RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 RIC1Q4ADV7 1423 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 H7C1W4 665 aa10.96□□□□□ -0.65
VPS39-207ENST00000563692 HOXA10P31260 410 aaPredicted RBP10.96□□□□□ -0.65
VPS39-207ENST00000563692 APLP1P51693 650 aa10.96□□□□□ -0.65
VPS39-207ENST00000563692 SLC10A5Q5PT55 438 aa10.96□□□□□ -0.65
VPS39-207ENST00000563692 CASC1Q6TDU7 716 aa10.96□□□□□ -0.65
VPS39-207ENST00000563692 SMC1BQ8NDV3 1235 aa10.96□□□□□ -0.65
VPS39-207ENST00000563692 OSBPL3Q9H4L5 887 aa10.96□□□□□ -0.65
VPS39-207ENST00000563692 ZNF277Q9NRM2 450 aaPredicted RBP10.96□□□□□ -0.65
VPS39-207ENST00000563692 PPEF1O14829 653 aaPredicted RBP10.95□□□□□ -0.66
VPS39-207ENST00000563692 HSP90B1P14625 803 aaKnown RBP10.95□□□□□ -0.66
VPS39-207ENST00000563692 TTC22Q5TAA0 569 aa10.95□□□□□ -0.66
VPS39-207ENST00000563692 DDX46Q7L014 1031 aaKnown RBP10.95□□□□□ -0.66
VPS39-207ENST00000563692 SYNE4Q8N205 404 aa10.95□□□□□ -0.66
VPS39-207ENST00000563692 RHPN1Q8TCX5 695 aa10.95□□□□□ -0.66
VPS39-207ENST00000563692 JDP2Q8WYK2 163 aa10.95□□□□□ -0.66
VPS39-207ENST00000563692 IPO9Q96P70 1041 aaKnown RBP10.95□□□□□ -0.66
VPS39-207ENST00000563692 BICC1Q9H694 974 aaKnown RBP10.95□□□□□ -0.66
VPS39-207ENST00000563692 SLX4Q8IY92 1834 aa10.95□□□□□ -0.66
VPS39-207ENST00000563692 NUP98P52948 1817 aa10.94□□□□□ -0.66
VPS39-207ENST00000563692 IQCA1LA6NCM1 817 aa10.94□□□□□ -0.66
VPS39-207ENST00000563692 HCLS1P14317 486 aaPredicted RBP10.94□□□□□ -0.66
VPS39-207ENST00000563692 IARSP41252 1262 aaKnown RBP10.94□□□□□ -0.66
VPS39-207ENST00000563692 OLFM4Q6UX06 510 aa10.94□□□□□ -0.66
VPS39-207ENST00000563692 UBE3BQ7Z3V4 1068 aa10.94□□□□□ -0.66
VPS39-207ENST00000563692 CLASRPQ8N2M8 674 aaKnown RBP10.94□□□□□ -0.66
VPS39-207ENST00000563692 PSMD1Q99460 953 aa10.94□□□□□ -0.66
VPS39-207ENST00000563692 ISCA1Q9BUE6 129 aa10.94□□□□□ -0.66
VPS39-207ENST00000563692 SBF1O95248 1867 aa10.93□□□□□ -0.66
VPS39-207ENST00000563692 CDC45O75419 566 aa10.93□□□□□ -0.66
VPS39-207ENST00000563692 BBOX1O75936 387 aa10.93□□□□□ -0.66
VPS39-207ENST00000563692 MX1P20591 662 aa10.93□□□□□ -0.66
VPS39-207ENST00000563692 PDE1AP54750 535 aa10.93□□□□□ -0.66
VPS39-207ENST00000563692 RABL6Q3YEC7 729 aaPredicted RBP10.93□□□□□ -0.66
VPS39-207ENST00000563692 GPATCH3Q96I76 525 aa10.93□□□□□ -0.66
VPS39-207ENST00000563692 KAZALD1Q96I82 304 aa10.93□□□□□ -0.66
VPS39-207ENST00000563692 DAXXQ9UER7 740 aaPredicted RBP10.93□□□□□ -0.66
VPS39-207ENST00000563692 STAP2Q9UGK3 403 aa10.93□□□□□ -0.66
VPS39-207ENST00000563692 AOX1Q06278 1338 aa10.92□□□□□ -0.66
VPS39-207ENST00000563692 DDNO94850 711 aaPredicted RBP10.92□□□□□ -0.66
VPS39-207ENST00000563692 EIF6P56537 245 aaKnown RBP10.92□□□□□ -0.66
VPS39-207ENST00000563692 C3orf67Q6ZVT6 689 aa10.92□□□□□ -0.66
VPS39-207ENST00000563692 TMC4Q7Z404 712 aa10.92□□□□□ -0.66
VPS39-207ENST00000563692 LARGE2Q8N3Y3 721 aa10.92□□□□□ -0.66
VPS39-207ENST00000563692 SUPT20HQ8NEM7 779 aa10.92□□□□□ -0.66
VPS39-207ENST00000563692 COPRSQ9NQ92 184 aa10.92□□□□□ -0.66
VPS39-207ENST00000563692 ATP6V0A2Q9Y487 856 aa10.92□□□□□ -0.66
VPS39-207ENST00000563692 TNRC6CQ9HCJ0 1690 aaKnown RBP10.92□□□□□ -0.66
VPS39-207ENST00000563692 FER1L6Q2WGJ9 1857 aa10.91□□□□□ -0.66
VPS39-207ENST00000563692 ARFGEF2Q9Y6D5 1785 aa10.91□□□□□ -0.66
VPS39-207ENST00000563692 ERC2O15083 957 aa10.91□□□□□ -0.66
VPS39-207ENST00000563692 SEC24BO95487 1268 aa10.91□□□□□ -0.66
VPS39-207ENST00000563692 PCCAP05165 728 aaPredicted RBP10.91□□□□□ -0.66
VPS39-207ENST00000563692 IFIT2P09913 472 aaKnown RBP10.91□□□□□ -0.66
VPS39-207ENST00000563692 CASP7P55210 303 aa10.91□□□□□ -0.66
VPS39-207ENST00000563692 GRAPQ13588 217 aa10.91□□□□□ -0.66
VPS39-207ENST00000563692 LMBR1LQ6UX01 489 aa10.91□□□□□ -0.66
VPS39-207ENST00000563692 NIM1KQ8IY84 436 aa10.91□□□□□ -0.66
VPS39-207ENST00000563692 ZBTB38Q8NAP3 1195 aaPredicted RBP10.91□□□□□ -0.66
VPS39-207ENST00000563692 GRAPLQ8TC17 118 aaPredicted RBP10.91□□□□□ -0.66
VPS39-207ENST00000563692 OTUD7AQ8TE49 926 aaPredicted RBP10.91□□□□□ -0.66
VPS39-207ENST00000563692 JARID2Q92833 1246 aaPredicted RBP10.91□□□□□ -0.66
VPS39-207ENST00000563692 FAM89AQ96GI7 184 aa10.91□□□□□ -0.66
VPS39-207ENST00000563692 IL1RAPL2Q9NP60 686 aa10.91□□□□□ -0.66
VPS39-207ENST00000563692 TTC41PQ6P2S7 1318 aa10.9□□□□□ -0.66
VPS39-207ENST00000563692 TIAM2Q8IVF5 1701 aa10.9□□□□□ -0.66
VPS39-207ENST00000563692 IRS4O14654 1257 aaPredicted RBP10.9□□□□□ -0.66
VPS39-207ENST00000563692 PPIP5K2O43314 1243 aa10.9□□□□□ -0.66
VPS39-207ENST00000563692 SDSP20132 328 aa10.9□□□□□ -0.66
VPS39-207ENST00000563692 MFAP1P55081 439 aaKnown RBP10.9□□□□□ -0.66
VPS39-207ENST00000563692 FOXO4P98177 505 aa10.9□□□□□ -0.66
VPS39-207ENST00000563692 RTL5Q5HYW3 569 aaPredicted RBP10.9□□□□□ -0.66
VPS39-207ENST00000563692 EPHA10Q5JZY3 1008 aa10.9□□□□□ -0.66
VPS39-207ENST00000563692 DPP8Q6V1X1 898 aaPredicted RBP10.9□□□□□ -0.66
VPS39-207ENST00000563692 SP8Q8IXZ3 490 aa10.9□□□□□ -0.66
VPS39-207ENST00000563692 L3MBTL3Q96JM7 780 aaPredicted RBP10.9□□□□□ -0.66
VPS39-207ENST00000563692 C22orf23Q9BZE7 217 aa10.9□□□□□ -0.66
VPS39-207ENST00000563692 CHMP3Q9Y3E7 222 aa10.9□□□□□ -0.66
VPS39-207ENST00000563692 CACNA1SQ13698 1873 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 ZNF541Q9H0D2 1346 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 TRIM6-TRIM34B2RNG4 842 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 FZD9O00144 591 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 GSPT1P15170 499 aaKnown RBP10.89□□□□□ -0.67
VPS39-207ENST00000563692 LMOD1P29536 600 aaPredicted RBP10.89□□□□□ -0.67
VPS39-207ENST00000563692 CCDC57Q2TAC2 916 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 TBC1D9Q6ZT07 1266 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 ERICH6Q7L0X2 663 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 GPC2Q8N158 579 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 MPNDQ8N594 471 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 PLA2G12BQ9BX93 195 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 VPS33BQ9H267 617 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 HACL1Q9UJ83 578 aa10.89□□□□□ -0.67
VPS39-207ENST00000563692 PA2G4Q9UQ80 394 aaKnown RBP10.89□□□□□ -0.67
VPS39-207ENST00000563692 SALL3Q9BXA9 1300 aa10.88□□□□□ -0.67
VPS39-207ENST00000563692 CDHR2Q9BYE9 1310 aa10.88□□□□□ -0.67
VPS39-207ENST00000563692 POTECB2RU33 542 aa10.88□□□□□ -0.67
VPS39-207ENST00000563692 GLRX3O76003 335 aaKnown RBP10.88□□□□□ -0.67
VPS39-207ENST00000563692 RFX5P48382 616 aaPredicted RBP10.88□□□□□ -0.67
VPS39-207ENST00000563692 PTPN12Q05209 780 aaKnown RBP10.88□□□□□ -0.67
VPS39-207ENST00000563692 BECN1Q14457 450 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms