RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 LRRC37AA6NMS7 1700 aa14.66□□□□□ -0.06
CLN3-226ENST00000567160 DUOX1Q9NRD9 1551 aa14.66□□□□□ -0.06
CLN3-226ENST00000567160 FXR1P51114 621 aaKnown RBP eCLIP14.66□□□□□ -0.06
CLN3-226ENST00000567160 DCTN1Q14203 1278 aa14.66□□□□□ -0.06
CLN3-226ENST00000567160 DBNDD1Q9H9R9 158 aa14.66□□□□□ -0.06
CLN3-226ENST00000567160 ERBB4Q15303 1308 aa14.66□□□□□ -0.06
CLN3-226ENST00000567160 KDM3BQ7LBC6 1761 aa14.65□□□□□ -0.06
CLN3-226ENST00000567160 FKTNO75072 461 aa14.65□□□□□ -0.06
CLN3-226ENST00000567160 EYA3Q99504 573 aa14.65□□□□□ -0.06
CLN3-226ENST00000567160 MKI67P46013 3256 aaKnown RBP14.64□□□□□ -0.07
CLN3-226ENST00000567160 ECE2O60344 883 aa14.64□□□□□ -0.07
CLN3-226ENST00000567160 TM4SF4P48230 202 aa14.64□□□□□ -0.07
CLN3-226ENST00000567160 SREBF2Q12772 1141 aa14.64□□□□□ -0.07
CLN3-226ENST00000567160 THUMPD2Q9BTF0 503 aaKnown RBP14.64□□□□□ -0.07
CLN3-226ENST00000567160 MIS18AQ9NYP9 233 aa14.64□□□□□ -0.07
CLN3-226ENST00000567160 TRIM35Q9UPQ4 493 aa14.64□□□□□ -0.07
CLN3-226ENST00000567160 TAF1P21675 1872 aa14.63□□□□□ -0.07
CLN3-226ENST00000567160 RBBP6Q7Z6E9 1792 aaKnown RBP14.63□□□□□ -0.07
CLN3-226ENST00000567160 C6orf229H3BNL8 230 aa14.63□□□□□ -0.07
CLN3-226ENST00000567160 RIMBP2O15034 1052 aa14.63□□□□□ -0.07
CLN3-226ENST00000567160 HCLS1P14317 486 aaPredicted RBP14.63□□□□□ -0.07
CLN3-226ENST00000567160 LMOD3Q0VAK6 560 aa14.63□□□□□ -0.07
CLN3-226ENST00000567160 HSP90AB3PQ58FF7 597 aa14.63□□□□□ -0.07
CLN3-226ENST00000567160 ANGEL2Q5VTE6 544 aaKnown RBP14.63□□□□□ -0.07
CLN3-226ENST00000567160 NSFL1CQ9UNZ2 370 aaKnown RBP14.63□□□□□ -0.07
CLN3-226ENST00000567160 CFHR5Q9BXR6 569 aa14.62□□□□□ -0.07
CLN3-226ENST00000567160 KIAA0100Q14667 2235 aaKnown RBP14.62□□□□□ -0.07
CLN3-226ENST00000567160 SH3TC1Q8TE82 1336 aa14.62□□□□□ -0.07
CLN3-226ENST00000567160 PITPNM2Q9BZ72 1349 aa14.62□□□□□ -0.07
CLN3-226ENST00000567160 RTL9Q8NET4 1388 aa14.61□□□□□ -0.07
CLN3-226ENST00000567160 G3V3G9 751 aa14.61□□□□□ -0.07
CLN3-226ENST00000567160 VIL1P09327 827 aaKnown RBP14.61□□□□□ -0.07
CLN3-226ENST00000567160 EIF4A1P60842 406 aaKnown RBP14.61□□□□□ -0.07
CLN3-226ENST00000567160 SCARF1Q14162 830 aa14.61□□□□□ -0.07
CLN3-226ENST00000567160 DCAF8Q5TAQ9 597 aa14.61□□□□□ -0.07
CLN3-226ENST00000567160 NECTIN2Q92692 538 aa14.61□□□□□ -0.07
CLN3-226ENST00000567160 TRMT112Q9UI30 125 aaKnown RBP14.61□□□□□ -0.07
CLN3-226ENST00000567160 ALDH1A1P00352 501 aa14.6□□□□□ -0.07
CLN3-226ENST00000567160 NF2P35240 595 aa14.6□□□□□ -0.07
CLN3-226ENST00000567160 TTLL12Q14166 644 aaPredicted RBP14.6□□□□□ -0.07
CLN3-226ENST00000567160 DOK7Q18PE1 504 aa14.6□□□□□ -0.07
CLN3-226ENST00000567160 CCDC27Q2M243 656 aa14.6□□□□□ -0.07
CLN3-226ENST00000567160 WWC1Q8IX03 1113 aa14.6□□□□□ -0.07
CLN3-226ENST00000567160 ASTN2O75129 1339 aaPredicted RBP14.6□□□□□ -0.07
CLN3-226ENST00000567160 POTEFA5A3E0 1075 aa14.59□□□□□ -0.07
CLN3-226ENST00000567160 UBE2Q2LH0YL09 131 aa14.59□□□□□ -0.07
CLN3-226ENST00000567160 ZNF280AP59817 542 aaPredicted RBP14.59□□□□□ -0.07
CLN3-226ENST00000567160 TCIRG1Q13488 830 aa14.59□□□□□ -0.07
CLN3-226ENST00000567160 NLRP10Q86W26 655 aa14.59□□□□□ -0.07
CLN3-226ENST00000567160 AGBL3Q8NEM8 1001 aa14.59□□□□□ -0.07
CLN3-226ENST00000567160 ZC3H12CQ9C0D7 883 aaKnown RBP14.59□□□□□ -0.07
CLN3-226ENST00000567160 KCNQ5Q9NR82 932 aa14.59□□□□□ -0.07
CLN3-226ENST00000567160 POLLQ9UGP5 575 aa14.59□□□□□ -0.07
CLN3-226ENST00000567160 TRIM17Q9Y577 477 aa14.59□□□□□ -0.07
CLN3-226ENST00000567160 ZNF609O15014 1411 aa14.58□□□□□ -0.07
CLN3-226ENST00000567160 SCN9AQ15858 1988 aa14.58□□□□□ -0.07
CLN3-226ENST00000567160 NCBP3Q53F19 620 aaKnown RBP14.58□□□□□ -0.08
CLN3-226ENST00000567160 MOB2Q70IA6 237 aa14.58□□□□□ -0.08
CLN3-226ENST00000567160 LAS1LQ9Y4W2 734 aaKnown RBP14.58□□□□□ -0.08
CLN3-226ENST00000567160 ZBED9Q6R2W3 1325 aa14.58□□□□□ -0.08
CLN3-226ENST00000567160 GPSM2P81274 684 aa14.57□□□□□ -0.08
CLN3-226ENST00000567160 RSBN1LQ6PCB5 846 aaPredicted RBP14.57□□□□□ -0.08
CLN3-226ENST00000567160 MYOZ2Q9NPC6 264 aa14.57□□□□□ -0.08
CLN3-226ENST00000567160 ZNF521Q96K83 1311 aa14.57□□□□□ -0.08
CLN3-226ENST00000567160 PSME4Q14997 1843 aa14.57□□□□□ -0.08
CLN3-226ENST00000567160 USP17L8P0C7I0 530 aa14.56□□□□□ -0.08
CLN3-226ENST00000567160 MKRN3Q13064 507 aaKnown RBP14.56□□□□□ -0.08
CLN3-226ENST00000567160 OTOP1Q7RTM1 612 aa14.56□□□□□ -0.08
CLN3-226ENST00000567160 TBC1D16Q8TBP0 767 aa14.56□□□□□ -0.08
CLN3-226ENST00000567160 COLQQ9Y215 455 aaPredicted RBP14.56□□□□□ -0.08
CLN3-226ENST00000567160 TRIOBPQ9H2D6 2365 aa14.55□□□□□ -0.08
CLN3-226ENST00000567160 HTTP42858 3142 aa14.55□□□□□ -0.08
CLN3-226ENST00000567160 DLL1O00548 723 aa14.55□□□□□ -0.08
CLN3-226ENST00000567160 INHBEP58166 350 aa14.55□□□□□ -0.08
CLN3-226ENST00000567160 CALD1Q05682 793 aaKnown RBP14.55□□□□□ -0.08
CLN3-226ENST00000567160 ARMC9Q7Z3E5 817 aa14.55□□□□□ -0.08
CLN3-226ENST00000567160 LRP10Q7Z4F1 713 aa14.55□□□□□ -0.08
CLN3-226ENST00000567160 WDR63Q8IWG1 891 aa14.55□□□□□ -0.08
CLN3-226ENST00000567160 CELF1Q92879 486 aaKnown RBP14.55□□□□□ -0.08
CLN3-226ENST00000567160 CENPFP49454 3210 aa14.55□□□□□ -0.08
CLN3-226ENST00000567160 CEP290O15078 2479 aa14.54□□□□□ -0.08
CLN3-226ENST00000567160 EIF2S2P20042 333 aaKnown RBP14.54□□□□□ -0.08
CLN3-226ENST00000567160 GOLGA2Q08379 1002 aa14.54□□□□□ -0.08
CLN3-226ENST00000567160 CDCA7LQ96GN5 454 aa14.54□□□□□ -0.08
CLN3-226ENST00000567160 ERO1AQ96HE7 468 aa14.54□□□□□ -0.08
CLN3-226ENST00000567160 TMEM106CQ9BVX2 250 aa14.54□□□□□ -0.08
CLN3-226ENST00000567160 MANSC4A6NHS7 340 aaPredicted RBP14.53□□□□□ -0.08
CLN3-226ENST00000567160 EN2P19622 333 aaPredicted RBP14.53□□□□□ -0.08
CLN3-226ENST00000567160 PDIA6Q15084 440 aa14.53□□□□□ -0.08
CLN3-226ENST00000567160 SF3B3Q15393 1217 aaKnown RBP14.53□□□□□ -0.08
CLN3-226ENST00000567160 ARMC5Q96C12 935 aa14.53□□□□□ -0.08
CLN3-226ENST00000567160 R3HDMLQ9H3Y0 253 aa14.53□□□□□ -0.08
CLN3-226ENST00000567160 SPINK5Q9NQ38 1064 aaPredicted RBP14.53□□□□□ -0.08
CLN3-226ENST00000567160 PODXL2Q9NZ53 605 aa14.53□□□□□ -0.08
CLN3-226ENST00000567160 IL16Q14005 1332 aa14.52□□□□□ -0.08
CLN3-226ENST00000567160 UFL1O94874 794 aa14.52□□□□□ -0.09
CLN3-226ENST00000567160 GNAI1P63096 354 aa14.52□□□□□ -0.09
CLN3-226ENST00000567160 AIMP1Q12904 312 aaKnown RBP14.52□□□□□ -0.09
CLN3-226ENST00000567160 COPS6Q7L5N1 327 aa14.52□□□□□ -0.09
CLN3-226ENST00000567160 TSR2Q969E8 191 aaKnown RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms