H814 394 aaKnown RBP12.85□□□□□ -0.35
RFFL-208ENST00000581039 MBIPQ9NS73 344 aa12.85□□□□□ -0.35
RFFL-208ENST00000581039 CWC25Q9NXE8 425 aaPredicted RBP12.85□□□□□ -0.35
RFFL-208ENST00000581039 COL4A1P02462 1669 aa12.85□□□□□ -0.35
RFFL-208ENST00000581039 NBPF9Q3BBW0 867 aa12.84□□□□□ -0.35
RFFL-208ENST00000581039 ZNF609O15014 1411 aa12.84□□□□□ -0.35
RFFL-208ENST00000581039 GPR25O00155 361 aa12.83□□□□□ -0.36
RFFL-208ENST00000581039 ELL2O00472 640 aaPredicted RBP12.83□□□□□ -0.36
RFFL-208ENST00000581039 DDX58O95786 925 aaKnown RBP12.83□□□□□ -0.36
RFFL-208ENST00000581039 FBXW7Q969H0 707 aa12.83□□□□□ -0.36
RFFL-208ENST00000581039 CDC5LQ99459 802 aaKnown RBP12.83□□□□□ -0.36
RFFL-208ENST00000581039 ADAMTS8Q9UP79 889 aa12.83□□□□□ -0.36
RFFL-208ENST00000581039 SCN9AQ15858 1988 aa12.83□□□□□ -0.36
RFFL-208ENST00000581039 SREBF2Q12772 1141 aa12.82□□□□□ -0.36
RFFL-208ENST00000581039 MKRN3Q13064 507 aaKnown RBP12.82□□□□□ -0.36
RFFL-208ENST00000581039 NOM1Q5C9Z4 860 aaKnown RBP12.82□□□□□ -0.36
RFFL-208ENST00000581039 METTL22Q9BUU2 404 aaPredicted RBP12.82□□□□□ -0.36
RFFL-208ENST00000581039 CHMP4AQ9BY43 222 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms