RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 LBX1P52954 281 aa12.12□□□□□ -0.47
SF3B3-211ENST00000568291 GRAPQ13588 217 aa12.12□□□□□ -0.47
SF3B3-211ENST00000568291 GCKRQ14397 625 aa12.12□□□□□ -0.47
SF3B3-211ENST00000568291 SF3B3Q15393 1217 aaKnown RBP12.12□□□□□ -0.47
SF3B3-211ENST00000568291 DPP8Q6V1X1 898 aaPredicted RBP12.12□□□□□ -0.47
SF3B3-211ENST00000568291 UBE3BQ7Z3V4 1068 aa12.12□□□□□ -0.47
SF3B3-211ENST00000568291 MRPL50Q8N5N7 158 aaKnown RBP12.12□□□□□ -0.47
SF3B3-211ENST00000568291 GRAPLQ8TC17 118 aaPredicted RBP12.12□□□□□ -0.47
SF3B3-211ENST00000568291 SSH1Q8WYL5 1049 aa12.12□□□□□ -0.47
SF3B3-211ENST00000568291 GPR101Q96P66 508 aaPredicted RBP12.12□□□□□ -0.47
SF3B3-211ENST00000568291 VPS33BQ9H267 617 aa12.12□□□□□ -0.47
SF3B3-211ENST00000568291 COL4A1P02462 1669 aa12.12□□□□□ -0.47
SF3B3-211ENST00000568291 POLR2AP24928 1970 aaKnown RBP12.11□□□□□ -0.47
SF3B3-211ENST00000568291 WTIPA6NIX2 430 aaPredicted RBP12.11□□□□□ -0.47
SF3B3-211ENST00000568291 BBOX1O75936 387 aa12.11□□□□□ -0.47
SF3B3-211ENST00000568291 GMPSP49915 693 aaPredicted RBP12.11□□□□□ -0.47
SF3B3-211ENST00000568291 MAP2K1Q02750 393 aaPredicted RBP12.11□□□□□ -0.47
SF3B3-211ENST00000568291 KIAA2012Q0VF49 1180 aa12.11□□□□□ -0.47
SF3B3-211ENST00000568291 GRM1Q13255 1194 aa12.11□□□□□ -0.47
SF3B3-211ENST00000568291 MPNDQ8N594 471 aa12.11□□□□□ -0.47
SF3B3-211ENST00000568291 CAPNS2Q96L46 248 aa12.11□□□□□ -0.47
SF3B3-211ENST00000568291 RTFDC1Q9BY42 306 aaPredicted RBP12.11□□□□□ -0.47
SF3B3-211ENST00000568291 ADARB2Q9NS39 739 aaKnown RBP12.11□□□□□ -0.47
SF3B3-211ENST00000568291 ZNRF3Q9ULT6 936 aa12.11□□□□□ -0.47
SF3B3-211ENST00000568291 CDHR2Q9BYE9 1310 aa12.11□□□□□ -0.47
SF3B3-211ENST00000568291 PSME4Q14997 1843 aa12.1□□□□□ -0.47
SF3B3-211ENST00000568291 H7C1W4 665 aa12.1□□□□□ -0.47
SF3B3-211ENST00000568291 PDE8AO60658 829 aa12.1□□□□□ -0.47
SF3B3-211ENST00000568291 ECE1P42892 770 aa12.1□□□□□ -0.47
SF3B3-211ENST00000568291 GPSM2P81274 684 aa12.1□□□□□ -0.47
SF3B3-211ENST00000568291 HNRNPUQ00839 825 aaKnown RBP eCLIP12.1□□□□□ -0.47
SF3B3-211ENST00000568291 CXCL9Q07325 125 aa12.1□□□□□ -0.47
SF3B3-211ENST00000568291 BEND3Q5T5X7 828 aa12.1□□□□□ -0.47
SF3B3-211ENST00000568291 CIAPIN1Q6FI81 312 aa12.1□□□□□ -0.47
SF3B3-211ENST00000568291 SP8Q8IXZ3 490 aa12.1□□□□□ -0.47
SF3B3-211ENST00000568291 TRMT2AQ8IZ69 625 aaKnown RBP12.1□□□□□ -0.47
SF3B3-211ENST00000568291 NSFL1CQ9UNZ2 370 aaKnown RBP12.1□□□□□ -0.47
SF3B3-211ENST00000568291 SCN9AQ15858 1988 aa12.1□□□□□ -0.47
SF3B3-211ENST00000568291 SPEF2Q9C093 1822 aa12.09□□□□□ -0.47
SF3B3-211ENST00000568291 RIMBP2O15034 1052 aa12.09□□□□□ -0.47
SF3B3-211ENST00000568291 RAD17O75943 681 aa12.09□□□□□ -0.47
SF3B3-211ENST00000568291 RPS8P62241 208 aaKnown RBP12.09□□□□□ -0.47
SF3B3-211ENST00000568291 CYP4F22Q6NT55 531 aa12.09□□□□□ -0.47
SF3B3-211ENST00000568291 LINS1Q8NG48 757 aa12.09□□□□□ -0.47
SF3B3-211ENST00000568291 TTLL11Q8NHH1 800 aa12.09□□□□□ -0.47
SF3B3-211ENST00000568291 GREM2Q9H772 168 aa12.09□□□□□ -0.47
SF3B3-211ENST00000568291 TLL2Q9Y6L7 1015 aa12.09□□□□□ -0.47
SF3B3-211ENST00000568291 MYH3P11055 1940 aa12.08□□□□□ -0.48
SF3B3-211ENST00000568291 CASP7P55210 303 aa12.08□□□□□ -0.48
SF3B3-211ENST00000568291 CTSWP56202 376 aa12.08□□□□□ -0.48
SF3B3-211ENST00000568291 TNIP1Q15025 636 aa12.08□□□□□ -0.48
SF3B3-211ENST00000568291 CCDC152Q4G0S7 254 aa12.08□□□□□ -0.48
SF3B3-211ENST00000568291 EPHA10Q5JZY3 1008 aa12.08□□□□□ -0.48
SF3B3-211ENST00000568291 CST9Q5W186 159 aa12.08□□□□□ -0.48
SF3B3-211ENST00000568291 TMC4Q7Z404 712 aa12.08□□□□□ -0.48
SF3B3-211ENST00000568291 TRPM4Q8TD43 1214 aa12.08□□□□□ -0.48
SF3B3-211ENST00000568291 GLIS2Q9BZE0 524 aaPredicted RBP12.08□□□□□ -0.48
SF3B3-211ENST00000568291 CASP8AP2Q9UKL3 1982 aa12.08□□□□□ -0.48
SF3B3-211ENST00000568291 YDJCA8MPS7 323 aa12.07□□□□□ -0.48
SF3B3-211ENST00000568291 C6orf229H3BNL8 230 aa12.07□□□□□ -0.48
SF3B3-211ENST00000568291 CELF2O95319 508 aaKnown RBP12.07□□□□□ -0.48
SF3B3-211ENST00000568291 BEGAINQ9BUH8 593 aa12.07□□□□□ -0.48
SF3B3-211ENST00000568291 SMC4Q9NTJ3 1288 aa12.07□□□□□ -0.48
SF3B3-211ENST00000568291 POLLQ9UGP5 575 aa12.07□□□□□ -0.48
SF3B3-211ENST00000568291 SHTN1A0MZ66 631 aa12.06□□□□□ -0.48
SF3B3-211ENST00000568291 ZBTB22O15209 634 aa12.06□□□□□ -0.48
SF3B3-211ENST00000568291 DOK7Q18PE1 504 aa12.06□□□□□ -0.48
SF3B3-211ENST00000568291 ZNF408Q9H9D4 720 aa12.06□□□□□ -0.48
SF3B3-211ENST00000568291 KCNQ5Q9NR82 932 aa12.06□□□□□ -0.48
SF3B3-211ENST00000568291 AOC2O75106 756 aa12.05□□□□□ -0.48
SF3B3-211ENST00000568291 FOXO4P98177 505 aa12.05□□□□□ -0.48
SF3B3-211ENST00000568291 FAM161AQ3B820 660 aa12.05□□□□□ -0.48
SF3B3-211ENST00000568291 SAPCD2Q86UD0 394 aa12.05□□□□□ -0.48
SF3B3-211ENST00000568291 ANKRD18AQ8IVF6 992 aa12.05□□□□□ -0.48
SF3B3-211ENST00000568291 MICALL2Q8IY33 904 aa12.05□□□□□ -0.48
SF3B3-211ENST00000568291 ABHD8Q96I13 439 aa12.05□□□□□ -0.48
SF3B3-211ENST00000568291 SRCIN1Q9C0H9 1055 aa12.05□□□□□ -0.48
SF3B3-211ENST00000568291 C9orf78Q9NZ63 289 aaPredicted RBP12.05□□□□□ -0.48
SF3B3-211ENST00000568291 ANKIB1Q9P2G1 1089 aa12.05□□□□□ -0.48
SF3B3-211ENST00000568291 NOB1Q9ULX3 412 aaKnown RBP12.05□□□□□ -0.48
SF3B3-211ENST00000568291 CHMP3Q9Y3E7 222 aa12.05□□□□□ -0.48
SF3B3-211ENST00000568291 AKAP11Q9UKA4 1901 aa12.04□□□□□ -0.48
SF3B3-211ENST00000568291 NBPF7P0C2Y1 421 aaPredicted RBP12.04□□□□□ -0.48
SF3B3-211ENST00000568291 ITGA6P23229 1130 aa12.04□□□□□ -0.48
SF3B3-211ENST00000568291 HIRAP54198 1017 aaPredicted RBP12.04□□□□□ -0.48
SF3B3-211ENST00000568291 WASHC4Q2M389 1173 aa12.04□□□□□ -0.48
SF3B3-211ENST00000568291 LMBR1LQ6UX01 489 aa12.04□□□□□ -0.48
SF3B3-211ENST00000568291 TBC1D16Q8TBP0 767 aa12.04□□□□□ -0.48
SF3B3-211ENST00000568291 ZC3H15Q8WU90 426 aaKnown RBP12.04□□□□□ -0.48
SF3B3-211ENST00000568291 ZNF594Q96JF6 807 aaPredicted RBP12.04□□□□□ -0.48
SF3B3-211ENST00000568291 DBNDD1Q9H9R9 158 aa12.04□□□□□ -0.48
SF3B3-211ENST00000568291 PGAP2Q9UHJ9 254 aa12.04□□□□□ -0.48
SF3B3-211ENST00000568291 CNOT7Q9UIV1 285 aaKnown RBP12.04□□□□□ -0.48
SF3B3-211ENST00000568291 TSKSQ9UJT2 592 aa12.04□□□□□ -0.48
SF3B3-211ENST00000568291 TNNQ9UQP3 1299 aa12.04□□□□□ -0.48
SF3B3-211ENST00000568291 H7C1D1 291 aa12.03□□□□□ -0.48
SF3B3-211ENST00000568291 SNAP23O00161 211 aa12.03□□□□□ -0.48
SF3B3-211ENST00000568291 GRM8O00222 908 aa12.03□□□□□ -0.48
SF3B3-211ENST00000568291 PSMD14O00487 310 aa12.03□□□□□ -0.48
SF3B3-211ENST00000568291 BCAR3O75815 825 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms