RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 RBM26Q5T8P6 1007 aaKnown RBP11.85□□□□□ -0.51
HDDC3-204ENST00000559834 KRT26Q7Z3Y9 468 aa11.85□□□□□ -0.51
HDDC3-204ENST00000559834 C2orf69Q8N8R5 385 aa11.85□□□□□ -0.51
HDDC3-204ENST00000559834 PODXL2Q9NZ53 605 aa11.85□□□□□ -0.51
HDDC3-204ENST00000559834 SHTN1A0MZ66 631 aa11.84□□□□□ -0.51
HDDC3-204ENST00000559834 APAF1O14727 1248 aa11.84□□□□□ -0.51
HDDC3-204ENST00000559834 PDE8AO60658 829 aa11.84□□□□□ -0.51
HDDC3-204ENST00000559834 PCCAP05165 728 aaPredicted RBP11.84□□□□□ -0.51
HDDC3-204ENST00000559834 VIL1P09327 827 aaKnown RBP11.84□□□□□ -0.51
HDDC3-204ENST00000559834 HUNKP57058 714 aa11.84□□□□□ -0.51
HDDC3-204ENST00000559834 TBC1D10BQ4KMP7 808 aaPredicted RBP11.84□□□□□ -0.51
HDDC3-204ENST00000559834 CCDC30Q5VVM6 783 aa11.84□□□□□ -0.51
HDDC3-204ENST00000559834 CCDC102AQ96A19 550 aa11.84□□□□□ -0.51
HDDC3-204ENST00000559834 MYD88Q99836 296 aa11.84□□□□□ -0.51
HDDC3-204ENST00000559834 PHAXQ9H814 394 aaKnown RBP11.84□□□□□ -0.51
HDDC3-204ENST00000559834 GGA1Q9UJY5 639 aa11.84□□□□□ -0.51
HDDC3-204ENST00000559834 CCDC85CA6NKD9 419 aa11.83□□□□□ -0.52
HDDC3-204ENST00000559834 UFL1O94874 794 aa11.83□□□□□ -0.52
HDDC3-204ENST00000559834 RGMBQ6NW40 437 aa11.83□□□□□ -0.52
HDDC3-204ENST00000559834 SULF1Q8IWU6 871 aa11.83□□□□□ -0.52
HDDC3-204ENST00000559834 METTL22Q9BUU2 404 aaPredicted RBP11.83□□□□□ -0.52
HDDC3-204ENST00000559834 PRKRIP1Q9H875 184 aaPredicted RBP11.83□□□□□ -0.52
HDDC3-204ENST00000559834 GBA2Q9HCG7 927 aaPredicted RBP11.83□□□□□ -0.52
HDDC3-204ENST00000559834 SEC31BQ9NQW1 1179 aa11.83□□□□□ -0.52
HDDC3-204ENST00000559834 KCNQ5Q9NR82 932 aa11.83□□□□□ -0.52
HDDC3-204ENST00000559834 CWC25Q9NXE8 425 aaPredicted RBP11.83□□□□□ -0.52
HDDC3-204ENST00000559834 TSKSQ9UJT2 592 aa11.83□□□□□ -0.52
HDDC3-204ENST00000559834 LAMB2P55268 1798 aa11.82□□□□□ -0.52
HDDC3-204ENST00000559834 KIF4BQ2VIQ3 1234 aa11.82□□□□□ -0.52
HDDC3-204ENST00000559834 ANKRD18AQ8IVF6 992 aa11.82□□□□□ -0.52
HDDC3-204ENST00000559834 AGBL3Q8NEM8 1001 aa11.82□□□□□ -0.52
HDDC3-204ENST00000559834 TAF1P21675 1872 aa11.81□□□□□ -0.52
HDDC3-204ENST00000559834 ATP2B4P23634 1241 aa11.81□□□□□ -0.52
HDDC3-204ENST00000559834 ZNF157P51786 506 aaPredicted RBP11.81□□□□□ -0.52
HDDC3-204ENST00000559834 C8orf58Q8NAV2 365 aa11.81□□□□□ -0.52
HDDC3-204ENST00000559834 CDC5LQ99459 802 aaKnown RBP11.81□□□□□ -0.52
HDDC3-204ENST00000559834 RTL9Q8NET4 1388 aa11.8□□□□□ -0.52
HDDC3-204ENST00000559834 EGFRP00533 1210 aa11.8□□□□□ -0.52
HDDC3-204ENST00000559834 NEXNQ0ZGT2 675 aa11.8□□□□□ -0.52
HDDC3-204ENST00000559834 RSBN1LQ6PCB5 846 aaPredicted RBP11.8□□□□□ -0.52
HDDC3-204ENST00000559834 KSR2Q6VAB6 950 aa11.8□□□□□ -0.52
HDDC3-204ENST00000559834 PODNQ7Z5L7 613 aa11.8□□□□□ -0.52
HDDC3-204ENST00000559834 REM2Q8IYK8 340 aaPredicted RBP11.8□□□□□ -0.52
HDDC3-204ENST00000559834 MAP3K2Q9Y2U5 619 aa11.8□□□□□ -0.52
HDDC3-204ENST00000559834 XDHP47989 1333 aa11.8□□□□□ -0.52
HDDC3-204ENST00000559834 DUOX1Q9NRD9 1551 aa11.79□□□□□ -0.52
HDDC3-204ENST00000559834 THSD7BQ9C0I4 1608 aa11.79□□□□□ -0.52
HDDC3-204ENST00000559834 ADM5C9JUS6 153 aa11.79□□□□□ -0.52
HDDC3-204ENST00000559834 USP17L8P0C7I0 530 aa11.79□□□□□ -0.52
HDDC3-204ENST00000559834 RGS19P49795 217 aa11.79□□□□□ -0.52
HDDC3-204ENST00000559834 ZNF280AP59817 542 aaPredicted RBP11.79□□□□□ -0.52
HDDC3-204ENST00000559834 MLLT1Q03111 559 aaPredicted RBP11.79□□□□□ -0.52
HDDC3-204ENST00000559834 SCARF1Q14162 830 aa11.79□□□□□ -0.52
HDDC3-204ENST00000559834 DLK2Q6UY11 383 aa11.79□□□□□ -0.52
HDDC3-204ENST00000559834 JARID2Q92833 1246 aaPredicted RBP11.79□□□□□ -0.52
HDDC3-204ENST00000559834 CCDC85AQ96PX6 553 aaPredicted RBP11.79□□□□□ -0.52
HDDC3-204ENST00000559834 STK31Q9BXU1 1019 aa11.79□□□□□ -0.52
HDDC3-204ENST00000559834 MCOLN1Q9GZU1 580 aa11.79□□□□□ -0.52
HDDC3-204ENST00000559834 GGA3Q9NZ52 723 aa11.79□□□□□ -0.52
HDDC3-204ENST00000559834 LRRC37AA6NMS7 1700 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 DDX60Q8IY21 1712 aaKnown RBP11.78□□□□□ -0.52
HDDC3-204ENST00000559834 PI4KAP2A4QPH2 592 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 USP17L3A6NCW0 530 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 USP17L4A6NCW7 530 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 FAM155AB1AL88 458 aaPredicted RBP11.78□□□□□ -0.52
HDDC3-204ENST00000559834 FKBP1BP68106 108 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 KIF23Q02241 960 aaPredicted RBP11.78□□□□□ -0.52
HDDC3-204ENST00000559834 DGKZQ13574 1117 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 FAM161AQ3B820 660 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 USP17L1Q7RTZ2 530 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 PI4KAP1Q8N8J0 262 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 ZIC5Q96T25 663 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 BSDC1Q9NW68 430 aaPredicted RBP11.78□□□□□ -0.52
HDDC3-204ENST00000559834 SAGE1Q9NXZ1 904 aa11.78□□□□□ -0.52
HDDC3-204ENST00000559834 CTSWP56202 376 aa11.77□□□□□ -0.53
HDDC3-204ENST00000559834 ANGEL2Q5VTE6 544 aaKnown RBP11.77□□□□□ -0.53
HDDC3-204ENST00000559834 OGFOD1Q8N543 542 aa11.77□□□□□ -0.53
HDDC3-204ENST00000559834 TTLL11Q8NHH1 800 aa11.77□□□□□ -0.53
HDDC3-204ENST00000559834 CDCA5Q96FF9 252 aa11.77□□□□□ -0.53
HDDC3-204ENST00000559834 MYOZ2Q9NPC6 264 aa11.77□□□□□ -0.53
HDDC3-204ENST00000559834 MMP14P50281 582 aa11.76□□□□□ -0.53
HDDC3-204ENST00000559834 TSPYL6Q8N831 410 aa11.76□□□□□ -0.53
HDDC3-204ENST00000559834 GMLQ99445 158 aa11.76□□□□□ -0.53
HDDC3-204ENST00000559834 RNF186Q9NXI6 227 aa11.76□□□□□ -0.53
HDDC3-204ENST00000559834 MINPP1Q9UNW1 487 aa11.76□□□□□ -0.53
HDDC3-204ENST00000559834 PITPNM2Q9BZ72 1349 aa11.76□□□□□ -0.53
HDDC3-204ENST00000559834 POLR2AP24928 1970 aaKnown RBP11.76□□□□□ -0.53
HDDC3-204ENST00000559834 TRPA1O75762 1119 aa11.75□□□□□ -0.53
HDDC3-204ENST00000559834 IGKV5-2P06315 115 aa11.75□□□□□ -0.53
HDDC3-204ENST00000559834 SLC10A3P09131 477 aa11.75□□□□□ -0.53
HDDC3-204ENST00000559834 IGHMBP2P38935 993 aaKnown RBP11.75□□□□□ -0.53
HDDC3-204ENST00000559834 CCDC27Q2M243 656 aa11.75□□□□□ -0.53
HDDC3-204ENST00000559834 CSRNP1Q96S65 589 aa11.75□□□□□ -0.53
HDDC3-204ENST00000559834 COA1Q9GZY4 146 aa11.75□□□□□ -0.53
HDDC3-204ENST00000559834 LEMD3Q9Y2U8 911 aa11.75□□□□□ -0.53
HDDC3-204ENST00000559834 ZNF609O15014 1411 aa11.75□□□□□ -0.53
HDDC3-204ENST00000559834 CASP8AP2Q9UKL3 1982 aa11.74□□□□□ -0.53
HDDC3-204ENST00000559834 H7C1W4 665 aa11.74□□□□□ -0.53
HDDC3-204ENST00000559834 SLC4A2P04920 1241 aa11.74□□□□□ -0.53
HDDC3-204ENST00000559834 NF2P35240 595 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms