RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TRPM4Q8TD43 1214 aa22.73■■□□□ 1.23
HDDC3-205ENST00000559898 ZNF521Q96K83 1311 aa22.73■■□□□ 1.23
HDDC3-205ENST00000559898 ECE2O60344 883 aa22.72■■□□□ 1.23
HDDC3-205ENST00000559898 GCKRQ14397 625 aa22.72■■□□□ 1.23
HDDC3-205ENST00000559898 TMEM88BA6NKF7 163 aa22.71■■□□□ 1.23
HDDC3-205ENST00000559898 UFL1O94874 794 aa22.71■■□□□ 1.23
HDDC3-205ENST00000559898 EGFRP00533 1210 aa22.71■■□□□ 1.23
HDDC3-205ENST00000559898 NEXNQ0ZGT2 675 aa22.71■■□□□ 1.23
HDDC3-205ENST00000559898 DLK2Q6UY11 383 aa22.71■■□□□ 1.23
HDDC3-205ENST00000559898 USP50Q70EL3 339 aaPredicted RBP22.71■■□□□ 1.23
HDDC3-205ENST00000559898 DNAAF4Q8WXU2 420 aa22.71■■□□□ 1.23
HDDC3-205ENST00000559898 CHMP4AQ9BY43 222 aa22.71■■□□□ 1.23
HDDC3-205ENST00000559898 ADARB2Q9NS39 739 aaKnown RBP22.71■■□□□ 1.23
HDDC3-205ENST00000559898 PODXL2Q9NZ53 605 aa22.71■■□□□ 1.23
HDDC3-205ENST00000559898 BCL2L13Q9BXK5 485 aa22.7■■□□□ 1.22
HDDC3-205ENST00000559898 CNTNAP1P78357 1384 aa22.7■■□□□ 1.22
HDDC3-205ENST00000559898 TRPM7Q96QT4 1865 aa22.7■■□□□ 1.22
HDDC3-205ENST00000559898 HSPA1AP0DMV8 641 aaKnown RBP22.69■■□□□ 1.22
HDDC3-205ENST00000559898 HSPA1BP0DMV9 641 aaKnown RBP22.69■■□□□ 1.22
HDDC3-205ENST00000559898 ANKRD18AQ8IVF6 992 aa22.69■■□□□ 1.22
HDDC3-205ENST00000559898 ANKIB1Q9P2G1 1089 aa22.69■■□□□ 1.22
HDDC3-205ENST00000559898 CNOT7Q9UIV1 285 aaKnown RBP22.69■■□□□ 1.22
HDDC3-205ENST00000559898 VEGFBP49765 207 aa22.68■■□□□ 1.22
HDDC3-205ENST00000559898 TNIP1Q15025 636 aa22.68■■□□□ 1.22
HDDC3-205ENST00000559898 COL13A1Q5TAT6 717 aaPredicted RBP22.68■■□□□ 1.22
HDDC3-205ENST00000559898 MICALL2Q8IY33 904 aa22.68■■□□□ 1.22
HDDC3-205ENST00000559898 ZNF646O15015 1829 aaPredicted RBP22.68■■□□□ 1.22
HDDC3-205ENST00000559898 POLR2AP24928 1970 aaKnown RBP22.67■■□□□ 1.22
HDDC3-205ENST00000559898 PSME4Q14997 1843 aa22.67■■□□□ 1.22
HDDC3-205ENST00000559898 FAM161AQ3B820 660 aa22.67■■□□□ 1.22
HDDC3-205ENST00000559898 CST9Q5W186 159 aa22.67■■□□□ 1.22
HDDC3-205ENST00000559898 SAMD7Q7Z3H4 446 aa22.67■■□□□ 1.22
HDDC3-205ENST00000559898 GLIS2Q9BZE0 524 aaPredicted RBP22.67■■□□□ 1.22
HDDC3-205ENST00000559898 GGA1Q9UJY5 639 aa22.67■■□□□ 1.22
HDDC3-205ENST00000559898 BEND3Q5T5X7 828 aa22.66■■□□□ 1.22
HDDC3-205ENST00000559898 LINS1Q8NG48 757 aa22.66■■□□□ 1.22
HDDC3-205ENST00000559898 EYA3Q99504 573 aa22.66■■□□□ 1.22
HDDC3-205ENST00000559898 MINPP1Q9UNW1 487 aa22.66■■□□□ 1.22
HDDC3-205ENST00000559898 HSP90B1P14625 803 aaKnown RBP22.65■■□□□ 1.22
HDDC3-205ENST00000559898 ZC3H12CQ9C0D7 883 aaKnown RBP22.65■■□□□ 1.22
HDDC3-205ENST00000559898 MYH16Q9H6N6 1097 aa22.65■■□□□ 1.22
HDDC3-205ENST00000559898 A0A1B0GUL6 1792 aa22.64■■□□□ 1.22
HDDC3-205ENST00000559898 TBC1D10BQ4KMP7 808 aaPredicted RBP22.64■■□□□ 1.21
HDDC3-205ENST00000559898 EPHA10Q5JZY3 1008 aa22.64■■□□□ 1.21
HDDC3-205ENST00000559898 IFFO2Q5TF58 517 aa22.64■■□□□ 1.21
HDDC3-205ENST00000559898 PLA2G12BQ9BX93 195 aa22.64■■□□□ 1.21
HDDC3-205ENST00000559898 XDHP47989 1333 aa22.63■■□□□ 1.21
HDDC3-205ENST00000559898 CSF1RP07333 972 aa22.63■■□□□ 1.21
HDDC3-205ENST00000559898 ITGA6P23229 1130 aa22.63■■□□□ 1.21
HDDC3-205ENST00000559898 KLRK1P26718 216 aa22.63■■□□□ 1.21
HDDC3-205ENST00000559898 FOXO4P98177 505 aa22.63■■□□□ 1.21
HDDC3-205ENST00000559898 TXNRD3Q86VQ6 643 aa22.63■■□□□ 1.21
HDDC3-205ENST00000559898 CDC5LQ99459 802 aaKnown RBP22.63■■□□□ 1.21
HDDC3-205ENST00000559898 BSDC1Q9NW68 430 aaPredicted RBP22.63■■□□□ 1.21
HDDC3-205ENST00000559898 PGAP2Q9UHJ9 254 aa22.63■■□□□ 1.21
HDDC3-205ENST00000559898 ASTN2O75129 1339 aaPredicted RBP22.62■■□□□ 1.21
HDDC3-205ENST00000559898 SNAP23O00161 211 aa22.62■■□□□ 1.21
HDDC3-205ENST00000559898 RBM26Q5T8P6 1007 aaKnown RBP22.62■■□□□ 1.21
HDDC3-205ENST00000559898 CDCA7LQ96GN5 454 aa22.62■■□□□ 1.21
HDDC3-205ENST00000559898 RASSF10A6NK89 507 aa22.61■■□□□ 1.21
HDDC3-205ENST00000559898 VIL1P09327 827 aaKnown RBP22.61■■□□□ 1.21
HDDC3-205ENST00000559898 MXD3Q9BW11 206 aa22.61■■□□□ 1.21
HDDC3-205ENST00000559898 ABT1Q9ULW3 272 aaKnown RBP22.61■■□□□ 1.21
HDDC3-205ENST00000559898 ATP2B4P23634 1241 aa22.6■■□□□ 1.21
HDDC3-205ENST00000559898 DEFB115Q30KQ5 88 aa22.6■■□□□ 1.21
HDDC3-205ENST00000559898 DPF2Q92785 391 aa22.6■■□□□ 1.21
HDDC3-205ENST00000559898 H7C1D1 291 aa22.59■■□□□ 1.21
HDDC3-205ENST00000559898 CCT4P50991 539 aaKnown RBP22.59■■□□□ 1.21
HDDC3-205ENST00000559898 USP48Q86UV5 1035 aa22.59■■□□□ 1.21
HDDC3-205ENST00000559898 FOXN1O15353 648 aa22.58■■□□□ 1.21
HDDC3-205ENST00000559898 CYP4F22Q6NT55 531 aa22.58■■□□□ 1.21
HDDC3-205ENST00000559898 SLC4A10Q6U841 1118 aa22.58■■□□□ 1.21
HDDC3-205ENST00000559898 MRPL50Q8N5N7 158 aaKnown RBP22.58■■□□□ 1.21
HDDC3-205ENST00000559898 G3V3G9 751 aa22.57■■□□□ 1.2
HDDC3-205ENST00000559898 CELF2O95319 508 aaKnown RBP22.57■■□□□ 1.2
HDDC3-205ENST00000559898 DCAF8Q5TAQ9 597 aa22.57■■□□□ 1.2
HDDC3-205ENST00000559898 HELBQ8NG08 1087 aaPredicted RBP22.57■■□□□ 1.2
HDDC3-205ENST00000559898 ZNF594Q96JF6 807 aaPredicted RBP22.57■■□□□ 1.2
HDDC3-205ENST00000559898 ZNF408Q9H9D4 720 aa22.57■■□□□ 1.2
HDDC3-205ENST00000559898 WDR33Q9C0J8 1336 aaKnown RBP22.57■■□□□ 1.2
HDDC3-205ENST00000559898 MED23Q9ULK4 1368 aa22.56■■□□□ 1.2
HDDC3-205ENST00000559898 ADM5C9JUS6 153 aa22.56■■□□□ 1.2
HDDC3-205ENST00000559898 IGHMBP2P38935 993 aaKnown RBP22.56■■□□□ 1.2
HDDC3-205ENST00000559898 SLFN5Q08AF3 891 aa22.56■■□□□ 1.2
HDDC3-205ENST00000559898 GRM1Q13255 1194 aa22.56■■□□□ 1.2
HDDC3-205ENST00000559898 GMLQ99445 158 aa22.56■■□□□ 1.2
HDDC3-205ENST00000559898 SCAF8Q9UPN6 1271 aaKnown RBP22.56■■□□□ 1.2
HDDC3-205ENST00000559898 TAF5LO75529 589 aa22.55■■□□□ 1.2
HDDC3-205ENST00000559898 RPS12P25398 132 aaKnown RBP22.55■■□□□ 1.2
HDDC3-205ENST00000559898 CHRNDQ07001 517 aa22.55■■□□□ 1.2
HDDC3-205ENST00000559898 RSBN1LQ6PCB5 846 aaPredicted RBP22.55■■□□□ 1.2
HDDC3-205ENST00000559898 LMBR1LQ6UX01 489 aa22.55■■□□□ 1.2
HDDC3-205ENST00000559898 KAZALD1Q96I82 304 aa22.55■■□□□ 1.2
HDDC3-205ENST00000559898 CHMP3Q9Y3E7 222 aa22.55■■□□□ 1.2
HDDC3-205ENST00000559898 TLL2Q9Y6L7 1015 aa22.55■■□□□ 1.2
HDDC3-205ENST00000559898 THSD7BQ9C0I4 1608 aa22.54■■□□□ 1.2
HDDC3-205ENST00000559898 GRM8O00222 908 aa22.54■■□□□ 1.2
HDDC3-205ENST00000559898 KIF4BQ2VIQ3 1234 aa22.54■■□□□ 1.2
HDDC3-205ENST00000559898 ZC3H15Q8WU90 426 aaKnown RBP22.54■■□□□ 1.2
HDDC3-205ENST00000559898 SSH1Q8WYL5 1049 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms