RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 SCN4AP35499 1836 aa23.7■■□□□ 1.38
CLN3-227ENST00000567495 ITGA6P23229 1130 aa23.69■■□□□ 1.38
CLN3-227ENST00000567495 ATP2B4P23634 1241 aa23.69■■□□□ 1.38
CLN3-227ENST00000567495 DUOX1Q9NRD9 1551 aa23.69■■□□□ 1.38
CLN3-227ENST00000567495 RIMBP2O15034 1052 aa23.68■■□□□ 1.38
CLN3-227ENST00000567495 RAD17O75943 681 aa23.68■■□□□ 1.38
CLN3-227ENST00000567495 POTEIP0CG38 1075 aa23.68■■□□□ 1.38
CLN3-227ENST00000567495 POTEJP0CG39 1038 aa23.68■■□□□ 1.38
CLN3-227ENST00000567495 GPRC5DQ9NZD1 345 aa23.68■■□□□ 1.38
CLN3-227ENST00000567495 MINPP1Q9UNW1 487 aa23.68■■□□□ 1.38
CLN3-227ENST00000567495 G3V3G9 751 aa23.67■■□□□ 1.38
CLN3-227ENST00000567495 FAM161AQ3B820 660 aa23.67■■□□□ 1.38
CLN3-227ENST00000567495 DCAF8Q5TAQ9 597 aa23.67■■□□□ 1.38
CLN3-227ENST00000567495 USP50Q70EL3 339 aaPredicted RBP23.67■■□□□ 1.38
CLN3-227ENST00000567495 MPHOSPH8Q99549 860 aa23.67■■□□□ 1.38
CLN3-227ENST00000567495 CLEC11AQ9Y240 323 aa23.67■■□□□ 1.38
CLN3-227ENST00000567495 TAF1P21675 1872 aa23.66■■□□□ 1.38
CLN3-227ENST00000567495 ANKRD18BA2A2Z9 1011 aa23.66■■□□□ 1.38
CLN3-227ENST00000567495 YDJCA8MPS7 323 aa23.66■■□□□ 1.38
CLN3-227ENST00000567495 EPS15P42566 896 aa23.66■■□□□ 1.38
CLN3-227ENST00000567495 GMPSP49915 693 aaPredicted RBP23.66■■□□□ 1.38
CLN3-227ENST00000567495 BCL2L13Q9BXK5 485 aa23.66■■□□□ 1.38
CLN3-227ENST00000567495 DBNDD1Q9H9R9 158 aa23.66■■□□□ 1.38
CLN3-227ENST00000567495 SMC4Q9NTJ3 1288 aa23.66■■□□□ 1.38
CLN3-227ENST00000567495 COL4A1P02462 1669 aa23.65■■□□□ 1.38
CLN3-227ENST00000567495 ECE2O60344 883 aa23.65■■□□□ 1.38
CLN3-227ENST00000567495 FOXO4P98177 505 aa23.65■■□□□ 1.38
CLN3-227ENST00000567495 IFIT5Q13325 482 aaKnown RBP23.65■■□□□ 1.38
CLN3-227ENST00000567495 DNAJC5GQ8N7S2 189 aa23.65■■□□□ 1.38
CLN3-227ENST00000567495 ANKRD2Q9GZV1 360 aa23.65■■□□□ 1.38
CLN3-227ENST00000567495 ADARB2Q9NS39 739 aaKnown RBP23.65■■□□□ 1.38
CLN3-227ENST00000567495 DOK7Q18PE1 504 aa23.64■■□□□ 1.37
CLN3-227ENST00000567495 DPF2Q92785 391 aa23.64■■□□□ 1.37
CLN3-227ENST00000567495 LEMD3Q9Y2U8 911 aa23.64■■□□□ 1.37
CLN3-227ENST00000567495 RPS12P25398 132 aaKnown RBP23.63■■□□□ 1.37
CLN3-227ENST00000567495 BRPF1P55201 1214 aaPredicted RBP23.63■■□□□ 1.37
CLN3-227ENST00000567495 UTYO14607 1347 aa23.62■■□□□ 1.37
CLN3-227ENST00000567495 LMBR1LQ6UX01 489 aa23.62■■□□□ 1.37
CLN3-227ENST00000567495 CNTROBQ8N137 903 aa23.62■■□□□ 1.37
CLN3-227ENST00000567495 CHMP3Q9Y3E7 222 aa23.62■■□□□ 1.37
CLN3-227ENST00000567495 H7C1D1 291 aa23.61■■□□□ 1.37
CLN3-227ENST00000567495 PSMD14O00487 310 aa23.61■■□□□ 1.37
CLN3-227ENST00000567495 ITGBL1O95965 494 aaPredicted RBP23.61■■□□□ 1.37
CLN3-227ENST00000567495 CCT4P50991 539 aaKnown RBP23.61■■□□□ 1.37
CLN3-227ENST00000567495 CCDC57Q2TAC2 916 aa23.61■■□□□ 1.37
CLN3-227ENST00000567495 PODNQ7Z5L7 613 aa23.61■■□□□ 1.37
CLN3-227ENST00000567495 GPR101Q96P66 508 aaPredicted RBP23.61■■□□□ 1.37
CLN3-227ENST00000567495 PASKQ96RG2 1323 aa23.6■■□□□ 1.37
CLN3-227ENST00000567495 LTBP1Q14766 1721 aa23.6■■□□□ 1.37
CLN3-227ENST00000567495 KLRG1Q96E93 195 aa23.6■■□□□ 1.37
CLN3-227ENST00000567495 CREBZFQ9NS37 354 aa23.6■■□□□ 1.37
CLN3-227ENST00000567495 CNOT7Q9UIV1 285 aaKnown RBP23.6■■□□□ 1.37
CLN3-227ENST00000567495 MED23Q9ULK4 1368 aa23.6■■□□□ 1.37
CLN3-227ENST00000567495 VIL1P09327 827 aaKnown RBP23.59■■□□□ 1.37
CLN3-227ENST00000567495 EPHA10Q5JZY3 1008 aa23.59■■□□□ 1.37
CLN3-227ENST00000567495 ZC3H15Q8WU90 426 aaKnown RBP23.59■■□□□ 1.37
CLN3-227ENST00000567495 NBPF7P0C2Y1 421 aaPredicted RBP23.58■■□□□ 1.37
CLN3-227ENST00000567495 HTRA3P83110 453 aa23.58■■□□□ 1.37
CLN3-227ENST00000567495 TAF7LQ5H9L4 462 aa23.58■■□□□ 1.37
CLN3-227ENST00000567495 MAP1SQ66K74 1059 aaPredicted RBP23.58■■□□□ 1.37
CLN3-227ENST00000567495 API5Q9BZZ5 524 aaKnown RBP23.58■■□□□ 1.37
CLN3-227ENST00000567495 ZNF804BA4D1E1 1349 aa23.58■■□□□ 1.36
CLN3-227ENST00000567495 MYH3P11055 1940 aa23.57■■□□□ 1.36
CLN3-227ENST00000567495 KCNJ4P48050 445 aa23.57■■□□□ 1.36
CLN3-227ENST00000567495 CHRNDQ07001 517 aa23.57■■□□□ 1.36
CLN3-227ENST00000567495 RARSP54136 660 aaKnown RBP23.56■■□□□ 1.36
CLN3-227ENST00000567495 HNRNPUQ00839 825 aaKnown RBP eCLIP23.56■■□□□ 1.36
CLN3-227ENST00000567495 MICALL2Q8IY33 904 aa23.56■■□□□ 1.36
CLN3-227ENST00000567495 SUCLG2Q96I99 432 aa23.56■■□□□ 1.36
CLN3-227ENST00000567495 COA1Q9GZY4 146 aa23.56■■□□□ 1.36
CLN3-227ENST00000567495 KCNQ5Q9NR82 932 aa23.56■■□□□ 1.36
CLN3-227ENST00000567495 ZBTB12Q9Y330 459 aaPredicted RBP23.56■■□□□ 1.36
CLN3-227ENST00000567495 LDHAL6AQ6ZMR3 332 aa23.55■■□□□ 1.36
CLN3-227ENST00000567495 AGBL3Q8NEM8 1001 aa23.55■■□□□ 1.36
CLN3-227ENST00000567495 USP44Q9H0E7 712 aa23.55■■□□□ 1.36
CLN3-227ENST00000567495 PGAP2Q9UHJ9 254 aa23.55■■□□□ 1.36
CLN3-227ENST00000567495 NOB1Q9ULX3 412 aaKnown RBP23.55■■□□□ 1.36
CLN3-227ENST00000567495 KIF16BQ96L93 1317 aa23.55■■□□□ 1.36
CLN3-227ENST00000567495 USP17L3A6NCW0 530 aa23.54■■□□□ 1.36
CLN3-227ENST00000567495 USP17L4A6NCW7 530 aa23.54■■□□□ 1.36
CLN3-227ENST00000567495 TMEM88BA6NKF7 163 aa23.54■■□□□ 1.36
CLN3-227ENST00000567495 RABL6Q3YEC7 729 aaPredicted RBP23.54■■□□□ 1.36
CLN3-227ENST00000567495 USP17L1Q7RTZ2 530 aa23.54■■□□□ 1.36
CLN3-227ENST00000567495 ARHGAP45Q92619 1136 aa23.54■■□□□ 1.36
CLN3-227ENST00000567495 KAZALD1Q96I82 304 aa23.54■■□□□ 1.36
CLN3-227ENST00000567495 ADAMTSL1Q8N6G6 1762 aa23.54■■□□□ 1.36
CLN3-227ENST00000567495 ZNF609O15014 1411 aa23.53■■□□□ 1.36
CLN3-227ENST00000567495 RSBN1LQ6PCB5 846 aaPredicted RBP23.53■■□□□ 1.36
CLN3-227ENST00000567495 CNNM1Q9NRU3 951 aa23.53■■□□□ 1.36
CLN3-227ENST00000567495 HDAC5Q9UQL6 1122 aa23.53■■□□□ 1.36
CLN3-227ENST00000567495 WTIPA6NIX2 430 aaPredicted RBP23.52■■□□□ 1.36
CLN3-227ENST00000567495 C15orf52Q6ZUT6 534 aaKnown RBP23.52■■□□□ 1.36
CLN3-227ENST00000567495 JMYQ8N9B5 988 aa23.52■■□□□ 1.36
CLN3-227ENST00000567495 BICC1Q9H694 974 aaKnown RBP23.52■■□□□ 1.36
CLN3-227ENST00000567495 IPO8O15397 1037 aaKnown RBP23.51■■□□□ 1.35
CLN3-227ENST00000567495 TRPM4Q8TD43 1214 aa23.51■■□□□ 1.35
CLN3-227ENST00000567495 MMP14P50281 582 aa23.5■■□□□ 1.35
CLN3-227ENST00000567495 HIRAP54198 1017 aaPredicted RBP23.5■■□□□ 1.35
CLN3-227ENST00000567495 STRIP1Q5VSL9 837 aa23.5■■□□□ 1.35
CLN3-227ENST00000567495 ZNF594Q96JF6 807 aaPredicted RBP23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms