RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ZNF316A6NFI3 1004 aaPredicted RBP17.6■□□□□ 0.41
CCDC40-216ENST00000576241 C6orf229H3BNL8 230 aa17.6■□□□□ 0.41
CCDC40-216ENST00000576241 PCCAP05165 728 aaPredicted RBP17.6■□□□□ 0.41
CCDC40-216ENST00000576241 RPS8P62241 208 aaKnown RBP17.6■□□□□ 0.41
CCDC40-216ENST00000576241 WASHC4Q2M389 1173 aa17.6■□□□□ 0.41
CCDC40-216ENST00000576241 GCC1Q96CN9 775 aa17.6■□□□□ 0.41
CCDC40-216ENST00000576241 BCL2L13Q9BXK5 485 aa17.6■□□□□ 0.41
CCDC40-216ENST00000576241 ZNF408Q9H9D4 720 aa17.6■□□□□ 0.41
CCDC40-216ENST00000576241 MAP3K2Q9Y2U5 619 aa17.6■□□□□ 0.41
CCDC40-216ENST00000576241 CDHR2Q9BYE9 1310 aa17.6■□□□□ 0.41
CCDC40-216ENST00000576241 LRRC37AA6NMS7 1700 aa17.6■□□□□ 0.41
CCDC40-216ENST00000576241 DUOX1Q9NRD9 1551 aa17.59■□□□□ 0.41
CCDC40-216ENST00000576241 IL16Q14005 1332 aa17.59■□□□□ 0.41
CCDC40-216ENST00000576241 TWISTNBQ3B726 338 aaPredicted RBP17.59■□□□□ 0.41
CCDC40-216ENST00000576241 CCDC152Q4G0S7 254 aa17.59■□□□□ 0.41
CCDC40-216ENST00000576241 EYA3Q99504 573 aa17.59■□□□□ 0.41
CCDC40-216ENST00000576241 PDE8AO60658 829 aa17.58■□□□□ 0.4
CCDC40-216ENST00000576241 GPSM2P81274 684 aa17.58■□□□□ 0.4
CCDC40-216ENST00000576241 NEXNQ0ZGT2 675 aa17.58■□□□□ 0.4
CCDC40-216ENST00000576241 KSR2Q6VAB6 950 aa17.58■□□□□ 0.4
CCDC40-216ENST00000576241 PI4KAP2A4QPH2 592 aa17.57■□□□□ 0.4
CCDC40-216ENST00000576241 YDJCA8MPS7 323 aa17.57■□□□□ 0.4
CCDC40-216ENST00000576241 RIMBP2O15034 1052 aa17.57■□□□□ 0.4
CCDC40-216ENST00000576241 NCBP3Q53F19 620 aaKnown RBP17.57■□□□□ 0.4
CCDC40-216ENST00000576241 HABP4Q5JVS0 413 aaKnown RBP17.57■□□□□ 0.4
CCDC40-216ENST00000576241 PI4KAP1Q8N8J0 262 aa17.57■□□□□ 0.4
CCDC40-216ENST00000576241 SEC31BQ9NQW1 1179 aa17.57■□□□□ 0.4
CCDC40-216ENST00000576241 JARID2Q92833 1246 aaPredicted RBP17.56■□□□□ 0.4
CCDC40-216ENST00000576241 DBNDD1Q9H9R9 158 aa17.56■□□□□ 0.4
CCDC40-216ENST00000576241 SAGE1Q9NXZ1 904 aa17.56■□□□□ 0.4
CCDC40-216ENST00000576241 ANKIB1Q9P2G1 1089 aa17.56■□□□□ 0.4
CCDC40-216ENST00000576241 POLLQ9UGP5 575 aa17.56■□□□□ 0.4
CCDC40-216ENST00000576241 TAF1P21675 1872 aa17.56■□□□□ 0.4
CCDC40-216ENST00000576241 H7C1D1 291 aa17.55■□□□□ 0.4
CCDC40-216ENST00000576241 CTU1Q7Z7A3 348 aaKnown RBP17.55■□□□□ 0.4
CCDC40-216ENST00000576241 TBC1D16Q8TBP0 767 aa17.55■□□□□ 0.4
CCDC40-216ENST00000576241 CCDC85AQ96PX6 553 aaPredicted RBP17.55■□□□□ 0.4
CCDC40-216ENST00000576241 G3V3G9 751 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 ECE2O60344 883 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 TRPA1O75762 1119 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 UFL1O94874 794 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 SLC4A2P04920 1241 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 HUNKP57058 714 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 DCAF8Q5TAQ9 597 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 ANKRD18AQ8IVF6 992 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 ZC3H15Q8WU90 426 aaKnown RBP17.54■□□□□ 0.4
CCDC40-216ENST00000576241 ZC3H12CQ9C0D7 883 aaKnown RBP17.54■□□□□ 0.4
CCDC40-216ENST00000576241 RNF186Q9NXI6 227 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 PODXL2Q9NZ53 605 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 CNOT7Q9UIV1 285 aaKnown RBP17.54■□□□□ 0.4
CCDC40-216ENST00000576241 GGA1Q9UJY5 639 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 HPS5Q9UPZ3 1129 aa17.54■□□□□ 0.4
CCDC40-216ENST00000576241 FANCIQ9NVI1 1328 aa17.53■□□□□ 0.4
CCDC40-216ENST00000576241 COL4A1P02462 1669 aa17.53■□□□□ 0.4
CCDC40-216ENST00000576241 PSMD14O00487 310 aa17.53■□□□□ 0.4
CCDC40-216ENST00000576241 IGKV5-2P06315 115 aa17.53■□□□□ 0.4
CCDC40-216ENST00000576241 CTSWP56202 376 aa17.53■□□□□ 0.4
CCDC40-216ENST00000576241 DOK7Q18PE1 504 aa17.53■□□□□ 0.4
CCDC40-216ENST00000576241 MICALL2Q8IY33 904 aa17.53■□□□□ 0.4
CCDC40-216ENST00000576241 DPF2Q92785 391 aa17.53■□□□□ 0.4
CCDC40-216ENST00000576241 CDC5LQ99459 802 aaKnown RBP17.53■□□□□ 0.4
CCDC40-216ENST00000576241 PGAP2Q9UHJ9 254 aa17.53■□□□□ 0.4
CCDC40-216ENST00000576241 SALL2Q9Y467 1007 aaPredicted RBP17.53■□□□□ 0.4
CCDC40-216ENST00000576241 FAM155AB1AL88 458 aaPredicted RBP17.52■□□□□ 0.4
CCDC40-216ENST00000576241 RPS12P25398 132 aaKnown RBP17.52■□□□□ 0.4
CCDC40-216ENST00000576241 WDR63Q8IWG1 891 aa17.52■□□□□ 0.4
CCDC40-216ENST00000576241 TRPM4Q8TD43 1214 aa17.52■□□□□ 0.4
CCDC40-216ENST00000576241 ZBTB12Q9Y330 459 aaPredicted RBP17.52■□□□□ 0.4
CCDC40-216ENST00000576241 AKAP11Q9UKA4 1901 aa17.52■□□□□ 0.4
CCDC40-216ENST00000576241 NEURL1BA8MQ27 555 aa17.51■□□□□ 0.39
CCDC40-216ENST00000576241 KIF23Q02241 960 aaPredicted RBP17.51■□□□□ 0.39
CCDC40-216ENST00000576241 CWF19L2Q2TBE0 894 aaKnown RBP17.51■□□□□ 0.39
CCDC40-216ENST00000576241 CDC37L1Q7L3B6 337 aa17.51■□□□□ 0.39
CCDC40-216ENST00000576241 G2E3Q7L622 706 aa17.51■□□□□ 0.39
CCDC40-216ENST00000576241 XDHP47989 1333 aa17.5■□□□□ 0.39
CCDC40-216ENST00000576241 HIRAP54198 1017 aaPredicted RBP17.5■□□□□ 0.39
CCDC40-216ENST00000576241 FLIIQ13045 1269 aa17.5■□□□□ 0.39
CCDC40-216ENST00000576241 FKBP5Q13451 457 aaPredicted RBP17.5■□□□□ 0.39
CCDC40-216ENST00000576241 RGMBQ6NW40 437 aa17.5■□□□□ 0.39
CCDC40-216ENST00000576241 DLK2Q6UY11 383 aa17.5■□□□□ 0.39
CCDC40-216ENST00000576241 SHTN1A0MZ66 631 aa17.49■□□□□ 0.39
CCDC40-216ENST00000576241 UBE3BQ7Z3V4 1068 aa17.49■□□□□ 0.39
CCDC40-216ENST00000576241 TTLL11Q8NHH1 800 aa17.49■□□□□ 0.39
CCDC40-216ENST00000576241 MYH16Q9H6N6 1097 aa17.49■□□□□ 0.39
CCDC40-216ENST00000576241 ATP2B4P23634 1241 aa17.48■□□□□ 0.39
CCDC40-216ENST00000576241 TBC1D10BQ4KMP7 808 aaPredicted RBP17.48■□□□□ 0.39
CCDC40-216ENST00000576241 SAMD7Q7Z3H4 446 aa17.48■□□□□ 0.39
CCDC40-216ENST00000576241 KCNQ5Q9NR82 932 aa17.48■□□□□ 0.39
CCDC40-216ENST00000576241 RTL9Q8NET4 1388 aa17.48■□□□□ 0.39
CCDC40-216ENST00000576241 H7C1W4 665 aa17.47■□□□□ 0.39
CCDC40-216ENST00000576241 EXOSC9Q06265 439 aaKnown RBP17.47■□□□□ 0.39
CCDC40-216ENST00000576241 GCKRQ14397 625 aa17.47■□□□□ 0.39
CCDC40-216ENST00000576241 USP48Q86UV5 1035 aa17.47■□□□□ 0.39
CCDC40-216ENST00000576241 FAM9BQ8IZU0 186 aa17.47■□□□□ 0.39
CCDC40-216ENST00000576241 DNAAF4Q8WXU2 420 aa17.47■□□□□ 0.39
CCDC40-216ENST00000576241 CCDC102AQ96A19 550 aa17.47■□□□□ 0.39
CCDC40-216ENST00000576241 GREM2Q9H772 168 aa17.47■□□□□ 0.39
CCDC40-216ENST00000576241 BSDC1Q9NW68 430 aaPredicted RBP17.47■□□□□ 0.39
CCDC40-216ENST00000576241 VAMP4O75379 141 aa17.46■□□□□ 0.39
CCDC40-216ENST00000576241 VIL1P09327 827 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms