RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 CTSWP56202 376 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 BEND3Q5T5X7 828 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 CC2D2BQ6DHV5 1058 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 CHMP3Q9Y3E7 222 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 CDHR2Q9BYE9 1310 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 SNED1Q8TER0 1413 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 H7C1W4 665 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 RIMBP2O15034 1052 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 RPS8P62241 208 aaKnown RBP12.23□□□□□ -0.45
SPG11-214ENST00000558989 CACNB1Q02641 598 aaPredicted RBP12.23□□□□□ -0.45
SPG11-214ENST00000558989 JDP2Q8WYK2 163 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 PSMD1Q99460 953 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 GREM2Q9H772 168 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 GJA3Q9Y6H8 435 aa12.23□□□□□ -0.45
SPG11-214ENST00000558989 LRRC37AA6NMS7 1700 aa12.22□□□□□ -0.45
SPG11-214ENST00000558989 C6orf229H3BNL8 230 aa12.22□□□□□ -0.45
SPG11-214ENST00000558989 RBM25P49756 843 aaKnown RBP12.22□□□□□ -0.45
SPG11-214ENST00000558989 GPSM2P81274 684 aa12.22□□□□□ -0.45
SPG11-214ENST00000558989 TRMT2AQ8IZ69 625 aaKnown RBP12.22□□□□□ -0.45
SPG11-214ENST00000558989 WDR70Q9NW82 654 aa12.22□□□□□ -0.45
SPG11-214ENST00000558989 C9orf78Q9NZ63 289 aaPredicted RBP12.22□□□□□ -0.45
SPG11-214ENST00000558989 ANKRD18AQ8IVF6 992 aa12.21□□□□□ -0.45
SPG11-214ENST00000558989 TTLL11Q8NHH1 800 aa12.21□□□□□ -0.45
SPG11-214ENST00000558989 SRCIN1Q9C0H9 1055 aa12.21□□□□□ -0.45
SPG11-214ENST00000558989 FAM161AQ3B820 660 aa12.21□□□□□ -0.46
SPG11-214ENST00000558989 NIM1KQ8IY84 436 aa12.21□□□□□ -0.46
SPG11-214ENST00000558989 ANKIB1Q9P2G1 1089 aa12.21□□□□□ -0.46
SPG11-214ENST00000558989 ZC3H4Q9UPT8 1303 aaKnown RBP12.2□□□□□ -0.46
SPG11-214ENST00000558989 DUOX1Q9NRD9 1551 aa12.2□□□□□ -0.46
SPG11-214ENST00000558989 MFAP1P55081 439 aaKnown RBP12.2□□□□□ -0.46
SPG11-214ENST00000558989 CASP7P55210 303 aa12.2□□□□□ -0.46
SPG11-214ENST00000558989 EIF6P56537 245 aaKnown RBP12.2□□□□□ -0.46
SPG11-214ENST00000558989 NOB1Q9ULX3 412 aaKnown RBP12.2□□□□□ -0.46
SPG11-214ENST00000558989 WDR90Q96KV7 1748 aa12.2□□□□□ -0.46
SPG11-214ENST00000558989 VEGFAP15692 232 aaPredicted RBP12.19□□□□□ -0.46
SPG11-214ENST00000558989 EPHA10Q5JZY3 1008 aa12.19□□□□□ -0.46
SPG11-214ENST00000558989 SUPT20HQ8NEM7 779 aa12.19□□□□□ -0.46
SPG11-214ENST00000558989 POLLQ9UGP5 575 aa12.19□□□□□ -0.46
SPG11-214ENST00000558989 POTECB2RU33 542 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 GRM8O00222 908 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 ITGA6P23229 1130 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 DOK7Q18PE1 504 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 ALDH1L2Q3SY69 923 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 GRIPAP1Q4V328 841 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 CDC5LQ99459 802 aaKnown RBP12.18□□□□□ -0.46
SPG11-214ENST00000558989 DBNDD1Q9H9R9 158 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 SCN4AP35499 1836 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 WTIPA6NIX2 430 aaPredicted RBP12.18□□□□□ -0.46
SPG11-214ENST00000558989 FZD9O00144 591 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 TOMM70O94826 608 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 UFL1O94874 794 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 NBPF7P0C2Y1 421 aaPredicted RBP12.18□□□□□ -0.46
SPG11-214ENST00000558989 RARSP54136 660 aaKnown RBP12.18□□□□□ -0.46
SPG11-214ENST00000558989 WASHC4Q2M389 1173 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 EAPPQ56P03 285 aaPredicted RBP12.18□□□□□ -0.46
SPG11-214ENST00000558989 LMBR1LQ6UX01 489 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 TMC4Q7Z404 712 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 FRAT1Q92837 279 aaPredicted RBP12.18□□□□□ -0.46
SPG11-214ENST00000558989 LTBP1Q14766 1721 aa12.18□□□□□ -0.46
SPG11-214ENST00000558989 PTPRCP08575 1304 aa12.17□□□□□ -0.46
SPG11-214ENST00000558989 BCAR3O75815 825 aa12.17□□□□□ -0.46
SPG11-214ENST00000558989 ALDH1L1O75891 902 aa12.17□□□□□ -0.46
SPG11-214ENST00000558989 RAD17O75943 681 aa12.17□□□□□ -0.46
SPG11-214ENST00000558989 POTEIP0CG38 1075 aa12.17□□□□□ -0.46
SPG11-214ENST00000558989 POTEJP0CG39 1038 aa12.17□□□□□ -0.46
SPG11-214ENST00000558989 IGHMBP2P38935 993 aaKnown RBP12.17□□□□□ -0.46
SPG11-214ENST00000558989 FOXO4P98177 505 aa12.17□□□□□ -0.46
SPG11-214ENST00000558989 TBC1D16Q8TBP0 767 aa12.17□□□□□ -0.46
SPG11-214ENST00000558989 SUCLG2Q96I99 432 aa12.17□□□□□ -0.46
SPG11-214ENST00000558989 ZNF594Q96JF6 807 aaPredicted RBP12.17□□□□□ -0.46
SPG11-214ENST00000558989 SCN9AQ15858 1988 aa12.16□□□□□ -0.46
SPG11-214ENST00000558989 ANKRD18BA2A2Z9 1011 aa12.16□□□□□ -0.46
SPG11-214ENST00000558989 G3V3G9 751 aa12.16□□□□□ -0.46
SPG11-214ENST00000558989 DCAF8Q5TAQ9 597 aa12.16□□□□□ -0.46
SPG11-214ENST00000558989 MPHOSPH8Q99549 860 aa12.16□□□□□ -0.46
SPG11-214ENST00000558989 PLA2G12BQ9BX93 195 aa12.16□□□□□ -0.46
SPG11-214ENST00000558989 RTFDC1Q9BY42 306 aaPredicted RBP12.16□□□□□ -0.46
SPG11-214ENST00000558989 GGA1Q9UJY5 639 aa12.16□□□□□ -0.46
SPG11-214ENST00000558989 TNNQ9UQP3 1299 aa12.16□□□□□ -0.46
SPG11-214ENST00000558989 KIAA2012Q0VF49 1180 aa12.16□□□□□ -0.46
SPG11-214ENST00000558989 TAF7LQ5H9L4 462 aa12.16□□□□□ -0.46
SPG11-214ENST00000558989 A0A1B0GUL6 1792 aa12.15□□□□□ -0.46
SPG11-214ENST00000558989 PLIN1O60240 522 aa12.15□□□□□ -0.46
SPG11-214ENST00000558989 CSF1RP07333 972 aa12.15□□□□□ -0.46
SPG11-214ENST00000558989 CT47B1P0C2W7 299 aaPredicted RBP12.15□□□□□ -0.46
SPG11-214ENST00000558989 IFIT5Q13325 482 aaKnown RBP12.15□□□□□ -0.46
SPG11-214ENST00000558989 FOXD4L5Q5VV16 416 aaPredicted RBP12.15□□□□□ -0.46
SPG11-214ENST00000558989 HELBQ8NG08 1087 aaPredicted RBP12.15□□□□□ -0.46
SPG11-214ENST00000558989 FOXD4L4Q8WXT5 416 aaPredicted RBP12.15□□□□□ -0.46
SPG11-214ENST00000558989 CLUAP1Q96AJ1 413 aa12.15□□□□□ -0.46
SPG11-214ENST00000558989 KCNQ5Q9NR82 932 aa12.15□□□□□ -0.46
SPG11-214ENST00000558989 ZNRF3Q9ULT6 936 aa12.15□□□□□ -0.46
SPG11-214ENST00000558989 MINPP1Q9UNW1 487 aa12.15□□□□□ -0.46
SPG11-214ENST00000558989 CLEC11AQ9Y240 323 aa12.15□□□□□ -0.46
SPG11-214ENST00000558989 YDJCA8MPS7 323 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 CXCL9Q07325 125 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 GPC2Q8N158 579 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 RBM46Q8TBY0 533 aaKnown RBP12.14□□□□□ -0.47
SPG11-214ENST00000558989 EYA3Q99504 573 aa12.14□□□□□ -0.47
SPG11-214ENST00000558989 ZC3H12CQ9C0D7 883 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms