RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 RIMBP2O15034 1052 aa12.87□□□□□ -0.35
SS18-210ENST00000578700 IPO8O15397 1037 aaKnown RBP12.87□□□□□ -0.35
SS18-210ENST00000578700 KIAA2012Q0VF49 1180 aa12.87□□□□□ -0.35
SS18-210ENST00000578700 PROSER3Q2NL68 480 aa12.87□□□□□ -0.35
SS18-210ENST00000578700 SAMD7Q7Z3H4 446 aa12.87□□□□□ -0.35
SS18-210ENST00000578700 MICALL2Q8IY33 904 aa12.87□□□□□ -0.35
SS18-210ENST00000578700 EXOC6Q8TAG9 804 aa12.87□□□□□ -0.35
SS18-210ENST00000578700 ZC3H15Q8WU90 426 aaKnown RBP12.87□□□□□ -0.35
SS18-210ENST00000578700 HHIPL1Q96JK4 782 aa12.87□□□□□ -0.35
SS18-210ENST00000578700 PGAP2Q9UHJ9 254 aa12.87□□□□□ -0.35
SS18-210ENST00000578700 TRMT112Q9UI30 125 aaKnown RBP12.87□□□□□ -0.35
SS18-210ENST00000578700 KIF16BQ96L93 1317 aa12.87□□□□□ -0.35
SS18-210ENST00000578700 YDJCA8MPS7 323 aa12.86□□□□□ -0.35
SS18-210ENST00000578700 ZNF853P0CG23 659 aa12.86□□□□□ -0.35
SS18-210ENST00000578700 NOGQ13253 232 aa12.86□□□□□ -0.35
SS18-210ENST00000578700 GRAPQ13588 217 aa12.86□□□□□ -0.35
SS18-210ENST00000578700 PDIA6Q15084 440 aa12.86□□□□□ -0.35
SS18-210ENST00000578700 ALDH1L2Q3SY69 923 aa12.86□□□□□ -0.35
SS18-210ENST00000578700 TBC1D10BQ4KMP7 808 aaPredicted RBP12.86□□□□□ -0.35
SS18-210ENST00000578700 COPS6Q7L5N1 327 aa12.86□□□□□ -0.35
SS18-210ENST00000578700 GRAPLQ8TC17 118 aaPredicted RBP12.86□□□□□ -0.35
SS18-210ENST00000578700 POLR2AP24928 1970 aaKnown RBP12.86□□□□□ -0.35
SS18-210ENST00000578700 AAMPQ13685 434 aa12.85□□□□□ -0.35
SS18-210ENST00000578700 ZKSCAN2Q63HK3 967 aa12.85□□□□□ -0.35
SS18-210ENST00000578700 NLRP10Q86W26 655 aa12.85□□□□□ -0.35
SS18-210ENST00000578700 XAGE3Q8WTP9 111 aa12.85□□□□□ -0.35
SS18-210ENST00000578700 CRBNQ96SW2 442 aa12.85□□□□□ -0.35
SS18-210ENST00000578700 DBNDD1Q9H9R9 158 aa12.85□□□□□ -0.35
SS18-210ENST00000578700 MBIPQ9NS73 344 aa12.85□□□□□ -0.35
SS18-210ENST00000578700 NSFL1CQ9UNZ2 370 aaKnown RBP12.85□□□□□ -0.35
SS18-210ENST00000578700 ERBB4Q15303 1308 aa12.85□□□□□ -0.35
SS18-210ENST00000578700 C6orf229H3BNL8 230 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 PSMD14O00487 310 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 CHL1O00533 1208 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 ZNF157P51786 506 aaPredicted RBP12.84□□□□□ -0.35
SS18-210ENST00000578700 DOK7Q18PE1 504 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 WASHC4Q2M389 1173 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 HSP90AB3PQ58FF7 597 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 B4GALNT3Q6L9W6 998 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 RGMBQ6NW40 437 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 KRT26Q7Z3Y9 468 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 FTSJ3Q8IY81 847 aaKnown RBP12.84□□□□□ -0.35
SS18-210ENST00000578700 C2orf69Q8N8R5 385 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 BABAM1Q9NWV8 329 aa12.84□□□□□ -0.35
SS18-210ENST00000578700 ADM5C9JUS6 153 aa12.83□□□□□ -0.36
SS18-210ENST00000578700 TRPA1O75762 1119 aa12.83□□□□□ -0.36
SS18-210ENST00000578700 SOX10P56693 466 aa12.83□□□□□ -0.36
SS18-210ENST00000578700 KIF23Q02241 960 aaPredicted RBP12.83□□□□□ -0.36
SS18-210ENST00000578700 TCIRG1Q13488 830 aa12.83□□□□□ -0.36
SS18-210ENST00000578700 TWISTNBQ3B726 338 aaPredicted RBP12.83□□□□□ -0.36
SS18-210ENST00000578700 RTL5Q5HYW3 569 aaPredicted RBP12.83□□□□□ -0.36
SS18-210ENST00000578700 LRP10Q7Z4F1 713 aa12.83□□□□□ -0.36
SS18-210ENST00000578700 DCPSQ96C86 337 aaKnown RBP12.83□□□□□ -0.36
SS18-210ENST00000578700 CHMP4AQ9BY43 222 aa12.83□□□□□ -0.36
SS18-210ENST00000578700 GBA2Q9HCG7 927 aaPredicted RBP12.83□□□□□ -0.36
SS18-210ENST00000578700 SH3TC1Q8TE82 1336 aa12.83□□□□□ -0.36
SS18-210ENST00000578700 CDHR2Q9BYE9 1310 aa12.83□□□□□ -0.36
SS18-210ENST00000578700 TAF1P21675 1872 aa12.82□□□□□ -0.36
SS18-210ENST00000578700 AKAP11Q9UKA4 1901 aa12.82□□□□□ -0.36
SS18-210ENST00000578700 G3V3G9 751 aa12.82□□□□□ -0.36
SS18-210ENST00000578700 EGFRP00533 1210 aa12.82□□□□□ -0.36
SS18-210ENST00000578700 DCAF8Q5TAQ9 597 aa12.82□□□□□ -0.36
SS18-210ENST00000578700 KCNQ5Q9NR82 932 aa12.82□□□□□ -0.36
SS18-210ENST00000578700 C20orf194Q5TEA3 1177 aa12.81□□□□□ -0.36
SS18-210ENST00000578700 SSH1Q8WYL5 1049 aa12.81□□□□□ -0.36
SS18-210ENST00000578700 DPF2Q92785 391 aa12.81□□□□□ -0.36
SS18-210ENST00000578700 CELF1Q92879 486 aaKnown RBP12.81□□□□□ -0.36
SS18-210ENST00000578700 CCDC102AQ96A19 550 aa12.81□□□□□ -0.36
SS18-210ENST00000578700 FAM89AQ96GI7 184 aa12.81□□□□□ -0.36
SS18-210ENST00000578700 CHMP4BQ9H444 224 aaKnown RBP12.81□□□□□ -0.36
SS18-210ENST00000578700 RNF186Q9NXI6 227 aa12.81□□□□□ -0.36
SS18-210ENST00000578700 FAM155AB1AL88 458 aaPredicted RBP12.8□□□□□ -0.36
SS18-210ENST00000578700 ATP5J2-PTCD1G3V325 749 aa12.8□□□□□ -0.36
SS18-210ENST00000578700 ECE2O60344 883 aa12.8□□□□□ -0.36
SS18-210ENST00000578700 VAMP4O75379 141 aa12.8□□□□□ -0.36
SS18-210ENST00000578700 GPSM2P81274 684 aa12.8□□□□□ -0.36
SS18-210ENST00000578700 KRT24Q2M2I5 525 aa12.8□□□□□ -0.36
SS18-210ENST00000578700 TMC4Q7Z404 712 aa12.8□□□□□ -0.36
SS18-210ENST00000578700 DZIP1LQ8IYY4 767 aaKnown RBP12.8□□□□□ -0.36
SS18-210ENST00000578700 POLLQ9UGP5 575 aa12.8□□□□□ -0.36
SS18-210ENST00000578700 LRRC37AA6NMS7 1700 aa12.79□□□□□ -0.36
SS18-210ENST00000578700 ELL2O00472 640 aaPredicted RBP12.79□□□□□ -0.36
SS18-210ENST00000578700 KIF4BQ2VIQ3 1234 aa12.79□□□□□ -0.36
SS18-210ENST00000578700 ATF7IPQ6VMQ6 1270 aa12.79□□□□□ -0.36
SS18-210ENST00000578700 SULF1Q8IWU6 871 aa12.79□□□□□ -0.36
SS18-210ENST00000578700 EYA3Q99504 573 aa12.79□□□□□ -0.36
SS18-210ENST00000578700 PCDH10Q9P2E7 1040 aa12.79□□□□□ -0.36
SS18-210ENST00000578700 C8orf58Q8NAV2 365 aa12.78□□□□□ -0.36
SS18-210ENST00000578700 ARHGAP45Q92619 1136 aa12.78□□□□□ -0.36
SS18-210ENST00000578700 CSRNP1Q96S65 589 aa12.78□□□□□ -0.36
SS18-210ENST00000578700 ZC3H12CQ9C0D7 883 aaKnown RBP12.78□□□□□ -0.36
SS18-210ENST00000578700 GGA3Q9NZ52 723 aa12.78□□□□□ -0.36
SS18-210ENST00000578700 NOB1Q9ULX3 412 aaKnown RBP12.78□□□□□ -0.36
SS18-210ENST00000578700 ASTN2O75129 1339 aaPredicted RBP12.78□□□□□ -0.36
SS18-210ENST00000578700 DDX60Q8IY21 1712 aaKnown RBP12.77□□□□□ -0.36
SS18-210ENST00000578700 RPS12P25398 132 aaKnown RBP12.77□□□□□ -0.37
SS18-210ENST00000578700 PANK1Q8TE04 598 aa12.77□□□□□ -0.37
SS18-210ENST00000578700 API5Q9BZZ5 524 aaKnown RBP12.77□□□□□ -0.37
SS18-210ENST00000578700 SAGE1Q9NXZ1 904 aa12.77□□□□□ -0.37
SS18-210ENST00000578700 CHPF2Q9P2E5 772 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms