RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 PHF20L1A8MW92 1017 aa8.49□□□□□ -1.05
NUP88-208ENST00000574087 EREGO14944 169 aa8.49□□□□□ -1.05
NUP88-208ENST00000574087 CES1P23141 567 aa8.49□□□□□ -1.05
NUP88-208ENST00000574087 SIK1P57059 783 aa8.49□□□□□ -1.05
NUP88-208ENST00000574087 PLCB3Q01970 1234 aa8.49□□□□□ -1.05
NUP88-208ENST00000574087 MLLT1Q03111 559 aaPredicted RBP8.49□□□□□ -1.05
NUP88-208ENST00000574087 CHSY3Q70JA7 882 aa8.49□□□□□ -1.05
NUP88-208ENST00000574087 NSUN5Q96P11 429 aaKnown RBP8.49□□□□□ -1.05
NUP88-208ENST00000574087 NAGPAQ9UK23 515 aa8.49□□□□□ -1.05
NUP88-208ENST00000574087 ANKRD33BA6NCL7 494 aa8.48□□□□□ -1.05
NUP88-208ENST00000574087 HOXB4P17483 251 aaPredicted RBP8.48□□□□□ -1.05
NUP88-208ENST00000574087 FMR1Q06787 632 aaKnown RBP eCLIP8.48□□□□□ -1.05
NUP88-208ENST00000574087 HYAL2Q12891 473 aa8.48□□□□□ -1.05
NUP88-208ENST00000574087 HFE2Q6ZVN8 426 aa8.48□□□□□ -1.05
NUP88-208ENST00000574087 FAM35AQ86V20 835 aa8.48□□□□□ -1.05
NUP88-208ENST00000574087 DNAJC25Q9H1X3 360 aa8.48□□□□□ -1.05
NUP88-208ENST00000574087 ENAMQ9NRM1 1142 aa8.48□□□□□ -1.05
NUP88-208ENST00000574087 KANSL3Q9P2N6 904 aa8.48□□□□□ -1.05
NUP88-208ENST00000574087 J3QW42 95 aa8.47□□□□□ -1.05
NUP88-208ENST00000574087 EIF1AYO14602 144 aaKnown RBP8.47□□□□□ -1.05
NUP88-208ENST00000574087 KANK3Q6NY19 840 aa8.47□□□□□ -1.05
NUP88-208ENST00000574087 C20orf204Q6ZNR8 217 aa8.47□□□□□ -1.05
NUP88-208ENST00000574087 CSRNP1Q96S65 589 aa8.47□□□□□ -1.05
NUP88-208ENST00000574087 AMOTL2Q9Y2J4 779 aa8.47□□□□□ -1.05
NUP88-208ENST00000574087 CPNE3O75131 537 aaKnown RBP8.46□□□□□ -1.06
NUP88-208ENST00000574087 CPB1P15086 417 aa8.46□□□□□ -1.06
NUP88-208ENST00000574087 MFAP1P55081 439 aaKnown RBP8.46□□□□□ -1.06
NUP88-208ENST00000574087 PERM1Q5SV97 790 aa8.46□□□□□ -1.06
NUP88-208ENST00000574087 USPL1Q5W0Q7 1092 aa8.46□□□□□ -1.06
NUP88-208ENST00000574087 CEP120Q8N960 986 aa8.46□□□□□ -1.06
NUP88-208ENST00000574087 NEDD1Q8NHV4 660 aa8.46□□□□□ -1.06
NUP88-208ENST00000574087 LPIN3Q9BQK8 851 aa8.46□□□□□ -1.06
NUP88-208ENST00000574087 FRRS1LQ9P0K9 344 aa8.46□□□□□ -1.06
NUP88-208ENST00000574087 ALBP02768 609 aa8.45□□□□□ -1.06
NUP88-208ENST00000574087 ENOX2Q16206 610 aaKnown RBP8.45□□□□□ -1.06
NUP88-208ENST00000574087 NCAPG2Q86XI2 1143 aa8.45□□□□□ -1.06
NUP88-208ENST00000574087 NPAS4Q8IUM7 802 aa8.45□□□□□ -1.06
NUP88-208ENST00000574087 MICALL1Q8N3F8 863 aa8.45□□□□□ -1.06
NUP88-208ENST00000574087 GHRHP01286 108 aa8.44□□□□□ -1.06
NUP88-208ENST00000574087 POLR3DP05423 398 aaPredicted RBP8.44□□□□□ -1.06
NUP88-208ENST00000574087 ERCC3P19447 782 aa8.44□□□□□ -1.06
NUP88-208ENST00000574087 EIF2AK2P19525 551 aaKnown RBP8.44□□□□□ -1.06
NUP88-208ENST00000574087 AMPD1P23109 780 aa8.44□□□□□ -1.06
NUP88-208ENST00000574087 DGKGP49619 791 aa8.44□□□□□ -1.06
NUP88-208ENST00000574087 COL19A1Q14993 1142 aa8.44□□□□□ -1.06
NUP88-208ENST00000574087 PSAPL1Q6NUJ1 521 aa8.44□□□□□ -1.06
NUP88-208ENST00000574087 GALNT12Q8IXK2 581 aa8.44□□□□□ -1.06
NUP88-208ENST00000574087 TTC9Q92623 222 aa8.44□□□□□ -1.06
NUP88-208ENST00000574087 P4HBP07237 508 aaKnown RBP8.43□□□□□ -1.06
NUP88-208ENST00000574087 EDN3P14138 238 aa8.43□□□□□ -1.06
NUP88-208ENST00000574087 PEAR1Q5VY43 1037 aaPredicted RBP8.43□□□□□ -1.06
NUP88-208ENST00000574087 ELMSAN1Q6PJG2 1045 aa8.43□□□□□ -1.06
NUP88-208ENST00000574087 C8orf86Q6ZUL3 223 aa8.43□□□□□ -1.06
NUP88-208ENST00000574087 SPACA7Q96KW9 195 aa8.43□□□□□ -1.06
NUP88-208ENST00000574087 PRDM6Q9NQX0 595 aa8.43□□□□□ -1.06
NUP88-208ENST00000574087 ADAMTS8Q9UP79 889 aa8.43□□□□□ -1.06
NUP88-208ENST00000574087 PNMA6FA0A0J9YX94 578 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 M0R082 166 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 NFKBIEO00221 500 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 ACPPP15309 386 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 SNRPNP63162 240 aaKnown RBP8.42□□□□□ -1.06
NUP88-208ENST00000574087 COL9A3Q14050 684 aaPredicted RBP8.42□□□□□ -1.06
NUP88-208ENST00000574087 GRIK5Q16478 980 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 LINC00114Q6XXX2 140 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 ZNF417Q8TAU3 575 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 NUDT8Q8WV74 236 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 CCDC74AQ96AQ1 378 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 PLD4Q96BZ4 506 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 ZNF587Q96SQ5 575 aaPredicted RBP8.42□□□□□ -1.06
NUP88-208ENST00000574087 SMG9Q9H0W8 520 aaKnown RBP8.42□□□□□ -1.06
NUP88-208ENST00000574087 RBSNQ9H1K0 784 aa8.42□□□□□ -1.06
NUP88-208ENST00000574087 RGS9O75916 674 aaPredicted RBP8.41□□□□□ -1.06
NUP88-208ENST00000574087 MAPK8P45983 427 aa8.41□□□□□ -1.06
NUP88-208ENST00000574087 ATP11AP98196 1134 aa8.41□□□□□ -1.06
NUP88-208ENST00000574087 PBX4Q9BYU1 374 aa8.41□□□□□ -1.06
NUP88-208ENST00000574087 RASSF4Q9H2L5 321 aa8.41□□□□□ -1.06
NUP88-208ENST00000574087 JPH1Q9HDC5 661 aaPredicted RBP8.41□□□□□ -1.06
NUP88-208ENST00000574087 LATS2Q9NRM7 1088 aa8.41□□□□□ -1.06
NUP88-208ENST00000574087 DZANK1Q9NVP4 752 aa8.41□□□□□ -1.06
NUP88-208ENST00000574087 LILRB5O75023 590 aa8.4□□□□□ -1.06
NUP88-208ENST00000574087 AFF1P51825 1210 aaKnown RBP8.4□□□□□ -1.06
NUP88-208ENST00000574087 RRAGCQ9HB90 399 aa8.4□□□□□ -1.06
NUP88-208ENST00000574087 NPHS2Q9NP85 383 aa8.4□□□□□ -1.06
NUP88-208ENST00000574087 WWC3Q9ULE0 1092 aa8.4□□□□□ -1.06
NUP88-208ENST00000574087 KIAA0319Q5VV43 1072 aa8.39□□□□□ -1.07
NUP88-208ENST00000574087 ILDR2Q71H61 639 aa8.39□□□□□ -1.07
NUP88-208ENST00000574087 FBXO33Q7Z6M2 555 aa8.39□□□□□ -1.07
NUP88-208ENST00000574087 SETDB2Q96T68 719 aa8.39□□□□□ -1.07
NUP88-208ENST00000574087 OSMRQ99650 979 aa8.39□□□□□ -1.07
NUP88-208ENST00000574087 ZKSCAN3Q9BRR0 538 aa8.39□□□□□ -1.07
NUP88-208ENST00000574087 A0A1W2PP55 124 aa8.38□□□□□ -1.07
NUP88-208ENST00000574087 TRPA1O75762 1119 aa8.38□□□□□ -1.07
NUP88-208ENST00000574087 NID1P14543 1247 aa8.38□□□□□ -1.07
NUP88-208ENST00000574087 IRS1P35568 1242 aa8.38□□□□□ -1.07
NUP88-208ENST00000574087 EAPPQ56P03 285 aaPredicted RBP8.38□□□□□ -1.07
NUP88-208ENST00000574087 TMEM102Q8N9M5 508 aaPredicted RBP8.38□□□□□ -1.07
NUP88-208ENST00000574087 EPS8L3Q8TE67 593 aaKnown RBP8.38□□□□□ -1.07
NUP88-208ENST00000574087 HHIPQ96QV1 700 aa8.38□□□□□ -1.07
NUP88-208ENST00000574087 POP1Q99575 1024 aaKnown RBP8.38□□□□□ -1.07
NUP88-208ENST00000574087 CNTNAP5Q8WYK1 1306 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms