RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ANKRD2Q9GZV1 360 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 NMRK2Q9NPI5 230 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 HACL1Q9UJ83 578 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 GGA1Q9UJY5 639 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 ZNRF3Q9ULT6 936 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 XDHP47989 1333 aa10.91□□□□□ -0.66
USP3-208ENST00000558285 ANKRD18BA2A2Z9 1011 aa10.91□□□□□ -0.66
USP3-208ENST00000558285 FZD9O00144 591 aa10.91□□□□□ -0.66
USP3-208ENST00000558285 GRM8O00222 908 aa10.91□□□□□ -0.66
USP3-208ENST00000558285 KIAA2012Q0VF49 1180 aa10.91□□□□□ -0.66
USP3-208ENST00000558285 IFIT5Q13325 482 aaKnown RBP10.91□□□□□ -0.66
USP3-208ENST00000558285 L3MBTL3Q96JM7 780 aaPredicted RBP10.91□□□□□ -0.66
USP3-208ENST00000558285 DAXXQ9UER7 740 aaPredicted RBP10.91□□□□□ -0.66
USP3-208ENST00000558285 ATP2B4P23634 1241 aa10.9□□□□□ -0.66
USP3-208ENST00000558285 KCNJ4P48050 445 aa10.9□□□□□ -0.66
USP3-208ENST00000558285 CCT4P50991 539 aaKnown RBP10.9□□□□□ -0.66
USP3-208ENST00000558285 APLP1P51693 650 aa10.9□□□□□ -0.66
USP3-208ENST00000558285 CCDC57Q2TAC2 916 aa10.9□□□□□ -0.66
USP3-208ENST00000558285 BSDC1Q9NW68 430 aaPredicted RBP10.9□□□□□ -0.66
USP3-208ENST00000558285 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.9□□□□□ -0.66
USP3-208ENST00000558285 CHMP3Q9Y3E7 222 aa10.9□□□□□ -0.66
USP3-208ENST00000558285 TIAM2Q8IVF5 1701 aa10.9□□□□□ -0.66
USP3-208ENST00000558285 SBF1O95248 1867 aa10.9□□□□□ -0.67
USP3-208ENST00000558285 CACNA1SQ13698 1873 aa10.9□□□□□ -0.67
USP3-208ENST00000558285 BEND3Q5T5X7 828 aa10.89□□□□□ -0.67
USP3-208ENST00000558285 TTLL11Q8NHH1 800 aa10.89□□□□□ -0.67
USP3-208ENST00000558285 CELF1Q92879 486 aaKnown RBP10.89□□□□□ -0.67
USP3-208ENST00000558285 BCL2L13Q9BXK5 485 aa10.89□□□□□ -0.67
USP3-208ENST00000558285 PODXL2Q9NZ53 605 aa10.89□□□□□ -0.67
USP3-208ENST00000558285 GJA3Q9Y6H8 435 aa10.89□□□□□ -0.67
USP3-208ENST00000558285 LAMB2P55268 1798 aa10.89□□□□□ -0.67
USP3-208ENST00000558285 POTEMA6NI47 508 aa10.89□□□□□ -0.67
USP3-208ENST00000558285 HSPA6P17066 643 aa10.89□□□□□ -0.67
USP3-208ENST00000558285 AOC3Q16853 763 aa10.89□□□□□ -0.67
USP3-208ENST00000558285 CIAPIN1Q6FI81 312 aa10.89□□□□□ -0.67
USP3-208ENST00000558285 MRPL50Q8N5N7 158 aaKnown RBP10.89□□□□□ -0.67
USP3-208ENST00000558285 F6X3S4 739 aa10.88□□□□□ -0.67
USP3-208ENST00000558285 DDNO94850 711 aaPredicted RBP10.88□□□□□ -0.67
USP3-208ENST00000558285 UFL1O94874 794 aa10.88□□□□□ -0.67
USP3-208ENST00000558285 OLFM4Q6UX06 510 aa10.88□□□□□ -0.67
USP3-208ENST00000558285 LDHDQ86WU2 507 aa10.88□□□□□ -0.67
USP3-208ENST00000558285 TRMT2AQ8IZ69 625 aaKnown RBP10.88□□□□□ -0.67
USP3-208ENST00000558285 SSH1Q8WYL5 1049 aa10.88□□□□□ -0.67
USP3-208ENST00000558285 ARHGAP45Q92619 1136 aa10.88□□□□□ -0.67
USP3-208ENST00000558285 LEMD3Q9Y2U8 911 aa10.88□□□□□ -0.67
USP3-208ENST00000558285 DICER1Q9UPY3 1922 aaKnown RBP10.88□□□□□ -0.67
USP3-208ENST00000558285 ITGA6P23229 1130 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 RPS12P25398 132 aaKnown RBP10.87□□□□□ -0.67
USP3-208ENST00000558285 BRPF1P55201 1214 aaPredicted RBP10.87□□□□□ -0.67
USP3-208ENST00000558285 CCDC85AQ96PX6 553 aaPredicted RBP10.87□□□□□ -0.67
USP3-208ENST00000558285 CLEC11AQ9Y240 323 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 DDX60Q8IY21 1712 aaKnown RBP10.87□□□□□ -0.67
USP3-208ENST00000558285 WDR90Q96KV7 1748 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 H7C1D1 291 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 CSF1RP07333 972 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 EPHX2P34913 555 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 MMP14P50281 582 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 PRELPP51888 382 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 GPSM2P81274 684 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 CHADLQ6NUI6 762 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 TBC1D16Q8TBP0 767 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 CDCA7LQ96GN5 454 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 GREM2Q9H772 168 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 SEC31BQ9NQW1 1179 aa10.87□□□□□ -0.67
USP3-208ENST00000558285 ZBED9Q6R2W3 1325 aa10.86□□□□□ -0.67
USP3-208ENST00000558285 MS4A1P11836 297 aa10.86□□□□□ -0.67
USP3-208ENST00000558285 EAPPQ56P03 285 aaPredicted RBP10.86□□□□□ -0.67
USP3-208ENST00000558285 USP50Q70EL3 339 aaPredicted RBP10.86□□□□□ -0.67
USP3-208ENST00000558285 PODNQ7Z5L7 613 aa10.86□□□□□ -0.67
USP3-208ENST00000558285 JARID2Q92833 1246 aaPredicted RBP10.86□□□□□ -0.67
USP3-208ENST00000558285 YTHDC1Q96MU7 727 aaKnown RBP10.86□□□□□ -0.67
USP3-208ENST00000558285 CNNM1Q9NRU3 951 aa10.86□□□□□ -0.67
USP3-208ENST00000558285 ZNF541Q9H0D2 1346 aa10.85□□□□□ -0.67
USP3-208ENST00000558285 SNED1Q8TER0 1413 aa10.85□□□□□ -0.67
USP3-208ENST00000558285 FAM161AQ3B820 660 aa10.85□□□□□ -0.67
USP3-208ENST00000558285 TAF1DQ9H5J8 278 aaPredicted RBP10.85□□□□□ -0.67
USP3-208ENST00000558285 ADARB2Q9NS39 739 aaKnown RBP10.85□□□□□ -0.67
USP3-208ENST00000558285 PCDH10Q9P2E7 1040 aa10.85□□□□□ -0.67
USP3-208ENST00000558285 RIMBP2O15034 1052 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 ECE2O60344 883 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 UBTFL1P0CB47 393 aaPredicted RBP10.84□□□□□ -0.67
USP3-208ENST00000558285 LMBR1LQ6UX01 489 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 LDHAL6AQ6ZMR3 332 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 MED23Q9ULK4 1368 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 CCDC88AQ3V6T2 1871 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 MYO3BQ8WXR4 1341 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 SCN4AP35499 1836 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 GNAI3P08754 354 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 POTEIP0CG38 1075 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 RARSP54136 660 aaKnown RBP10.84□□□□□ -0.67
USP3-208ENST00000558285 CASP7P55210 303 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 CXCL9Q07325 125 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 IFNLR1Q8IU57 520 aaPredicted RBP10.84□□□□□ -0.67
USP3-208ENST00000558285 DPF2Q92785 391 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 COA1Q9GZY4 146 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 NOB1Q9ULX3 412 aaKnown RBP10.84□□□□□ -0.67
USP3-208ENST00000558285 MINPP1Q9UNW1 487 aa10.84□□□□□ -0.67
USP3-208ENST00000558285 LRRC37AA6NMS7 1700 aa10.83□□□□□ -0.68
USP3-208ENST00000558285 UTYO14607 1347 aa10.83□□□□□ -0.68
USP3-208ENST00000558285 SPDYE4A6NLX3 237 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms