RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SLC51AQ86UW1 340 aa16.91■□□□□ 0.3
CLK3-216ENST00000564468 API5Q9BZZ5 524 aaKnown RBP16.91■□□□□ 0.3
CLK3-216ENST00000564468 ZNRF3Q9ULT6 936 aa16.91■□□□□ 0.3
CLK3-216ENST00000564468 COL4A1P02462 1669 aa16.91■□□□□ 0.3
CLK3-216ENST00000564468 DUOX1Q9NRD9 1551 aa16.9■□□□□ 0.3
CLK3-216ENST00000564468 ANKRD18BA2A2Z9 1011 aa16.9■□□□□ 0.3
CLK3-216ENST00000564468 RARSP54136 660 aaKnown RBP16.9■□□□□ 0.3
CLK3-216ENST00000564468 MPHOSPH8Q99549 860 aa16.9■□□□□ 0.3
CLK3-216ENST00000564468 ZC3H12CQ9C0D7 883 aaKnown RBP16.9■□□□□ 0.3
CLK3-216ENST00000564468 GGA1Q9UJY5 639 aa16.9■□□□□ 0.3
CLK3-216ENST00000564468 XDHP47989 1333 aa16.9■□□□□ 0.3
CLK3-216ENST00000564468 ZBED9Q6R2W3 1325 aa16.9■□□□□ 0.3
CLK3-216ENST00000564468 KIF16BQ96L93 1317 aa16.9■□□□□ 0.3
CLK3-216ENST00000564468 COL4A5P29400 1685 aa16.89■□□□□ 0.29
CLK3-216ENST00000564468 POTECB2RU33 542 aa16.89■□□□□ 0.29
CLK3-216ENST00000564468 ATP2B4P23634 1241 aa16.89■□□□□ 0.29
CLK3-216ENST00000564468 IFIT5Q13325 482 aaKnown RBP16.89■□□□□ 0.29
CLK3-216ENST00000564468 TBC1D16Q8TBP0 767 aa16.89■□□□□ 0.29
CLK3-216ENST00000564468 POLLQ9UGP5 575 aa16.89■□□□□ 0.29
CLK3-216ENST00000564468 CHMP3Q9Y3E7 222 aa16.89■□□□□ 0.29
CLK3-216ENST00000564468 GJA3Q9Y6H8 435 aa16.89■□□□□ 0.29
CLK3-216ENST00000564468 G3V3G9 751 aa16.88■□□□□ 0.29
CLK3-216ENST00000564468 IPO8O15397 1037 aaKnown RBP16.88■□□□□ 0.29
CLK3-216ENST00000564468 UFL1O94874 794 aa16.88■□□□□ 0.29
CLK3-216ENST00000564468 LMOD1P29536 600 aaPredicted RBP16.88■□□□□ 0.29
CLK3-216ENST00000564468 CCT4P50991 539 aaKnown RBP16.88■□□□□ 0.29
CLK3-216ENST00000564468 FOXO4P98177 505 aa16.88■□□□□ 0.29
CLK3-216ENST00000564468 TNIP1Q15025 636 aa16.88■□□□□ 0.29
CLK3-216ENST00000564468 CCDC57Q2TAC2 916 aa16.88■□□□□ 0.29
CLK3-216ENST00000564468 FAM161AQ3B820 660 aa16.88■□□□□ 0.29
CLK3-216ENST00000564468 DCAF8Q5TAQ9 597 aa16.88■□□□□ 0.29
CLK3-216ENST00000564468 ARHGAP45Q92619 1136 aa16.88■□□□□ 0.29
CLK3-216ENST00000564468 HACL1Q9UJ83 578 aa16.88■□□□□ 0.29
CLK3-216ENST00000564468 NOB1Q9ULX3 412 aaKnown RBP16.88■□□□□ 0.29
CLK3-216ENST00000564468 UTYO14607 1347 aa16.88■□□□□ 0.29
CLK3-216ENST00000564468 CIAPIN1Q6FI81 312 aa16.87■□□□□ 0.29
CLK3-216ENST00000564468 LMBR1LQ6UX01 489 aa16.87■□□□□ 0.29
CLK3-216ENST00000564468 AIDAQ96BJ3 306 aa16.87■□□□□ 0.29
CLK3-216ENST00000564468 ANKRD2Q9GZV1 360 aa16.87■□□□□ 0.29
CLK3-216ENST00000564468 MKRN1Q9UHC7 482 aaKnown RBP16.87■□□□□ 0.29
CLK3-216ENST00000564468 MINPP1Q9UNW1 487 aa16.87■□□□□ 0.29
CLK3-216ENST00000564468 RIMBP2O15034 1052 aa16.86■□□□□ 0.29
CLK3-216ENST00000564468 TAF7LQ5H9L4 462 aa16.86■□□□□ 0.29
CLK3-216ENST00000564468 PNMA8AQ86V59 439 aaPredicted RBP16.86■□□□□ 0.29
CLK3-216ENST00000564468 TAF1DQ9H5J8 278 aaPredicted RBP16.86■□□□□ 0.29
CLK3-216ENST00000564468 HDAC5Q9UQL6 1122 aa16.86■□□□□ 0.29
CLK3-216ENST00000564468 NBPF7P0C2Y1 421 aaPredicted RBP16.85■□□□□ 0.29
CLK3-216ENST00000564468 EPHX2P34913 555 aa16.85■□□□□ 0.29
CLK3-216ENST00000564468 CXCL9Q07325 125 aa16.85■□□□□ 0.29
CLK3-216ENST00000564468 PRDM10Q9NQV6 1147 aa16.85■□□□□ 0.29
CLK3-216ENST00000564468 LEMD3Q9Y2U8 911 aa16.85■□□□□ 0.29
CLK3-216ENST00000564468 PSME4Q14997 1843 aa16.84■□□□□ 0.29
CLK3-216ENST00000564468 SUCLG2Q96I99 432 aa16.84■□□□□ 0.29
CLK3-216ENST00000564468 DBNDD1Q9H9R9 158 aa16.84■□□□□ 0.29
CLK3-216ENST00000564468 ECE2O60344 883 aa16.83■□□□□ 0.28
CLK3-216ENST00000564468 RAD17O75943 681 aa16.83■□□□□ 0.28
CLK3-216ENST00000564468 EPHA10Q5JZY3 1008 aa16.83■□□□□ 0.28
CLK3-216ENST00000564468 LDHDQ86WU2 507 aa16.83■□□□□ 0.28
CLK3-216ENST00000564468 USP44Q9H0E7 712 aa16.83■□□□□ 0.28
CLK3-216ENST00000564468 A0A1B0GUL6 1792 aa16.82■□□□□ 0.28
CLK3-216ENST00000564468 MED23Q9ULK4 1368 aa16.82■□□□□ 0.28
CLK3-216ENST00000564468 KCNJ4P48050 445 aa16.82■□□□□ 0.28
CLK3-216ENST00000564468 CTCFP49711 727 aaPredicted RBP16.82■□□□□ 0.28
CLK3-216ENST00000564468 DOK7Q18PE1 504 aa16.82■□□□□ 0.28
CLK3-216ENST00000564468 EAPPQ56P03 285 aaPredicted RBP16.82■□□□□ 0.28
CLK3-216ENST00000564468 LDHAL6AQ6ZMR3 332 aa16.82■□□□□ 0.28
CLK3-216ENST00000564468 SCN9AQ15858 1988 aa16.82■□□□□ 0.28
CLK3-216ENST00000564468 CNTNAP1P78357 1384 aa16.81■□□□□ 0.28
CLK3-216ENST00000564468 YDJCA8MPS7 323 aa16.81■□□□□ 0.28
CLK3-216ENST00000564468 SCNN1DP51172 638 aa16.81■□□□□ 0.28
CLK3-216ENST00000564468 CHRNDQ07001 517 aa16.81■□□□□ 0.28
CLK3-216ENST00000564468 RABL6Q3YEC7 729 aaPredicted RBP16.81■□□□□ 0.28
CLK3-216ENST00000564468 PODNQ7Z5L7 613 aa16.81■□□□□ 0.28
CLK3-216ENST00000564468 GPR101Q96P66 508 aaPredicted RBP16.81■□□□□ 0.28
CLK3-216ENST00000564468 BICC1Q9H694 974 aaKnown RBP16.81■□□□□ 0.28
CLK3-216ENST00000564468 CNNM1Q9NRU3 951 aa16.81■□□□□ 0.28
CLK3-216ENST00000564468 CLEC11AQ9Y240 323 aa16.81■□□□□ 0.28
CLK3-216ENST00000564468 ZNF804BA4D1E1 1349 aa16.8■□□□□ 0.28
CLK3-216ENST00000564468 TMEM88BA6NKF7 163 aa16.8■□□□□ 0.28
CLK3-216ENST00000564468 FOXN1O15353 648 aa16.8■□□□□ 0.28
CLK3-216ENST00000564468 UBTFL1P0CB47 393 aaPredicted RBP16.8■□□□□ 0.28
CLK3-216ENST00000564468 RPS12P25398 132 aaKnown RBP16.8■□□□□ 0.28
CLK3-216ENST00000564468 ATF7IPQ6VMQ6 1270 aa16.8■□□□□ 0.28
CLK3-216ENST00000564468 USP50Q70EL3 339 aaPredicted RBP16.8■□□□□ 0.28
CLK3-216ENST00000564468 FRAT1Q92837 279 aaPredicted RBP16.8■□□□□ 0.28
CLK3-216ENST00000564468 KAZALD1Q96I82 304 aa16.8■□□□□ 0.28
CLK3-216ENST00000564468 ADARB2Q9NS39 739 aaKnown RBP16.8■□□□□ 0.28
CLK3-216ENST00000564468 GPRC5DQ9NZD1 345 aa16.8■□□□□ 0.28
CLK3-216ENST00000564468 PSMD14O00487 310 aa16.79■□□□□ 0.28
CLK3-216ENST00000564468 BCAR3O75815 825 aa16.79■□□□□ 0.28
CLK3-216ENST00000564468 EPS15P42566 896 aa16.79■□□□□ 0.28
CLK3-216ENST00000564468 GMPSP49915 693 aaPredicted RBP16.79■□□□□ 0.28
CLK3-216ENST00000564468 INTS3Q68E01 1043 aaKnown RBP16.79■□□□□ 0.28
CLK3-216ENST00000564468 DPF2Q92785 391 aa16.79■□□□□ 0.28
CLK3-216ENST00000564468 COA1Q9GZY4 146 aa16.79■□□□□ 0.28
CLK3-216ENST00000564468 ADAMTSL1Q8N6G6 1762 aa16.79■□□□□ 0.28
CLK3-216ENST00000564468 H7C1D1 291 aa16.78■□□□□ 0.28
CLK3-216ENST00000564468 ZKSCAN2Q63HK3 967 aa16.78■□□□□ 0.28
CLK3-216ENST00000564468 ZNF594Q96JF6 807 aaPredicted RBP16.78■□□□□ 0.28
CLK3-216ENST00000564468 PASKQ96RG2 1323 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms