RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TMEM88BA6NKF7 163 aa13.85□□□□□ -0.19
VPS39-208ENST00000564994 CASP7P55210 303 aa13.85□□□□□ -0.19
VPS39-208ENST00000564994 GCKRQ14397 625 aa13.85□□□□□ -0.19
VPS39-208ENST00000564994 DOK7Q18PE1 504 aa13.85□□□□□ -0.19
VPS39-208ENST00000564994 UBE3BQ7Z3V4 1068 aa13.85□□□□□ -0.19
VPS39-208ENST00000564994 ANKRD18AQ8IVF6 992 aa13.85□□□□□ -0.19
VPS39-208ENST00000564994 DNAAF4Q8WXU2 420 aa13.85□□□□□ -0.19
VPS39-208ENST00000564994 GREM2Q9H772 168 aa13.85□□□□□ -0.19
VPS39-208ENST00000564994 ZBTB12Q9Y330 459 aaPredicted RBP13.85□□□□□ -0.19
VPS39-208ENST00000564994 CNTNAP1P78357 1384 aa13.84□□□□□ -0.19
VPS39-208ENST00000564994 RTL9Q8NET4 1388 aa13.84□□□□□ -0.19
VPS39-208ENST00000564994 WTIPA6NIX2 430 aaPredicted RBP13.84□□□□□ -0.19
VPS39-208ENST00000564994 PSMD14O00487 310 aa13.84□□□□□ -0.19
VPS39-208ENST00000564994 ECE2O60344 883 aa13.84□□□□□ -0.19
VPS39-208ENST00000564994 UFL1O94874 794 aa13.84□□□□□ -0.19
VPS39-208ENST00000564994 HIRAP54198 1017 aaPredicted RBP13.84□□□□□ -0.19
VPS39-208ENST00000564994 LINS1Q8NG48 757 aa13.84□□□□□ -0.19
VPS39-208ENST00000564994 EYA3Q99504 573 aa13.84□□□□□ -0.19
VPS39-208ENST00000564994 BCL2L13Q9BXK5 485 aa13.84□□□□□ -0.19
VPS39-208ENST00000564994 MYH16Q9H6N6 1097 aa13.84□□□□□ -0.19
VPS39-208ENST00000564994 ANKIB1Q9P2G1 1089 aa13.84□□□□□ -0.19
VPS39-208ENST00000564994 F6X3S4 739 aa13.83□□□□□ -0.2
VPS39-208ENST00000564994 TRAF5O00463 557 aa13.83□□□□□ -0.2
VPS39-208ENST00000564994 TRPM4Q8TD43 1214 aa13.83□□□□□ -0.2
VPS39-208ENST00000564994 PLA2G12BQ9BX93 195 aa13.83□□□□□ -0.2
VPS39-208ENST00000564994 ZC3H12CQ9C0D7 883 aaKnown RBP13.83□□□□□ -0.2
VPS39-208ENST00000564994 CNOT7Q9UIV1 285 aaKnown RBP13.83□□□□□ -0.2
VPS39-208ENST00000564994 GGA1Q9UJY5 639 aa13.83□□□□□ -0.2
VPS39-208ENST00000564994 HSPA1AP0DMV8 641 aaKnown RBP13.82□□□□□ -0.2
VPS39-208ENST00000564994 HSPA1BP0DMV9 641 aaKnown RBP13.82□□□□□ -0.2
VPS39-208ENST00000564994 MICALL2Q8IY33 904 aa13.82□□□□□ -0.2
VPS39-208ENST00000564994 CDC5LQ99459 802 aaKnown RBP13.82□□□□□ -0.2
VPS39-208ENST00000564994 PGAP2Q9UHJ9 254 aa13.82□□□□□ -0.2
VPS39-208ENST00000564994 ZNF646O15015 1829 aaPredicted RBP13.82□□□□□ -0.2
VPS39-208ENST00000564994 XDHP47989 1333 aa13.82□□□□□ -0.2
VPS39-208ENST00000564994 EGFRP00533 1210 aa13.81□□□□□ -0.2
VPS39-208ENST00000564994 CSF1RP07333 972 aa13.81□□□□□ -0.2
VPS39-208ENST00000564994 VEGFBP49765 207 aa13.81□□□□□ -0.2
VPS39-208ENST00000564994 BEND3Q5T5X7 828 aa13.81□□□□□ -0.2
VPS39-208ENST00000564994 IFFO2Q5TF58 517 aa13.81□□□□□ -0.2
VPS39-208ENST00000564994 CST9Q5W186 159 aa13.81□□□□□ -0.2
VPS39-208ENST00000564994 DPF2Q92785 391 aa13.81□□□□□ -0.2
VPS39-208ENST00000564994 BSDC1Q9NW68 430 aaPredicted RBP13.81□□□□□ -0.2
VPS39-208ENST00000564994 MINPP1Q9UNW1 487 aa13.81□□□□□ -0.2
VPS39-208ENST00000564994 A0A1B0GUL6 1792 aa13.81□□□□□ -0.2
VPS39-208ENST00000564994 RASSF10A6NK89 507 aa13.8□□□□□ -0.2
VPS39-208ENST00000564994 ATP2B4P23634 1241 aa13.8□□□□□ -0.2
VPS39-208ENST00000564994 FAM161AQ3B820 660 aa13.8□□□□□ -0.2
VPS39-208ENST00000564994 SAMD7Q7Z3H4 446 aa13.8□□□□□ -0.2
VPS39-208ENST00000564994 GLIS2Q9BZE0 524 aaPredicted RBP13.8□□□□□ -0.2
VPS39-208ENST00000564994 H7C1D1 291 aa13.79□□□□□ -0.2
VPS39-208ENST00000564994 VIL1P09327 827 aaKnown RBP13.79□□□□□ -0.2
VPS39-208ENST00000564994 ITGA6P23229 1130 aa13.79□□□□□ -0.2
VPS39-208ENST00000564994 DEFB115Q30KQ5 88 aa13.79□□□□□ -0.2
VPS39-208ENST00000564994 COL13A1Q5TAT6 717 aaPredicted RBP13.79□□□□□ -0.2
VPS39-208ENST00000564994 ZC3H15Q8WU90 426 aaKnown RBP13.79□□□□□ -0.2
VPS39-208ENST00000564994 ABT1Q9ULW3 272 aaKnown RBP13.79□□□□□ -0.2
VPS39-208ENST00000564994 RPS12P25398 132 aaKnown RBP13.78□□□□□ -0.2
VPS39-208ENST00000564994 FOXO4P98177 505 aa13.78□□□□□ -0.2
VPS39-208ENST00000564994 TBC1D10BQ4KMP7 808 aaPredicted RBP13.78□□□□□ -0.2
VPS39-208ENST00000564994 MED23Q9ULK4 1368 aa13.78□□□□□ -0.2
VPS39-208ENST00000564994 G3V3G9 751 aa13.77□□□□□ -0.21
VPS39-208ENST00000564994 ZNF609O15014 1411 aa13.77□□□□□ -0.21
VPS39-208ENST00000564994 IGHMBP2P38935 993 aaKnown RBP13.77□□□□□ -0.21
VPS39-208ENST00000564994 CCT4P50991 539 aaKnown RBP13.77□□□□□ -0.21
VPS39-208ENST00000564994 EPHA10Q5JZY3 1008 aa13.77□□□□□ -0.21
VPS39-208ENST00000564994 DCAF8Q5TAQ9 597 aa13.77□□□□□ -0.21
VPS39-208ENST00000564994 DLK2Q6UY11 383 aa13.77□□□□□ -0.21
VPS39-208ENST00000564994 TXNRD3Q86VQ6 643 aa13.77□□□□□ -0.21
VPS39-208ENST00000564994 THSD7BQ9C0I4 1608 aa13.76□□□□□ -0.21
VPS39-208ENST00000564994 KLRK1P26718 216 aa13.76□□□□□ -0.21
VPS39-208ENST00000564994 SLFN5Q08AF3 891 aa13.76□□□□□ -0.21
VPS39-208ENST00000564994 RBM26Q5T8P6 1007 aaKnown RBP13.76□□□□□ -0.21
VPS39-208ENST00000564994 RSBN1LQ6PCB5 846 aaPredicted RBP13.76□□□□□ -0.21
VPS39-208ENST00000564994 CDC37L1Q7L3B6 337 aa13.76□□□□□ -0.21
VPS39-208ENST00000564994 TLL2Q9Y6L7 1015 aa13.76□□□□□ -0.21
VPS39-208ENST00000564994 WDR33Q9C0J8 1336 aaKnown RBP13.75□□□□□ -0.21
VPS39-208ENST00000564994 ANKRD18BA2A2Z9 1011 aa13.75□□□□□ -0.21
VPS39-208ENST00000564994 E9PSI1 815 aa13.75□□□□□ -0.21
VPS39-208ENST00000564994 GRM8O00222 908 aa13.75□□□□□ -0.21
VPS39-208ENST00000564994 CELF2O95319 508 aaKnown RBP13.75□□□□□ -0.21
VPS39-208ENST00000564994 SLC4A10Q6U841 1118 aa13.75□□□□□ -0.21
VPS39-208ENST00000564994 PODNQ7Z5L7 613 aa13.75□□□□□ -0.21
VPS39-208ENST00000564994 USP48Q86UV5 1035 aa13.75□□□□□ -0.21
VPS39-208ENST00000564994 MRPL50Q8N5N7 158 aaKnown RBP13.75□□□□□ -0.21
VPS39-208ENST00000564994 CDCA7LQ96GN5 454 aa13.75□□□□□ -0.21
VPS39-208ENST00000564994 GMLQ99445 158 aa13.75□□□□□ -0.21
VPS39-208ENST00000564994 MPHOSPH8Q99549 860 aa13.75□□□□□ -0.21
VPS39-208ENST00000564994 LEMD3Q9Y2U8 911 aa13.75□□□□□ -0.21
VPS39-208ENST00000564994 ZNF804BA4D1E1 1349 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 ASTN2O75129 1339 aaPredicted RBP13.74□□□□□ -0.21
VPS39-208ENST00000564994 USP17L3A6NCW0 530 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 USP17L4A6NCW7 530 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 FOXN1O15353 648 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 ALDH1L1O75891 902 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 ZNF280AP59817 542 aaPredicted RBP13.74□□□□□ -0.21
VPS39-208ENST00000564994 CHRNDQ07001 517 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 KIF4BQ2VIQ3 1234 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 CYP4F22Q6NT55 531 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 LMBR1LQ6UX01 489 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms