RNA–Protein interactions for RNA: ENST00000574095.1

NPLOC4-215, Transcript of NPL4 homolog, ubiquitin recognition factor, human

TSL 3

Gene NPLOC4, Length 277 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPLOC4-215	ENST00000574095	CASP7	P55210	303 aa		33.19	■■■□□ 2.9
NPLOC4-215	ENST00000574095	USP50	Q70EL3	339 aa	Predicted RBP	33.19	■■■□□ 2.9
NPLOC4-215	ENST00000574095	CREBZF	Q9NS37	354 aa		33.19	■■■□□ 2.9
NPLOC4-215	ENST00000574095	JMY	Q8N9B5	988 aa		33.18	■■■□□ 2.9
NPLOC4-215	ENST00000574095	ZC3H12C	Q9C0D7	883 aa	Known RBP	33.18	■■■□□ 2.9
NPLOC4-215	ENST00000574095	GGA1	Q9UJY5	639 aa		33.18	■■■□□ 2.9
NPLOC4-215	ENST00000574095	SPEF2	Q9C093	1822 aa		33.18	■■■□□ 2.9
NPLOC4-215	ENST00000574095	PLA2G12B	Q9BX93	195 aa		33.17	■■■□□ 2.9
NPLOC4-215	ENST00000574095	ADARB2	Q9NS39	739 aa	Known RBP	33.17	■■■□□ 2.9
NPLOC4-215	ENST00000574095	ECE2	O60344	883 aa		33.16	■■■□□ 2.9
NPLOC4-215	ENST00000574095	BEND3	Q5T5X7	828 aa		33.16	■■■□□ 2.9
NPLOC4-215	ENST00000574095	RTL9	Q8NET4	1388 aa		33.15	■■■□□ 2.9
NPLOC4-215	ENST00000574095	KCNQ5	Q9NR82	932 aa		33.15	■■■□□ 2.9
NPLOC4-215	ENST00000574095	PSMD14	O00487	310 aa		33.14	■■■□□ 2.9
NPLOC4-215	ENST00000574095	ZBTB12	Q9Y330	459 aa	Predicted RBP	33.14	■■■□□ 2.9
NPLOC4-215	ENST00000574095	XDH	P47989	1333 aa		33.13	■■■□□ 2.89
NPLOC4-215	ENST00000574095		E9PSI1	815 aa		33.13	■■■□□ 2.89
NPLOC4-215	ENST00000574095	BSDC1	Q9NW68	430 aa	Predicted RBP	33.13	■■■□□ 2.89
NPLOC4-215	ENST00000574095	SHTN1	A0MZ66	631 aa		33.12	■■■□□ 2.89
NPLOC4-215	ENST00000574095	CCER2	I3L3R5	266 aa		33.12	■■■□□ 2.89
NPLOC4-215	ENST00000574095	CNOT7	Q9UIV1	285 aa	Known RBP	33.12	■■■□□ 2.89
NPLOC4-215	ENST00000574095	MINPP1	Q9UNW1	487 aa		33.12	■■■□□ 2.89
NPLOC4-215	ENST00000574095	TMEM88B	A6NKF7	163 aa		33.11	■■■□□ 2.89
NPLOC4-215	ENST00000574095		G3V3G9	751 aa		33.11	■■■□□ 2.89
NPLOC4-215	ENST00000574095	CSF1R	P07333	972 aa		33.11	■■■□□ 2.89
NPLOC4-215	ENST00000574095	ATP2B4	P23634	1241 aa		33.11	■■■□□ 2.89
NPLOC4-215	ENST00000574095	FAM161A	Q3B820	660 aa		33.11	■■■□□ 2.89
NPLOC4-215	ENST00000574095	DCAF8	Q5TAQ9	597 aa		33.11	■■■□□ 2.89
NPLOC4-215	ENST00000574095	MKRN1	Q9UHC7	482 aa	Known RBP	33.11	■■■□□ 2.89
NPLOC4-215	ENST00000574095	WTIP	A6NIX2	430 aa	Predicted RBP	33.1	■■■□□ 2.89
NPLOC4-215	ENST00000574095	ITGA6	P23229	1130 aa		33.1	■■■□□ 2.89
NPLOC4-215	ENST00000574095	SLFN5	Q08AF3	891 aa		33.1	■■■□□ 2.89
NPLOC4-215	ENST00000574095	SCN9A	Q15858	1988 aa		33.09	■■■□□ 2.89
NPLOC4-215	ENST00000574095	IGHMBP2	P38935	993 aa	Known RBP	33.09	■■■□□ 2.89
NPLOC4-215	ENST00000574095	SLC4A10	Q6U841	1118 aa		33.09	■■■□□ 2.89
NPLOC4-215	ENST00000574095	CDCA7L	Q96GN5	454 aa		33.09	■■■□□ 2.89
NPLOC4-215	ENST00000574095	FMR1	Q06787	632 aa	Known RBP eCLIP	33.08	■■■□□ 2.89
NPLOC4-215	ENST00000574095	MICALL2	Q8IY33	904 aa		33.08	■■■□□ 2.89
NPLOC4-215	ENST00000574095		H7C1D1	291 aa		33.07	■■■□□ 2.88
NPLOC4-215	ENST00000574095	HIRA	P54198	1017 aa	Predicted RBP	33.07	■■■□□ 2.88
NPLOC4-215	ENST00000574095	MRPL50	Q8N5N7	158 aa	Known RBP	33.07	■■■□□ 2.88
NPLOC4-215	ENST00000574095	DPF2	Q92785	391 aa		33.07	■■■□□ 2.88
NPLOC4-215	ENST00000574095	PCNT	O95613	3336 aa		33.06	■■■□□ 2.88
NPLOC4-215	ENST00000574095	FOXO4	P98177	505 aa		33.06	■■■□□ 2.88
NPLOC4-215	ENST00000574095	TRPM4	Q8TD43	1214 aa		33.06	■■■□□ 2.88
NPLOC4-215	ENST00000574095	GRM8	O00222	908 aa		33.04	■■■□□ 2.88
NPLOC4-215	ENST00000574095	TRAF5	O00463	557 aa		33.04	■■■□□ 2.88
NPLOC4-215	ENST00000574095	CCT4	P50991	539 aa	Known RBP	33.04	■■■□□ 2.88
NPLOC4-215	ENST00000574095	MPHOSPH8	Q99549	860 aa		33.04	■■■□□ 2.88
NPLOC4-215	ENST00000574095	SRCIN1	Q9C0H9	1055 aa		33.04	■■■□□ 2.88
NPLOC4-215	ENST00000574095	SAMD7	Q7Z3H4	446 aa		33.03	■■■□□ 2.88
NPLOC4-215	ENST00000574095	C9orf78	Q9NZ63	289 aa	Predicted RBP	33.03	■■■□□ 2.88
NPLOC4-215	ENST00000574095	CHMP3	Q9Y3E7	222 aa		33.03	■■■□□ 2.88
NPLOC4-215	ENST00000574095	CNTNAP1	P78357	1384 aa		33.02	■■■□□ 2.88
NPLOC4-215	ENST00000574095	ANKRD18B	A2A2Z9	1011 aa		33.02	■■■□□ 2.88
NPLOC4-215	ENST00000574095	ALDH1L1	O75891	902 aa		33.02	■■■□□ 2.88
NPLOC4-215	ENST00000574095	VIL1	P09327	827 aa	Known RBP	33.02	■■■□□ 2.88
NPLOC4-215	ENST00000574095	RPS12	P25398	132 aa	Known RBP	33.02	■■■□□ 2.88
NPLOC4-215	ENST00000574095	PGAP2	Q9UHJ9	254 aa		33.02	■■■□□ 2.88
NPLOC4-215	ENST00000574095	EPHA10	Q5JZY3	1008 aa		33.01	■■■□□ 2.87
NPLOC4-215	ENST00000574095	SSH1	Q8WYL5	1049 aa		33.01	■■■□□ 2.87
NPLOC4-215	ENST00000574095	LMBR1L	Q6UX01	489 aa		33	■■■□□ 2.87
NPLOC4-215	ENST00000574095	ZC3H15	Q8WU90	426 aa	Known RBP	33	■■■□□ 2.87
NPLOC4-215	ENST00000574095	TRPM7	Q96QT4	1865 aa		32.99	■■■□□ 2.87
NPLOC4-215	ENST00000574095	MED23	Q9ULK4	1368 aa		32.99	■■■□□ 2.87
NPLOC4-215	ENST00000574095	IFIT5	Q13325	482 aa	Known RBP	32.99	■■■□□ 2.87
NPLOC4-215	ENST00000574095	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	32.99	■■■□□ 2.87
NPLOC4-215	ENST00000574095	RBM26	Q5T8P6	1007 aa	Known RBP	32.99	■■■□□ 2.87
NPLOC4-215	ENST00000574095	GLIS2	Q9BZE0	524 aa	Predicted RBP	32.99	■■■□□ 2.87
NPLOC4-215	ENST00000574095	ANKRD2	Q9GZV1	360 aa		32.99	■■■□□ 2.87
NPLOC4-215	ENST00000574095	LEMD3	Q9Y2U8	911 aa		32.99	■■■□□ 2.87
NPLOC4-215	ENST00000574095	PSME4	Q14997	1843 aa		32.98	■■■□□ 2.87
NPLOC4-215	ENST00000574095	EGFR	P00533	1210 aa		32.98	■■■□□ 2.87
NPLOC4-215	ENST00000574095	PODN	Q7Z5L7	613 aa		32.98	■■■□□ 2.87
NPLOC4-215	ENST00000574095	TRMT2A	Q8IZ69	625 aa	Known RBP	32.98	■■■□□ 2.87
NPLOC4-215	ENST00000574095	CST9	Q5W186	159 aa		32.97	■■■□□ 2.87
NPLOC4-215	ENST00000574095	ABT1	Q9ULW3	272 aa	Known RBP	32.97	■■■□□ 2.87
NPLOC4-215	ENST00000574095	VEGFB	P49765	207 aa		32.96	■■■□□ 2.87
NPLOC4-215	ENST00000574095	CHRND	Q07001	517 aa		32.96	■■■□□ 2.87
NPLOC4-215	ENST00000574095	DEFB115	Q30KQ5	88 aa		32.96	■■■□□ 2.87
NPLOC4-215	ENST00000574095	RSBN1L	Q6PCB5	846 aa	Predicted RBP	32.96	■■■□□ 2.87
NPLOC4-215	ENST00000574095	TXNRD3	Q86VQ6	643 aa		32.96	■■■□□ 2.87
NPLOC4-215	ENST00000574095	ZNF804B	A4D1E1	1349 aa		32.96	■■■□□ 2.87
NPLOC4-215	ENST00000574095	HSPA1A	P0DMV8	641 aa	Known RBP	32.95	■■■□□ 2.87
NPLOC4-215	ENST00000574095	HSPA1B	P0DMV9	641 aa	Known RBP	32.95	■■■□□ 2.87
NPLOC4-215	ENST00000574095	PTPRC	P08575	1304 aa		32.95	■■■□□ 2.86
NPLOC4-215	ENST00000574095	USP17L3	A6NCW0	530 aa		32.94	■■■□□ 2.86
NPLOC4-215	ENST00000574095	USP17L4	A6NCW7	530 aa		32.94	■■■□□ 2.86
NPLOC4-215	ENST00000574095	RASSF10	A6NK89	507 aa		32.94	■■■□□ 2.86
NPLOC4-215	ENST00000574095	USP17L1	Q7RTZ2	530 aa		32.94	■■■□□ 2.86
NPLOC4-215	ENST00000574095	ZNF594	Q96JF6	807 aa	Predicted RBP	32.94	■■■□□ 2.86
NPLOC4-215	ENST00000574095	NBPF7	P0C2Y1	421 aa	Predicted RBP	32.93	■■■□□ 2.86
NPLOC4-215	ENST00000574095	KLRK1	P26718	216 aa		32.93	■■■□□ 2.86
NPLOC4-215	ENST00000574095	CCDC57	Q2TAC2	916 aa		32.93	■■■□□ 2.86
NPLOC4-215	ENST00000574095	CDC37L1	Q7L3B6	337 aa		32.93	■■■□□ 2.86
NPLOC4-215	ENST00000574095	AGBL3	Q8NEM8	1001 aa		32.93	■■■□□ 2.86
NPLOC4-215	ENST00000574095	SUCLG2	Q96I99	432 aa		32.93	■■■□□ 2.86
NPLOC4-215	ENST00000574095	POLR2A	P24928	1970 aa	Known RBP	32.92	■■■□□ 2.86
NPLOC4-215	ENST00000574095	TAF5L	O75529	589 aa		32.92	■■■□□ 2.86
NPLOC4-215	ENST00000574095	KCNJ4	P48050	445 aa		32.92	■■■□□ 2.86

Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms