RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 EPS15P42566 896 aa17.92■□□□□ 0.46
SMPD3-204ENST00000563396 SLFN5Q08AF3 891 aa17.92■□□□□ 0.46
SMPD3-204ENST00000563396 USP50Q70EL3 339 aaPredicted RBP17.92■□□□□ 0.46
SMPD3-204ENST00000563396 CREBZFQ9NS37 354 aa17.92■□□□□ 0.46
SMPD3-204ENST00000563396 F6X3S4 739 aa17.91■□□□□ 0.46
SMPD3-204ENST00000563396 C6orf229H3BNL8 230 aa17.91■□□□□ 0.46
SMPD3-204ENST00000563396 UFL1O94874 794 aa17.91■□□□□ 0.46
SMPD3-204ENST00000563396 CSF1RP07333 972 aa17.91■□□□□ 0.46
SMPD3-204ENST00000563396 GMPSP49915 693 aaPredicted RBP17.91■□□□□ 0.46
SMPD3-204ENST00000563396 TNIP1Q15025 636 aa17.91■□□□□ 0.46
SMPD3-204ENST00000563396 ADARB2Q9NS39 739 aaKnown RBP17.91■□□□□ 0.46
SMPD3-204ENST00000563396 BSDC1Q9NW68 430 aaPredicted RBP17.91■□□□□ 0.46
SMPD3-204ENST00000563396 MED23Q9ULK4 1368 aa17.91■□□□□ 0.46
SMPD3-204ENST00000563396 PCNTO95613 3336 aa17.9■□□□□ 0.46
SMPD3-204ENST00000563396 ECE2O60344 883 aa17.9■□□□□ 0.46
SMPD3-204ENST00000563396 RAD17O75943 681 aa17.9■□□□□ 0.46
SMPD3-204ENST00000563396 FAM161AQ3B820 660 aa17.9■□□□□ 0.46
SMPD3-204ENST00000563396 DBNDD1Q9H9R9 158 aa17.9■□□□□ 0.46
SMPD3-204ENST00000563396 GGA1Q9UJY5 639 aa17.9■□□□□ 0.46
SMPD3-204ENST00000563396 TRMT2AQ8IZ69 625 aaKnown RBP17.89■□□□□ 0.45
SMPD3-204ENST00000563396 GPR101Q96P66 508 aaPredicted RBP17.89■□□□□ 0.45
SMPD3-204ENST00000563396 ANKIB1Q9P2G1 1089 aa17.89■□□□□ 0.45
SMPD3-204ENST00000563396 ALDH1L1O75891 902 aa17.88■□□□□ 0.45
SMPD3-204ENST00000563396 ITGA6P23229 1130 aa17.88■□□□□ 0.45
SMPD3-204ENST00000563396 MAP1SQ66K74 1059 aaPredicted RBP17.88■□□□□ 0.45
SMPD3-204ENST00000563396 GRM8O00222 908 aa17.87■□□□□ 0.45
SMPD3-204ENST00000563396 PSMD14O00487 310 aa17.87■□□□□ 0.45
SMPD3-204ENST00000563396 RIMBP2O15034 1052 aa17.87■□□□□ 0.45
SMPD3-204ENST00000563396 ATP2B4P23634 1241 aa17.87■□□□□ 0.45
SMPD3-204ENST00000563396 RPS12P25398 132 aaKnown RBP17.87■□□□□ 0.45
SMPD3-204ENST00000563396 CNTROBQ8N137 903 aa17.87■□□□□ 0.45
SMPD3-204ENST00000563396 MRPL50Q8N5N7 158 aaKnown RBP17.87■□□□□ 0.45
SMPD3-204ENST00000563396 DPF2Q92785 391 aa17.87■□□□□ 0.45
SMPD3-204ENST00000563396 ZC3H12CQ9C0D7 883 aaKnown RBP17.87■□□□□ 0.45
SMPD3-204ENST00000563396 MINPP1Q9UNW1 487 aa17.87■□□□□ 0.45
SMPD3-204ENST00000563396 CLEC11AQ9Y240 323 aa17.87■□□□□ 0.45
SMPD3-204ENST00000563396 PTPRCP08575 1304 aa17.87■□□□□ 0.45
SMPD3-204ENST00000563396 CNTNAP1P78357 1384 aa17.87■□□□□ 0.45
SMPD3-204ENST00000563396 IGHMBP2P38935 993 aaKnown RBP17.86■□□□□ 0.45
SMPD3-204ENST00000563396 FOXO4P98177 505 aa17.86■□□□□ 0.45
SMPD3-204ENST00000563396 PGAP2Q9UHJ9 254 aa17.86■□□□□ 0.45
SMPD3-204ENST00000563396 UTYO14607 1347 aa17.86■□□□□ 0.45
SMPD3-204ENST00000563396 SSH1Q8WYL5 1049 aa17.85■□□□□ 0.45
SMPD3-204ENST00000563396 BCL2L13Q9BXK5 485 aa17.85■□□□□ 0.45
SMPD3-204ENST00000563396 SRCIN1Q9C0H9 1055 aa17.85■□□□□ 0.45
SMPD3-204ENST00000563396 ARAP2Q8WZ64 1704 aa17.84■□□□□ 0.45
SMPD3-204ENST00000563396 TMEM88BA6NKF7 163 aa17.84■□□□□ 0.45
SMPD3-204ENST00000563396 VIL1P09327 827 aaKnown RBP17.84■□□□□ 0.45
SMPD3-204ENST00000563396 CT47B1P0C2W7 299 aaPredicted RBP17.84■□□□□ 0.45
SMPD3-204ENST00000563396 CCT4P50991 539 aaKnown RBP17.84■□□□□ 0.45
SMPD3-204ENST00000563396 DOK7Q18PE1 504 aa17.84■□□□□ 0.45
SMPD3-204ENST00000563396 ALDH1L2Q3SY69 923 aa17.84■□□□□ 0.45
SMPD3-204ENST00000563396 MICALL2Q8IY33 904 aa17.84■□□□□ 0.45
SMPD3-204ENST00000563396 TRPM4Q8TD43 1214 aa17.84■□□□□ 0.45
SMPD3-204ENST00000563396 ZC3H15Q8WU90 426 aaKnown RBP17.84■□□□□ 0.45
SMPD3-204ENST00000563396 CDCA7LQ96GN5 454 aa17.84■□□□□ 0.45
SMPD3-204ENST00000563396 ZBTB12Q9Y330 459 aaPredicted RBP17.84■□□□□ 0.45
SMPD3-204ENST00000563396 KCNQ5Q9NR82 932 aa17.83■□□□□ 0.44
SMPD3-204ENST00000563396 CNOT7Q9UIV1 285 aaKnown RBP17.83■□□□□ 0.44
SMPD3-204ENST00000563396 LEMD3Q9Y2U8 911 aa17.83■□□□□ 0.44
SMPD3-204ENST00000563396 SHTN1A0MZ66 631 aa17.82■□□□□ 0.44
SMPD3-204ENST00000563396 ANKRD18BA2A2Z9 1011 aa17.82■□□□□ 0.44
SMPD3-204ENST00000563396 HIRAP54198 1017 aaPredicted RBP17.82■□□□□ 0.44
SMPD3-204ENST00000563396 EPHA10Q5JZY3 1008 aa17.82■□□□□ 0.44
SMPD3-204ENST00000563396 PODNQ7Z5L7 613 aa17.82■□□□□ 0.44
SMPD3-204ENST00000563396 ANKRD2Q9GZV1 360 aa17.82■□□□□ 0.44
SMPD3-204ENST00000563396 IRS2Q9Y4H2 1338 aa17.81■□□□□ 0.44
SMPD3-204ENST00000563396 WTIPA6NIX2 430 aaPredicted RBP17.81■□□□□ 0.44
SMPD3-204ENST00000563396 RASSF10A6NK89 507 aa17.81■□□□□ 0.44
SMPD3-204ENST00000563396 SLC4A10Q6U841 1118 aa17.81■□□□□ 0.44
SMPD3-204ENST00000563396 MPHOSPH8Q99549 860 aa17.81■□□□□ 0.44
SMPD3-204ENST00000563396 C9orf78Q9NZ63 289 aaPredicted RBP17.81■□□□□ 0.44
SMPD3-204ENST00000563396 ZNF804BA4D1E1 1349 aa17.8■□□□□ 0.44
SMPD3-204ENST00000563396 H7C1D1 291 aa17.8■□□□□ 0.44
SMPD3-204ENST00000563396 BRPF1P55201 1214 aaPredicted RBP17.8■□□□□ 0.44
SMPD3-204ENST00000563396 IFIT5Q13325 482 aaKnown RBP17.8■□□□□ 0.44
SMPD3-204ENST00000563396 RSBN1LQ6PCB5 846 aaPredicted RBP17.8■□□□□ 0.44
SMPD3-204ENST00000563396 LMBR1LQ6UX01 489 aa17.8■□□□□ 0.44
SMPD3-204ENST00000563396 AGBL3Q8NEM8 1001 aa17.8■□□□□ 0.44
SMPD3-204ENST00000563396 KAZALD1Q96I82 304 aa17.8■□□□□ 0.44
SMPD3-204ENST00000563396 ECM29Q5VYK3 1845 aa17.79■□□□□ 0.44
SMPD3-204ENST00000563396 ZNF280AP59817 542 aaPredicted RBP17.79■□□□□ 0.44
SMPD3-204ENST00000563396 CHRNDQ07001 517 aa17.79■□□□□ 0.44
SMPD3-204ENST00000563396 RABL6Q3YEC7 729 aaPredicted RBP17.79■□□□□ 0.44
SMPD3-204ENST00000563396 SUCLG2Q96I99 432 aa17.79■□□□□ 0.44
SMPD3-204ENST00000563396 GMLQ99445 158 aa17.79■□□□□ 0.44
SMPD3-204ENST00000563396 COA1Q9GZY4 146 aa17.79■□□□□ 0.44
SMPD3-204ENST00000563396 MKRN1Q9UHC7 482 aaKnown RBP17.79■□□□□ 0.44
SMPD3-204ENST00000563396 POLR2AP24928 1970 aaKnown RBP17.79■□□□□ 0.44
SMPD3-204ENST00000563396 G3V3G9 751 aa17.78■□□□□ 0.44
SMPD3-204ENST00000563396 TRAF5O00463 557 aa17.78■□□□□ 0.44
SMPD3-204ENST00000563396 EGFRP00533 1210 aa17.78■□□□□ 0.44
SMPD3-204ENST00000563396 NBPF7P0C2Y1 421 aaPredicted RBP17.78■□□□□ 0.44
SMPD3-204ENST00000563396 DCAF8Q5TAQ9 597 aa17.78■□□□□ 0.44
SMPD3-204ENST00000563396 C15orf52Q6ZUT6 534 aaKnown RBP17.78■□□□□ 0.44
SMPD3-204ENST00000563396 TXNRD3Q86VQ6 643 aa17.78■□□□□ 0.44
SMPD3-204ENST00000563396 USP17L3A6NCW0 530 aa17.77■□□□□ 0.44
SMPD3-204ENST00000563396 USP17L4A6NCW7 530 aa17.77■□□□□ 0.44
SMPD3-204ENST00000563396 KLRK1P26718 216 aa17.77■□□□□ 0.44
SMPD3-204ENST00000563396 FMR1Q06787 632 aaKnown RBP eCLIP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms