RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 LRRFIP2Q9Y608 721 aaKnown RBP11.95□□□□□ -0.5
CCDC40-214ENST00000575431 DICER1Q9UPY3 1922 aaKnown RBP11.94□□□□□ -0.5
CCDC40-214ENST00000575431 ATP2B4P23634 1241 aa11.94□□□□□ -0.5
CCDC40-214ENST00000575431 RASSF7Q02833 373 aa11.94□□□□□ -0.5
CCDC40-214ENST00000575431 CNNM1Q9NRU3 951 aa11.94□□□□□ -0.5
CCDC40-214ENST00000575431 GGA1Q9UJY5 639 aa11.94□□□□□ -0.5
CCDC40-214ENST00000575431 LEMD3Q9Y2U8 911 aa11.94□□□□□ -0.5
CCDC40-214ENST00000575431 CCDC88AQ3V6T2 1871 aa11.93□□□□□ -0.5
CCDC40-214ENST00000575431 C6orf229H3BNL8 230 aa11.93□□□□□ -0.5
CCDC40-214ENST00000575431 PLIN1O60240 522 aa11.93□□□□□ -0.5
CCDC40-214ENST00000575431 GPSM2P81274 684 aa11.93□□□□□ -0.5
CCDC40-214ENST00000575431 DPY19L2Q6NUT2 758 aa11.93□□□□□ -0.5
CCDC40-214ENST00000575431 TBC1D16Q8TBP0 767 aa11.93□□□□□ -0.5
CCDC40-214ENST00000575431 ZC3H12CQ9C0D7 883 aaKnown RBP11.93□□□□□ -0.5
CCDC40-214ENST00000575431 ZNF277Q9NRM2 450 aaPredicted RBP11.93□□□□□ -0.5
CCDC40-214ENST00000575431 MROH5Q6ZUA9 1318 aa11.92□□□□□ -0.5
CCDC40-214ENST00000575431 COL4A1P02462 1669 aa11.92□□□□□ -0.5
CCDC40-214ENST00000575431 PPIP5K2O43314 1243 aa11.92□□□□□ -0.5
CCDC40-214ENST00000575431 RRP1P56182 461 aaKnown RBP11.92□□□□□ -0.5
CCDC40-214ENST00000575431 CHRNDQ07001 517 aa11.92□□□□□ -0.5
CCDC40-214ENST00000575431 KIAA2012Q0VF49 1180 aa11.92□□□□□ -0.5
CCDC40-214ENST00000575431 WASHC4Q2M389 1173 aa11.92□□□□□ -0.5
CCDC40-214ENST00000575431 LARGE2Q8N3Y3 721 aa11.92□□□□□ -0.5
CCDC40-214ENST00000575431 COG6Q9Y2V7 657 aa11.92□□□□□ -0.5
CCDC40-214ENST00000575431 SPEF2Q9C093 1822 aa11.92□□□□□ -0.5
CCDC40-214ENST00000575431 LTBP1Q14766 1721 aa11.91□□□□□ -0.5
CCDC40-214ENST00000575431 EYA2O00167 538 aa11.91□□□□□ -0.5
CCDC40-214ENST00000575431 SRGAP3O43295 1099 aa11.91□□□□□ -0.5
CCDC40-214ENST00000575431 CIAO1O76071 339 aa11.91□□□□□ -0.5
CCDC40-214ENST00000575431 UFL1O94874 794 aa11.91□□□□□ -0.5
CCDC40-214ENST00000575431 RFX5P48382 616 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-214ENST00000575431 PRELPP51888 382 aa11.91□□□□□ -0.5
CCDC40-214ENST00000575431 NIM1KQ8IY84 436 aa11.91□□□□□ -0.5
CCDC40-214ENST00000575431 ZNF594Q96JF6 807 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-214ENST00000575431 COPRSQ9NQ92 184 aa11.91□□□□□ -0.5
CCDC40-214ENST00000575431 POLLQ9UGP5 575 aa11.91□□□□□ -0.5
CCDC40-214ENST00000575431 SRCAPQ6ZRS2 3230 aa11.91□□□□□ -0.5
CCDC40-214ENST00000575431 ZNF804BA4D1E1 1349 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 KDM2BQ8NHM5 1336 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 G3V3G9 751 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 KCNJ4P48050 445 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 EIF6P56537 245 aaKnown RBP11.9□□□□□ -0.5
CCDC40-214ENST00000575431 ATP8B2P98198 1209 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 PTPN12Q05209 780 aaKnown RBP11.9□□□□□ -0.5
CCDC40-214ENST00000575431 DCAF8Q5TAQ9 597 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 TIAM2Q8IVF5 1701 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 RPAP2Q8IXW5 612 aaPredicted RBP11.9□□□□□ -0.5
CCDC40-214ENST00000575431 DUOX1Q9NRD9 1551 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 ZBTB40Q9NUA8 1239 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 ZNRF3Q9ULT6 936 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 RIPOR2Q9Y4F9 1068 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 MED23Q9ULK4 1368 aa11.9□□□□□ -0.5
CCDC40-214ENST00000575431 GLTPD2A6NH11 291 aa11.89□□□□□ -0.51
CCDC40-214ENST00000575431 FZD9O00144 591 aa11.89□□□□□ -0.51
CCDC40-214ENST00000575431 IL15P40933 162 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-214ENST00000575431 UBE4AQ14139 1066 aa11.89□□□□□ -0.51
CCDC40-214ENST00000575431 AOC3Q16853 763 aa11.89□□□□□ -0.51
CCDC40-214ENST00000575431 HMMRO75330 724 aa11.88□□□□□ -0.51
CCDC40-214ENST00000575431 PDE8BO95263 885 aa11.88□□□□□ -0.51
CCDC40-214ENST00000575431 AAMPQ13685 434 aa11.88□□□□□ -0.51
CCDC40-214ENST00000575431 METTL24Q5JXM2 366 aa11.88□□□□□ -0.51
CCDC40-214ENST00000575431 C20orf194Q5TEA3 1177 aa11.88□□□□□ -0.51
CCDC40-214ENST00000575431 C15orf52Q6ZUT6 534 aaKnown RBP11.88□□□□□ -0.51
CCDC40-214ENST00000575431 PODNQ7Z5L7 613 aa11.88□□□□□ -0.51
CCDC40-214ENST00000575431 SSH3Q8TE77 659 aa11.88□□□□□ -0.51
CCDC40-214ENST00000575431 RIMBP2O15034 1052 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 TAF5LO75529 589 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 POLA2Q14181 598 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 TNIP1Q15025 636 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 LRRC24Q50LG9 513 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 SLC51AQ86UW1 340 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 GPC2Q8N158 579 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 KLHDC4Q8TBB5 520 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 PUS3Q9BZE2 481 aaKnown RBP11.87□□□□□ -0.51
CCDC40-214ENST00000575431 COA1Q9GZY4 146 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 CEP126Q9P2H0 1117 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 A0A1B0GUL6 1792 aa11.87□□□□□ -0.51
CCDC40-214ENST00000575431 PNMA6EA0A0J9YXQ4 647 aa11.86□□□□□ -0.51
CCDC40-214ENST00000575431 G3BP1Q13283 466 aaKnown RBP eCLIP11.86□□□□□ -0.51
CCDC40-214ENST00000575431 CEP85Q6P2H3 762 aa11.86□□□□□ -0.51
CCDC40-214ENST00000575431 HELBQ8NG08 1087 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-214ENST00000575431 C1orf115Q9H7X2 142 aa11.86□□□□□ -0.51
CCDC40-214ENST00000575431 GPBP1L1Q9HC44 474 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-214ENST00000575431 ECE2O60344 883 aa11.85□□□□□ -0.51
CCDC40-214ENST00000575431 IFIT1P09914 478 aaKnown RBP11.85□□□□□ -0.51
CCDC40-214ENST00000575431 PUM3Q15397 648 aaKnown RBP11.85□□□□□ -0.51
CCDC40-214ENST00000575431 HSP90AB4PQ58FF6 505 aa11.85□□□□□ -0.51
CCDC40-214ENST00000575431 CIAPIN1Q6FI81 312 aa11.85□□□□□ -0.51
CCDC40-214ENST00000575431 ATG9AQ7Z3C6 839 aa11.85□□□□□ -0.51
CCDC40-214ENST00000575431 ZNF804AQ7Z570 1209 aa11.85□□□□□ -0.51
CCDC40-214ENST00000575431 VGLL2Q8N8G2 317 aa11.85□□□□□ -0.51
CCDC40-214ENST00000575431 ZNF784Q8NCA9 323 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-214ENST00000575431 SIL1Q9H173 461 aa11.85□□□□□ -0.51
CCDC40-214ENST00000575431 AKAP2Q9Y2D5 859 aa11.85□□□□□ -0.51
CCDC40-214ENST00000575431 NOP58Q9Y2X3 529 aaKnown RBP11.85□□□□□ -0.51
CCDC40-214ENST00000575431 SUPT16HQ9Y5B9 1047 aaKnown RBP11.85□□□□□ -0.51
CCDC40-214ENST00000575431 IQCA1LA6NCM1 817 aa11.84□□□□□ -0.51
CCDC40-214ENST00000575431 SURF6O75683 361 aaKnown RBP11.84□□□□□ -0.51
CCDC40-214ENST00000575431 CXCL9Q07325 125 aa11.84□□□□□ -0.51
CCDC40-214ENST00000575431 CAVIN4Q5BKX8 364 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms