RNA–Protein interactions for RNA: ENST00000566292.5

USB1-213, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-213ENST00000566292 ECE2O60344 883 aa23.49■■□□□ 1.35
USB1-213ENST00000566292 HIRAP54198 1017 aaPredicted RBP23.49■■□□□ 1.35
USB1-213ENST00000566292 CTSWP56202 376 aa23.49■■□□□ 1.35
USB1-213ENST00000566292 FLIIQ13045 1269 aa23.49■■□□□ 1.35
USB1-213ENST00000566292 DOK7Q18PE1 504 aa23.49■■□□□ 1.35
USB1-213ENST00000566292 TRPM4Q8TD43 1214 aa23.49■■□□□ 1.35
USB1-213ENST00000566292 KCNQ5Q9NR82 932 aa23.49■■□□□ 1.35
USB1-213ENST00000566292 CNOT7Q9UIV1 285 aaKnown RBP23.49■■□□□ 1.35
USB1-213ENST00000566292 PSME4Q14997 1843 aa23.49■■□□□ 1.35
USB1-213ENST00000566292 VAMP4O75379 141 aa23.48■■□□□ 1.35
USB1-213ENST00000566292 SPINK5Q9NQ38 1064 aaPredicted RBP23.48■■□□□ 1.35
USB1-213ENST00000566292 ANKIB1Q9P2G1 1089 aa23.48■■□□□ 1.35
USB1-213ENST00000566292 PGAP2Q9UHJ9 254 aa23.48■■□□□ 1.35
USB1-213ENST00000566292 RTL9Q8NET4 1388 aa23.48■■□□□ 1.35
USB1-213ENST00000566292 UFL1O94874 794 aa23.47■■□□□ 1.35
USB1-213ENST00000566292 EXOSC9Q06265 439 aaKnown RBP23.47■■□□□ 1.35
USB1-213ENST00000566292 DEFB115Q30KQ5 88 aa23.47■■□□□ 1.35
USB1-213ENST00000566292 CST9Q5W186 159 aa23.47■■□□□ 1.35
USB1-213ENST00000566292 ANKRD18AQ8IVF6 992 aa23.47■■□□□ 1.35
USB1-213ENST00000566292 MICALL2Q8IY33 904 aa23.47■■□□□ 1.35
USB1-213ENST00000566292 TTLL11Q8NHH1 800 aa23.47■■□□□ 1.35
USB1-213ENST00000566292 GGA1Q9UJY5 639 aa23.47■■□□□ 1.35
USB1-213ENST00000566292 ABT1Q9ULW3 272 aaKnown RBP23.47■■□□□ 1.35
USB1-213ENST00000566292 POLR2AP24928 1970 aaKnown RBP23.47■■□□□ 1.35
USB1-213ENST00000566292 H7C1W4 665 aa23.46■■□□□ 1.35
USB1-213ENST00000566292 FAM9BQ8IZU0 186 aa23.46■■□□□ 1.35
USB1-213ENST00000566292 DPF2Q92785 391 aa23.46■■□□□ 1.35
USB1-213ENST00000566292 FKBP5Q13451 457 aaPredicted RBP23.45■■□□□ 1.34
USB1-213ENST00000566292 UBE3BQ7Z3V4 1068 aa23.45■■□□□ 1.34
USB1-213ENST00000566292 GLIS2Q9BZE0 524 aaPredicted RBP23.45■■□□□ 1.34
USB1-213ENST00000566292 ZC3H12CQ9C0D7 883 aaKnown RBP23.45■■□□□ 1.34
USB1-213ENST00000566292 GREM2Q9H772 168 aa23.45■■□□□ 1.34
USB1-213ENST00000566292 XDHP47989 1333 aa23.44■■□□□ 1.34
USB1-213ENST00000566292 H7C1D1 291 aa23.44■■□□□ 1.34
USB1-213ENST00000566292 GCKRQ14397 625 aa23.44■■□□□ 1.34
USB1-213ENST00000566292 ZC3H15Q8WU90 426 aaKnown RBP23.44■■□□□ 1.34
USB1-213ENST00000566292 DNAAF4Q8WXU2 420 aa23.44■■□□□ 1.34
USB1-213ENST00000566292 CDC5LQ99459 802 aaKnown RBP23.44■■□□□ 1.34
USB1-213ENST00000566292 SAMD7Q7Z3H4 446 aa23.43■■□□□ 1.34
USB1-213ENST00000566292 THSD7BQ9C0I4 1608 aa23.43■■□□□ 1.34
USB1-213ENST00000566292 WDR33Q9C0J8 1336 aaKnown RBP23.42■■□□□ 1.34
USB1-213ENST00000566292 FOXN1O15353 648 aa23.42■■□□□ 1.34
USB1-213ENST00000566292 RPS12P25398 132 aaKnown RBP23.42■■□□□ 1.34
USB1-213ENST00000566292 CASP7P55210 303 aa23.42■■□□□ 1.34
USB1-213ENST00000566292 WTIPA6NIX2 430 aaPredicted RBP23.41■■□□□ 1.34
USB1-213ENST00000566292 EGFRP00533 1210 aa23.41■■□□□ 1.34
USB1-213ENST00000566292 VIL1P09327 827 aaKnown RBP23.41■■□□□ 1.34
USB1-213ENST00000566292 PLA2G12BQ9BX93 195 aa23.41■■□□□ 1.34
USB1-213ENST00000566292 BSDC1Q9NW68 430 aaPredicted RBP23.41■■□□□ 1.34
USB1-213ENST00000566292 ZNF646O15015 1829 aaPredicted RBP23.4■■□□□ 1.34
USB1-213ENST00000566292 TBC1D10BQ4KMP7 808 aaPredicted RBP23.4■■□□□ 1.34
USB1-213ENST00000566292 LINS1Q8NG48 757 aa23.4■■□□□ 1.34
USB1-213ENST00000566292 MINPP1Q9UNW1 487 aa23.4■■□□□ 1.34
USB1-213ENST00000566292 TLL2Q9Y6L7 1015 aa23.4■■□□□ 1.34
USB1-213ENST00000566292 G3V3G9 751 aa23.39■■□□□ 1.33
USB1-213ENST00000566292 CELF2O95319 508 aaKnown RBP23.39■■□□□ 1.33
USB1-213ENST00000566292 ATP2B4P23634 1241 aa23.39■■□□□ 1.33
USB1-213ENST00000566292 DCAF8Q5TAQ9 597 aa23.39■■□□□ 1.33
USB1-213ENST00000566292 TNS4Q8IZW8 715 aa23.39■■□□□ 1.33
USB1-213ENST00000566292 MYH16Q9H6N6 1097 aa23.39■■□□□ 1.33
USB1-213ENST00000566292 WBP1LQ9NX94 342 aa23.39■■□□□ 1.33
USB1-213ENST00000566292 F6X3S4 739 aa23.38■■□□□ 1.33
USB1-213ENST00000566292 CDC37L1Q7L3B6 337 aa23.38■■□□□ 1.33
USB1-213ENST00000566292 ZNF609O15014 1411 aa23.37■■□□□ 1.33
USB1-213ENST00000566292 CYP4F22Q6NT55 531 aa23.37■■□□□ 1.33
USB1-213ENST00000566292 CAPNS2Q96L46 248 aa23.37■■□□□ 1.33
USB1-213ENST00000566292 CSF1RP07333 972 aa23.36■■□□□ 1.33
USB1-213ENST00000566292 ITGA6P23229 1130 aa23.36■■□□□ 1.33
USB1-213ENST00000566292 FAM161AQ3B820 660 aa23.36■■□□□ 1.33
USB1-213ENST00000566292 RBM26Q5T8P6 1007 aaKnown RBP23.36■■□□□ 1.33
USB1-213ENST00000566292 DLK2Q6UY11 383 aa23.36■■□□□ 1.33
USB1-213ENST00000566292 PAXIP1Q6ZW49 1069 aaPredicted RBP23.36■■□□□ 1.33
USB1-213ENST00000566292 SAPCD2Q86UD0 394 aa23.36■■□□□ 1.33
USB1-213ENST00000566292 USP48Q86UV5 1035 aa23.36■■□□□ 1.33
USB1-213ENST00000566292 AIDAQ96BJ3 306 aa23.36■■□□□ 1.33
USB1-213ENST00000566292 A0A1B0GUL6 1792 aa23.36■■□□□ 1.33
USB1-213ENST00000566292 MED23Q9ULK4 1368 aa23.36■■□□□ 1.33
USB1-213ENST00000566292 ZNF521Q96K83 1311 aa23.35■■□□□ 1.33
USB1-213ENST00000566292 CCT4P50991 539 aaKnown RBP23.35■■□□□ 1.33
USB1-213ENST00000566292 BEND3Q5T5X7 828 aa23.35■■□□□ 1.33
USB1-213ENST00000566292 RSBN1LQ6PCB5 846 aaPredicted RBP23.35■■□□□ 1.33
USB1-213ENST00000566292 ZNF408Q9H9D4 720 aa23.35■■□□□ 1.33
USB1-213ENST00000566292 IGHMBP2P38935 993 aaKnown RBP23.34■■□□□ 1.33
USB1-213ENST00000566292 ECE1P42892 770 aa23.34■■□□□ 1.33
USB1-213ENST00000566292 GRM1Q13255 1194 aa23.34■■□□□ 1.33
USB1-213ENST00000566292 KIF4BQ2VIQ3 1234 aa23.34■■□□□ 1.33
USB1-213ENST00000566292 CTCFP49711 727 aaPredicted RBP23.33■■□□□ 1.33
USB1-213ENST00000566292 PODNQ7Z5L7 613 aa23.33■■□□□ 1.33
USB1-213ENST00000566292 AGBL3Q8NEM8 1001 aa23.33■■□□□ 1.33
USB1-213ENST00000566292 GMLQ99445 158 aa23.33■■□□□ 1.33
USB1-213ENST00000566292 ZNF280AP59817 542 aaPredicted RBP23.32■■□□□ 1.32
USB1-213ENST00000566292 MAP2K1Q02750 393 aaPredicted RBP23.32■■□□□ 1.32
USB1-213ENST00000566292 KRT26Q7Z3Y9 468 aa23.32■■□□□ 1.32
USB1-213ENST00000566292 USP17L3A6NCW0 530 aa23.31■■□□□ 1.32
USB1-213ENST00000566292 USP17L4A6NCW7 530 aa23.31■■□□□ 1.32
USB1-213ENST00000566292 ADM5C9JUS6 153 aa23.31■■□□□ 1.32
USB1-213ENST00000566292 FOXO4P98177 505 aa23.31■■□□□ 1.32
USB1-213ENST00000566292 USP17L1Q7RTZ2 530 aa23.31■■□□□ 1.32
USB1-213ENST00000566292 TXNRD3Q86VQ6 643 aa23.31■■□□□ 1.32
USB1-213ENST00000566292 PRDM10Q9NQV6 1147 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms