RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 XAGE2Q96GT9 111 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 RBM17Q96I25 401 aaKnown RBP6.53□□□□□ -1.36
VPS13C-209ENST00000560637 JAKMIP1Q96N16 626 aaKnown RBP6.53□□□□□ -1.36
VPS13C-209ENST00000560637 DCTPP1Q9H773 170 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 KIAA1210Q9ULL0 1709 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 PPIP5K2O43314 1243 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 RANBP6O60518 1105 aaKnown RBP6.52□□□□□ -1.37
VPS13C-209ENST00000560637 SCNN1DP51172 638 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 GTF2IP78347 998 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 OLFM4Q6UX06 510 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 SYNE3Q6ZMZ3 975 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 KIAA0825Q8IV33 1275 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 CCDC144CPQ8IYA2 1237 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 FAM184AQ8NB25 1140 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 NAPBQ9H115 298 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 MAP2P11137 1827 aaKnown RBP6.52□□□□□ -1.37
VPS13C-209ENST00000560637 ABCC4O15439 1325 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 GOLGA6L4A6NEF3 574 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 NUCB1Q02818 461 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 SLFNL1Q499Z3 407 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 TNNI3KQ59H18 835 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 CRACR2BQ8N4Y2 399 aaPredicted RBP6.52□□□□□ -1.37
VPS13C-209ENST00000560637 MAGEB6Q8N7X4 407 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 LRRC4BQ9NT99 713 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 GGA1Q9UJY5 639 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 FPGT-TNNI3KV9GXZ4 949 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 ERICH2A1L162 156 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 PCCAP05165 728 aaPredicted RBP6.52□□□□□ -1.37
VPS13C-209ENST00000560637 CHRNDQ07001 517 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 TCP10Q12799 353 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 MPNDQ8N594 471 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 NARFQ9UHQ1 456 aa6.52□□□□□ -1.37
VPS13C-209ENST00000560637 RAD17O75943 681 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 ZAP70P43403 619 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 AKAP17AQ02040 695 aaKnown RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 SIRT2Q8IXJ6 389 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 TMOD2Q9NZR1 351 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 SCAF8Q9UPN6 1271 aaKnown RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 RGPD8O14715 1765 aaPredicted RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 CPA1P15085 419 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 HIBADHP31937 336 aaKnown RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 PHKA1P46020 1223 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 EIF5P55010 431 aaKnown RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 HDAC1Q13547 482 aaPredicted RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 COL23A1Q86Y22 540 aaPredicted RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 OGFOD1Q8N543 542 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 NACAP1Q9BZK3 213 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 PDGFDQ9GZP0 370 aaPredicted RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 PAG1Q9NWQ8 432 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 CTDP1Q9Y5B0 961 aaPredicted RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 IFT172Q9UG01 1749 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 SRCAPQ6ZRS2 3230 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 KDM6AO15550 1401 aaPredicted RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 NALCNQ8IZF0 1738 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 H3BQV1 296 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 PRDM1O75626 825 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 SEC24BO95487 1268 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 TTC22Q5TAA0 569 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 IFFO2Q5TF58 517 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 NAA16Q6N069 864 aaPredicted RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 PLEKHM2Q8IWE5 1019 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 TTLL11Q8NHH1 800 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 DDX11Q96FC9 970 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 SEC62Q99442 399 aaKnown RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 MKNK2Q9HBH9 465 aa6.51□□□□□ -1.37
VPS13C-209ENST00000560637 SAP30BPQ9UHR5 308 aaKnown RBP6.51□□□□□ -1.37
VPS13C-209ENST00000560637 GOLGA6L22H0YM25 854 aa6.5□□□□□ -1.37
VPS13C-209ENST00000560637 CASTP20810 708 aaKnown RBP6.5□□□□□ -1.37
VPS13C-209ENST00000560637 PDIA6Q15084 440 aa6.5□□□□□ -1.37
VPS13C-209ENST00000560637 FAM227BQ96M60 508 aa6.5□□□□□ -1.37
VPS13C-209ENST00000560637 BACH2Q9BYV9 841 aa6.5□□□□□ -1.37
VPS13C-209ENST00000560637 INTS5Q6P9B9 1019 aaKnown RBP6.5□□□□□ -1.37
VPS13C-209ENST00000560637 CCDC125Q86Z20 511 aa6.5□□□□□ -1.37
VPS13C-209ENST00000560637 ITSN1Q15811 1721 aa6.5□□□□□ -1.37
VPS13C-209ENST00000560637 MARCH6O60337 910 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 HMGB2P26583 209 aaKnown RBP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 CEBPZQ03701 1054 aaKnown RBP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 NMIQ13287 307 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 PUM3Q15397 648 aaKnown RBP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 ZRSR1Q15695 479 aaKnown RBP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 SLC15A2Q16348 729 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 EAPPQ56P03 285 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 ZNF804AQ7Z570 1209 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 FLAD1Q8NFF5 587 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 ANTXR1Q9H6X2 564 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 AATFQ9NY61 560 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 FBXO3Q9UK99 471 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 ADCY9O60503 1353 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 EIF5BO60841 1220 aaKnown RBP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 PDE6BP35913 854 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 WDR78Q5VTH9 848 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 SMC5Q8IY18 1101 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 RASSF8Q8NHQ8 419 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 STX8Q9UNK0 236 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 SLC4A4Q9Y6R1 1079 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 CAMTA2O94983 1202 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 EIF6P56537 245 aaKnown RBP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 CCT2P78371 535 aaKnown RBP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 PTPN12Q05209 780 aaKnown RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms