RNA–Protein interactions for RNA: ENST00000574911.5

NCBP3-204, Transcript of nuclear cap binding subunit 3, humanhuman

TSL 1 (best)

Gene NCBP3, Length 2,701 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3-204ENST00000574911 NKX1-1Q15270 411 aaPredicted RBP10.59□□□□□ -0.71
NCBP3-204ENST00000574911 ZCRB1Q8TBF4 217 aaKnown RBP10.59□□□□□ -0.71
NCBP3-204ENST00000574911 PAG1Q9NWQ8 432 aa10.59□□□□□ -0.71
NCBP3-204ENST00000574911 CHMP3Q9Y3E7 222 aa10.59□□□□□ -0.71
NCBP3-204ENST00000574911 WDR17Q8IZU2 1322 aa10.59□□□□□ -0.71
NCBP3-204ENST00000574911 ZMYM1Q5SVZ6 1142 aa10.59□□□□□ -0.71
NCBP3-204ENST00000574911 SMARCC2Q8TAQ2 1214 aa10.59□□□□□ -0.71
NCBP3-204ENST00000574911 SPATA32Q96LK8 384 aa10.59□□□□□ -0.71
NCBP3-204ENST00000574911 DSCC1Q9BVC3 393 aa10.59□□□□□ -0.71
NCBP3-204ENST00000574911 NUP62CLQ9H1M0 184 aa10.59□□□□□ -0.71
NCBP3-204ENST00000574911 EYA2O00167 538 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 GOLIM4O00461 696 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 PFKFB2O60825 505 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 CIAO1O76071 339 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 A1BGP04217 495 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 HMGB1P09429 215 aaKnown RBP10.58□□□□□ -0.72
NCBP3-204ENST00000574911 SCRN1Q12765 414 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 HSP90AA2PQ14568 343 aaPredicted RBP10.58□□□□□ -0.72
NCBP3-204ENST00000574911 MAP3K11Q16584 847 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 CCDC191Q8NCU4 936 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 NEUROD6Q96NK8 337 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 LLPHQ9BRT6 129 aaKnown RBP10.58□□□□□ -0.72
NCBP3-204ENST00000574911 ATG3Q9NT62 314 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 TFIP11Q9UBB9 837 aaKnown RBP10.58□□□□□ -0.72
NCBP3-204ENST00000574911 TIMM10P62072 90 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 EXOSC10Q01780 885 aaKnown RBP10.58□□□□□ -0.72
NCBP3-204ENST00000574911 RBM43Q6ZSC3 357 aaKnown RBP10.58□□□□□ -0.72
NCBP3-204ENST00000574911 DHX32Q7L7V1 743 aaKnown RBP10.58□□□□□ -0.72
NCBP3-204ENST00000574911 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.58□□□□□ -0.72
NCBP3-204ENST00000574911 PIBF1Q8WXW3 757 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 BRF1Q92994 677 aa10.58□□□□□ -0.72
NCBP3-204ENST00000574911 ZNF830Q96NB3 372 aaPredicted RBP10.58□□□□□ -0.72
NCBP3-204ENST00000574911 TNS2Q63HR2 1409 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 HSP90B1P14625 803 aaKnown RBP10.57□□□□□ -0.72
NCBP3-204ENST00000574911 LRRC24Q50LG9 513 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 AGXT2Q9BYV1 514 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 ZSCAN16Q9H4T2 348 aaPredicted RBP10.57□□□□□ -0.72
NCBP3-204ENST00000574911 DDX19AQ9NUU7 478 aaKnown RBP10.57□□□□□ -0.72
NCBP3-204ENST00000574911 MRVI1Q9Y6F6 885 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 TYRO3Q06418 890 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 SLFNL1Q499Z3 407 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 SASS6Q6UVJ0 657 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 FAM200AQ8TCP9 573 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 PGBD1Q96JS3 809 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 CLSTN2Q9H4D0 955 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 CCDC9Q9Y3X0 531 aaKnown RBP10.57□□□□□ -0.72
NCBP3-204ENST00000574911 RNF113AO15541 343 aaKnown RBP10.57□□□□□ -0.72
NCBP3-204ENST00000574911 MPNDQ8N594 471 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 NSUN7Q8NE18 718 aaKnown RBP10.57□□□□□ -0.72
NCBP3-204ENST00000574911 ZNF594Q96JF6 807 aaPredicted RBP10.57□□□□□ -0.72
NCBP3-204ENST00000574911 LRRC2Q9BYS8 371 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 ZBTB3Q9H5J0 574 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 TTC12Q9H892 705 aaPredicted RBP10.57□□□□□ -0.72
NCBP3-204ENST00000574911 DACT1Q9NYF0 836 aa10.57□□□□□ -0.72
NCBP3-204ENST00000574911 LAMA4Q16363 1823 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 SPEF2Q9C093 1822 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 HSPD1P10809 573 aaKnown RBP10.56□□□□□ -0.72
NCBP3-204ENST00000574911 CAMK4Q16566 473 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 TOM1L2Q6ZVM7 507 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 ISCA1Q9BUE6 129 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 TNMDQ9H2S6 317 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 COL5A2P05997 1499 aaPredicted RBP10.56□□□□□ -0.72
NCBP3-204ENST00000574911 MAST3O60307 1309 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 UQCRHLA0A096LP55 91 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 A0A1B0GUL7 405 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 GOLGA6L4A6NEF3 574 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 CTDNEP1O95476 244 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 UQCRHP07919 91 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 IFIT1P09914 478 aaKnown RBP10.56□□□□□ -0.72
NCBP3-204ENST00000574911 NAA16Q6N069 864 aaPredicted RBP10.56□□□□□ -0.72
NCBP3-204ENST00000574911 BRINP3Q76B58 766 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 DDX11Q96FC9 970 aa10.56□□□□□ -0.72
NCBP3-204ENST00000574911 SHANK3Q9BYB0 1731 aa10.55□□□□□ -0.72
NCBP3-204ENST00000574911 E7EWF7 191 aa10.55□□□□□ -0.72
NCBP3-204ENST00000574911 H3BQV1 296 aa10.55□□□□□ -0.72
NCBP3-204ENST00000574911 ADD1P35611 737 aaKnown RBP10.55□□□□□ -0.72
NCBP3-204ENST00000574911 NOLC1Q14978 699 aaKnown RBP eCLIP10.55□□□□□ -0.72
NCBP3-204ENST00000574911 IFFO2Q5TF58 517 aa10.55□□□□□ -0.72
NCBP3-204ENST00000574911 PUS3Q9BZE2 481 aaKnown RBP10.55□□□□□ -0.72
NCBP3-204ENST00000574911 PRDM11Q9NQV5 511 aa10.55□□□□□ -0.72
NCBP3-204ENST00000574911 SPTLC3Q9NUV7 552 aa10.55□□□□□ -0.72
NCBP3-204ENST00000574911 CFAP45Q9UL16 551 aa10.55□□□□□ -0.72
NCBP3-204ENST00000574911 TPM3P06753 285 aa10.55□□□□□ -0.72
NCBP3-204ENST00000574911 APOBRQ0VD83 1088 aa10.55□□□□□ -0.72
NCBP3-204ENST00000574911 CARD10Q9BWT7 1032 aa10.55□□□□□ -0.72
NCBP3-204ENST00000574911 XIRP1Q702N8 1843 aaKnown RBP10.54□□□□□ -0.72
NCBP3-204ENST00000574911 A0A0G2JLW4 131 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 M0R2C6 588 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 NR1I2O75469 434 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 IL2RBP14784 551 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 HMGN5P82970 282 aaKnown RBP10.54□□□□□ -0.72
NCBP3-204ENST00000574911 FGD1P98174 961 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 CKAP2LQ8IYA6 745 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 UBE2Q2Q8WVN8 375 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 FBXO3Q9UK99 471 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 SALL1Q9NSC2 1324 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 PTPDC1A2A3K4 754 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 PLCB2Q00722 1185 aa10.54□□□□□ -0.72
NCBP3-204ENST00000574911 TRIM28Q13263 835 aaKnown RBP10.54□□□□□ -0.72
NCBP3-204ENST00000574911 TCIRG1Q13488 830 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms