RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 VIL1P09327 827 aaKnown RBP13.7□□□□□ -0.22
SF3B3-204ENST00000563739 RPS12P25398 132 aaKnown RBP13.7□□□□□ -0.22
SF3B3-204ENST00000563739 ZNF157P51786 506 aaPredicted RBP13.7□□□□□ -0.22
SF3B3-204ENST00000563739 KIF4BQ2VIQ3 1234 aa13.7□□□□□ -0.22
SF3B3-204ENST00000563739 MOB2Q70IA6 237 aa13.7□□□□□ -0.22
SF3B3-204ENST00000563739 TBC1D16Q8TBP0 767 aa13.7□□□□□ -0.22
SF3B3-204ENST00000563739 NECTIN2Q92692 538 aa13.7□□□□□ -0.22
SF3B3-204ENST00000563739 GMLQ99445 158 aa13.7□□□□□ -0.22
SF3B3-204ENST00000563739 TRMT112Q9UI30 125 aaKnown RBP13.7□□□□□ -0.22
SF3B3-204ENST00000563739 ZNF280AP59817 542 aaPredicted RBP13.69□□□□□ -0.22
SF3B3-204ENST00000563739 AIMP1Q12904 312 aaKnown RBP13.69□□□□□ -0.22
SF3B3-204ENST00000563739 WASHC4Q2M389 1173 aa13.69□□□□□ -0.22
SF3B3-204ENST00000563739 RBM26Q5T8P6 1007 aaKnown RBP13.69□□□□□ -0.22
SF3B3-204ENST00000563739 CNKSR2Q8WXI2 1034 aa13.69□□□□□ -0.22
SF3B3-204ENST00000563739 CCDC102AQ96A19 550 aa13.69□□□□□ -0.22
SF3B3-204ENST00000563739 SCAF8Q9UPN6 1271 aaKnown RBP13.69□□□□□ -0.22
SF3B3-204ENST00000563739 MAPK8IP2Q13387 824 aaPredicted RBP13.68□□□□□ -0.22
SF3B3-204ENST00000563739 TMC4Q7Z404 712 aa13.68□□□□□ -0.22
SF3B3-204ENST00000563739 C2orf69Q8N8R5 385 aa13.68□□□□□ -0.22
SF3B3-204ENST00000563739 FAM89AQ96GI7 184 aa13.68□□□□□ -0.22
SF3B3-204ENST00000563739 WTIPA6NIX2 430 aaPredicted RBP13.67□□□□□ -0.22
SF3B3-204ENST00000563739 HSP90AB3PQ58FF7 597 aa13.67□□□□□ -0.22
SF3B3-204ENST00000563739 R3HDMLQ9H3Y0 253 aa13.67□□□□□ -0.22
SF3B3-204ENST00000563739 PODXL2Q9NZ53 605 aa13.67□□□□□ -0.22
SF3B3-204ENST00000563739 CHPF2Q9P2E5 772 aa13.67□□□□□ -0.22
SF3B3-204ENST00000563739 NSFL1CQ9UNZ2 370 aaKnown RBP13.67□□□□□ -0.22
SF3B3-204ENST00000563739 A0A1B0GUL6 1792 aa13.67□□□□□ -0.22
SF3B3-204ENST00000563739 ANGEL2Q5VTE6 544 aaKnown RBP13.66□□□□□ -0.22
SF3B3-204ENST00000563739 ZNF296Q8WUU4 475 aaPredicted RBP13.66□□□□□ -0.22
SF3B3-204ENST00000563739 DCPSQ96C86 337 aaKnown RBP13.66□□□□□ -0.22
SF3B3-204ENST00000563739 SEC31BQ9NQW1 1179 aa13.66□□□□□ -0.22
SF3B3-204ENST00000563739 MYH3P11055 1940 aa13.65□□□□□ -0.22
SF3B3-204ENST00000563739 ATP5J2-PTCD1G3V325 749 aa13.65□□□□□ -0.22
SF3B3-204ENST00000563739 TMX4Q9H1E5 349 aaPredicted RBP13.65□□□□□ -0.22
SF3B3-204ENST00000563739 BABAM1Q9NWV8 329 aa13.65□□□□□ -0.22
SF3B3-204ENST00000563739 SSC5DA1L4H1 1573 aa13.65□□□□□ -0.22
SF3B3-204ENST00000563739 OTOFQ9HC10 1997 aa13.64□□□□□ -0.23
SF3B3-204ENST00000563739 C6orf229H3BNL8 230 aa13.64□□□□□ -0.23
SF3B3-204ENST00000563739 CHL1O00533 1208 aa13.64□□□□□ -0.23
SF3B3-204ENST00000563739 TBC1D8O95759 1140 aa13.64□□□□□ -0.23
SF3B3-204ENST00000563739 SCARF1Q14162 830 aa13.64□□□□□ -0.23
SF3B3-204ENST00000563739 PLBD2Q8NHP8 589 aa13.64□□□□□ -0.23
SF3B3-204ENST00000563739 ECM29Q5VYK3 1845 aa13.63□□□□□ -0.23
SF3B3-204ENST00000563739 KCNA4P22459 653 aa13.63□□□□□ -0.23
SF3B3-204ENST00000563739 TMPOP42166 694 aaKnown RBP13.63□□□□□ -0.23
SF3B3-204ENST00000563739 RTL5Q5HYW3 569 aaPredicted RBP13.63□□□□□ -0.23
SF3B3-204ENST00000563739 PRAMEF18Q5VWM3 479 aa13.63□□□□□ -0.23
SF3B3-204ENST00000563739 RSBN1LQ6PCB5 846 aaPredicted RBP13.63□□□□□ -0.23
SF3B3-204ENST00000563739 SULF1Q8IWU6 871 aa13.63□□□□□ -0.23
SF3B3-204ENST00000563739 TRIM35Q9UPQ4 493 aa13.63□□□□□ -0.23
SF3B3-204ENST00000563739 PITPNM2Q9BZ72 1349 aa13.63□□□□□ -0.23
SF3B3-204ENST00000563739 SZT2Q5T011 3432 aa13.62□□□□□ -0.23
SF3B3-204ENST00000563739 UBE2Q2LH0YL09 131 aa13.62□□□□□ -0.23
SF3B3-204ENST00000563739 RIPK4P57078 832 aa13.62□□□□□ -0.23
SF3B3-204ENST00000563739 CAP1Q01518 475 aa13.62□□□□□ -0.23
SF3B3-204ENST00000563739 TRIM28Q13263 835 aaKnown RBP13.62□□□□□ -0.23
SF3B3-204ENST00000563739 IRS4O14654 1257 aaPredicted RBP13.61□□□□□ -0.23
SF3B3-204ENST00000563739 UFL1O94874 794 aa13.61□□□□□ -0.23
SF3B3-204ENST00000563739 RPS8P62241 208 aaKnown RBP13.61□□□□□ -0.23
SF3B3-204ENST00000563739 FKBP1BP68106 108 aa13.61□□□□□ -0.23
SF3B3-204ENST00000563739 NBPF9Q3BBW0 867 aa13.61□□□□□ -0.23
SF3B3-204ENST00000563739 NOM1Q5C9Z4 860 aaKnown RBP13.61□□□□□ -0.23
SF3B3-204ENST00000563739 AGBL3Q8NEM8 1001 aa13.61□□□□□ -0.23
SF3B3-204ENST00000563739 EYA3Q99504 573 aa13.61□□□□□ -0.23
SF3B3-204ENST00000563739 MXD3Q9BW11 206 aa13.61□□□□□ -0.23
SF3B3-204ENST00000563739 CFHR5Q9BXR6 569 aa13.61□□□□□ -0.23
SF3B3-204ENST00000563739 MYOZ2Q9NPC6 264 aa13.61□□□□□ -0.23
SF3B3-204ENST00000563739 MAPK8IP3Q9UPT6 1336 aa13.61□□□□□ -0.23
SF3B3-204ENST00000563739 GPR25O00155 361 aa13.6□□□□□ -0.23
SF3B3-204ENST00000563739 TM4SF4P48230 202 aa13.6□□□□□ -0.23
SF3B3-204ENST00000563739 KIAA0100Q14667 2235 aaKnown RBP13.6□□□□□ -0.23
SF3B3-204ENST00000563739 ZSWIM8A7E2V4 1837 aa13.6□□□□□ -0.23
SF3B3-204ENST00000563739 CUL9Q8IWT3 2517 aa13.59□□□□□ -0.23
SF3B3-204ENST00000563739 HDGFL1Q5TGJ6 251 aa13.59□□□□□ -0.23
SF3B3-204ENST00000563739 FBXO46Q6PJ61 603 aaPredicted RBP13.59□□□□□ -0.23
SF3B3-204ENST00000563739 ANKRD13DQ6ZTN6 518 aa13.59□□□□□ -0.23
SF3B3-204ENST00000563739 A0A0C4DFX4 3053 aa13.58□□□□□ -0.23
SF3B3-204ENST00000563739 POTEFA5A3E0 1075 aa13.58□□□□□ -0.24
SF3B3-204ENST00000563739 DACT2Q5SW24 774 aa13.58□□□□□ -0.24
SF3B3-204ENST00000563739 REM2Q8IYK8 340 aaPredicted RBP13.58□□□□□ -0.24
SF3B3-204ENST00000563739 JARID2Q92833 1246 aaPredicted RBP13.58□□□□□ -0.24
SF3B3-204ENST00000563739 ZBED3Q96IU2 234 aaPredicted RBP13.58□□□□□ -0.24
SF3B3-204ENST00000563739 GGA1Q9UJY5 639 aa13.58□□□□□ -0.24
SF3B3-204ENST00000563739 FZD1Q9UP38 647 aa13.58□□□□□ -0.24
SF3B3-204ENST00000563739 MED23Q9ULK4 1368 aa13.58□□□□□ -0.24
SF3B3-204ENST00000563739 HOXB7P09629 217 aa13.57□□□□□ -0.24
SF3B3-204ENST00000563739 USP17L8P0C7I0 530 aa13.57□□□□□ -0.24
SF3B3-204ENST00000563739 PTPN12Q05209 780 aaKnown RBP13.57□□□□□ -0.24
SF3B3-204ENST00000563739 MKRN3Q13064 507 aaKnown RBP13.57□□□□□ -0.24
SF3B3-204ENST00000563739 PKN2Q16513 984 aaKnown RBP13.57□□□□□ -0.24
SF3B3-204ENST00000563739 TXNRD3Q86VQ6 643 aa13.57□□□□□ -0.24
SF3B3-204ENST00000563739 ZBTB38Q8NAP3 1195 aaPredicted RBP13.57□□□□□ -0.24
SF3B3-204ENST00000563739 ZC3H12CQ9C0D7 883 aaKnown RBP13.57□□□□□ -0.24
SF3B3-204ENST00000563739 PHAXQ9H814 394 aaKnown RBP13.57□□□□□ -0.24
SF3B3-204ENST00000563739 WNT10BO00744 389 aa13.56□□□□□ -0.24
SF3B3-204ENST00000563739 NEFMP07197 916 aa13.56□□□□□ -0.24
SF3B3-204ENST00000563739 KLRK1P26718 216 aa13.56□□□□□ -0.24
SF3B3-204ENST00000563739 HABP4Q5JVS0 413 aaKnown RBP13.56□□□□□ -0.24
SF3B3-204ENST00000563739 LDLRAD1Q5T700 205 aa13.56□□□□□ -0.24
SF3B3-204ENST00000563739 CCDC85AQ96PX6 553 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms