RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 PCCAP05165 728 aaPredicted RBP20.63■□□□□ 0.89
SCFD1-224ENST00000557713 HSP90B1P14625 803 aaKnown RBP20.63■□□□□ 0.89
SCFD1-224ENST00000557713 USP48Q86UV5 1035 aa20.63■□□□□ 0.89
SCFD1-224ENST00000557713 BEGAINQ9BUH8 593 aa20.63■□□□□ 0.89
SCFD1-224ENST00000557713 RPS12P25398 132 aaKnown RBP20.62■□□□□ 0.89
SCFD1-224ENST00000557713 ZNF408Q9H9D4 720 aa20.62■□□□□ 0.89
SCFD1-224ENST00000557713 PDE8AO60658 829 aa20.61■□□□□ 0.89
SCFD1-224ENST00000557713 EGFRP00533 1210 aa20.61■□□□□ 0.89
SCFD1-224ENST00000557713 TBC1D10BQ4KMP7 808 aaPredicted RBP20.61■□□□□ 0.89
SCFD1-224ENST00000557713 DLK2Q6UY11 383 aa20.61■□□□□ 0.89
SCFD1-224ENST00000557713 METTL22Q9BUU2 404 aaPredicted RBP20.61■□□□□ 0.89
SCFD1-224ENST00000557713 ZC3H12CQ9C0D7 883 aaKnown RBP20.61■□□□□ 0.89
SCFD1-224ENST00000557713 VIL1P09327 827 aaKnown RBP20.6■□□□□ 0.89
SCFD1-224ENST00000557713 CCDC152Q4G0S7 254 aa20.6■□□□□ 0.89
SCFD1-224ENST00000557713 CCDC30Q5VVM6 783 aa20.6■□□□□ 0.89
SCFD1-224ENST00000557713 JARID2Q92833 1246 aaPredicted RBP20.6■□□□□ 0.89
SCFD1-224ENST00000557713 CHMP4AQ9BY43 222 aa20.6■□□□□ 0.89
SCFD1-224ENST00000557713 CWC25Q9NXE8 425 aaPredicted RBP20.6■□□□□ 0.89
SCFD1-224ENST00000557713 ABHD8Q96I13 439 aa20.59■□□□□ 0.89
SCFD1-224ENST00000557713 UFL1O94874 794 aa20.58■□□□□ 0.89
SCFD1-224ENST00000557713 DDX58O95786 925 aaKnown RBP20.58■□□□□ 0.89
SCFD1-224ENST00000557713 BRPF1P55201 1214 aaPredicted RBP20.58■□□□□ 0.89
SCFD1-224ENST00000557713 RBM26Q5T8P6 1007 aaKnown RBP20.58■□□□□ 0.89
SCFD1-224ENST00000557713 TSPYL6Q8N831 410 aa20.58■□□□□ 0.89
SCFD1-224ENST00000557713 ANKIB1Q9P2G1 1089 aa20.58■□□□□ 0.89
SCFD1-224ENST00000557713 GGA1Q9UJY5 639 aa20.58■□□□□ 0.89
SCFD1-224ENST00000557713 KRT26Q7Z3Y9 468 aa20.57■□□□□ 0.88
SCFD1-224ENST00000557713 TSKSQ9UJT2 592 aa20.57■□□□□ 0.88
SCFD1-224ENST00000557713 MAP3K2Q9Y2U5 619 aa20.57■□□□□ 0.88
SCFD1-224ENST00000557713 CA12O43570 354 aa20.56■□□□□ 0.88
SCFD1-224ENST00000557713 HUNKP57058 714 aa20.56■□□□□ 0.88
SCFD1-224ENST00000557713 KSR2Q6VAB6 950 aa20.56■□□□□ 0.88
SCFD1-224ENST00000557713 DCPSQ96C86 337 aaKnown RBP20.56■□□□□ 0.88
SCFD1-224ENST00000557713 CCDC85AQ96PX6 553 aaPredicted RBP20.56■□□□□ 0.88
SCFD1-224ENST00000557713 IGKV5-2P06315 115 aa20.55■□□□□ 0.88
SCFD1-224ENST00000557713 ZIC5Q96T25 663 aa20.55■□□□□ 0.88
SCFD1-224ENST00000557713 SCN9AQ15858 1988 aa20.55■□□□□ 0.88
SCFD1-224ENST00000557713 PI4KAP2A4QPH2 592 aa20.54■□□□□ 0.88
SCFD1-224ENST00000557713 ADM5C9JUS6 153 aa20.54■□□□□ 0.88
SCFD1-224ENST00000557713 G3V3G9 751 aa20.54■□□□□ 0.88
SCFD1-224ENST00000557713 NOGQ13253 232 aa20.54■□□□□ 0.88
SCFD1-224ENST00000557713 KIF4BQ2VIQ3 1234 aa20.54■□□□□ 0.88
SCFD1-224ENST00000557713 DCAF8Q5TAQ9 597 aa20.54■□□□□ 0.88
SCFD1-224ENST00000557713 ANKRD18AQ8IVF6 992 aa20.54■□□□□ 0.88
SCFD1-224ENST00000557713 PI4KAP1Q8N8J0 262 aa20.54■□□□□ 0.88
SCFD1-224ENST00000557713 XDHP47989 1333 aa20.53■□□□□ 0.88
SCFD1-224ENST00000557713 ZNF280AP59817 542 aaPredicted RBP20.53■□□□□ 0.88
SCFD1-224ENST00000557713 CCDC27Q2M243 656 aa20.53■□□□□ 0.88
SCFD1-224ENST00000557713 CCDC184Q52MB2 194 aa20.53■□□□□ 0.88
SCFD1-224ENST00000557713 RSBN1LQ6PCB5 846 aaPredicted RBP20.53■□□□□ 0.88
SCFD1-224ENST00000557713 AGBL3Q8NEM8 1001 aa20.53■□□□□ 0.88
SCFD1-224ENST00000557713 TSR2Q969E8 191 aaKnown RBP20.53■□□□□ 0.88
SCFD1-224ENST00000557713 GBA2Q9HCG7 927 aaPredicted RBP20.53■□□□□ 0.88
SCFD1-224ENST00000557713 ZNF609O15014 1411 aa20.53■□□□□ 0.88
SCFD1-224ENST00000557713 FAM155AB1AL88 458 aaPredicted RBP20.52■□□□□ 0.88
SCFD1-224ENST00000557713 ATP2B4P23634 1241 aa20.52■□□□□ 0.88
SCFD1-224ENST00000557713 CTSWP56202 376 aa20.52■□□□□ 0.88
SCFD1-224ENST00000557713 RGMBQ6NW40 437 aa20.52■□□□□ 0.88
SCFD1-224ENST00000557713 C2orf69Q8N8R5 385 aa20.52■□□□□ 0.88
SCFD1-224ENST00000557713 TTLL11Q8NHH1 800 aa20.52■□□□□ 0.88
SCFD1-224ENST00000557713 GMLQ99445 158 aa20.52■□□□□ 0.88
SCFD1-224ENST00000557713 POLR2AP24928 1970 aaKnown RBP20.52■□□□□ 0.87
SCFD1-224ENST00000557713 ASTN2O75129 1339 aaPredicted RBP20.52■□□□□ 0.87
SCFD1-224ENST00000557713 WTIPA6NIX2 430 aaPredicted RBP20.51■□□□□ 0.87
SCFD1-224ENST00000557713 G2E3Q7L622 706 aa20.5■□□□□ 0.87
SCFD1-224ENST00000557713 PODNQ7Z5L7 613 aa20.5■□□□□ 0.87
SCFD1-224ENST00000557713 SULF1Q8IWU6 871 aa20.5■□□□□ 0.87
SCFD1-224ENST00000557713 WWC1Q8IX03 1113 aa20.5■□□□□ 0.87
SCFD1-224ENST00000557713 CDC5LQ99459 802 aaKnown RBP20.5■□□□□ 0.87
SCFD1-224ENST00000557713 STK31Q9BXU1 1019 aa20.5■□□□□ 0.87
SCFD1-224ENST00000557713 BSDC1Q9NW68 430 aaPredicted RBP20.5■□□□□ 0.87
SCFD1-224ENST00000557713 GGA3Q9NZ52 723 aa20.5■□□□□ 0.87
SCFD1-224ENST00000557713 MINPP1Q9UNW1 487 aa20.5■□□□□ 0.87
SCFD1-224ENST00000557713 NEURL1BA8MQ27 555 aa20.49■□□□□ 0.87
SCFD1-224ENST00000557713 H7C1W4 665 aa20.49■□□□□ 0.87
SCFD1-224ENST00000557713 NEXNQ0ZGT2 675 aa20.49■□□□□ 0.87
SCFD1-224ENST00000557713 SCARF1Q14162 830 aa20.49■□□□□ 0.87
SCFD1-224ENST00000557713 CWF19L2Q2TBE0 894 aaKnown RBP20.49■□□□□ 0.87
SCFD1-224ENST00000557713 TWISTNBQ3B726 338 aaPredicted RBP20.49■□□□□ 0.87
SCFD1-224ENST00000557713 CCDC102AQ96A19 550 aa20.49■□□□□ 0.87
SCFD1-224ENST00000557713 GREM2Q9H772 168 aa20.49■□□□□ 0.87
SCFD1-224ENST00000557713 USP17L3A6NCW0 530 aa20.48■□□□□ 0.87
SCFD1-224ENST00000557713 USP17L4A6NCW7 530 aa20.48■□□□□ 0.87
SCFD1-224ENST00000557713 SLC4A2P04920 1241 aa20.48■□□□□ 0.87
SCFD1-224ENST00000557713 USP17L1Q7RTZ2 530 aa20.48■□□□□ 0.87
SCFD1-224ENST00000557713 CDCA5Q96FF9 252 aa20.48■□□□□ 0.87
SCFD1-224ENST00000557713 PSME4Q14997 1843 aa20.48■□□□□ 0.87
SCFD1-224ENST00000557713 USP17L8P0C7I0 530 aa20.47■□□□□ 0.87
SCFD1-224ENST00000557713 ZNF157P51786 506 aaPredicted RBP20.47■□□□□ 0.87
SCFD1-224ENST00000557713 NCBP3Q53F19 620 aaKnown RBP20.47■□□□□ 0.87
SCFD1-224ENST00000557713 ANGEL2Q5VTE6 544 aaKnown RBP20.47■□□□□ 0.87
SCFD1-224ENST00000557713 MYOZ2Q9NPC6 264 aa20.47■□□□□ 0.87
SCFD1-224ENST00000557713 MED23Q9ULK4 1368 aa20.46■□□□□ 0.87
SCFD1-224ENST00000557713 KIF23Q02241 960 aaPredicted RBP20.46■□□□□ 0.87
SCFD1-224ENST00000557713 MCOLN1Q9GZU1 580 aa20.46■□□□□ 0.87
SCFD1-224ENST00000557713 IL16Q14005 1332 aa20.46■□□□□ 0.87
SCFD1-224ENST00000557713 CCDC85CA6NKD9 419 aa20.45■□□□□ 0.86
SCFD1-224ENST00000557713 CCT4P50991 539 aaKnown RBP20.45■□□□□ 0.86
SCFD1-224ENST00000557713 UBE3BQ7Z3V4 1068 aa20.45■□□□□ 0.86
SCFD1-224ENST00000557713 SLC10A3P09131 477 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms