RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 JDP2Q8WYK2 163 aa17.07■□□□□ 0.32
SHMT2-234ENST00000557703 GGA1Q9UJY5 639 aa17.07■□□□□ 0.32
SHMT2-234ENST00000557703 TNNQ9UQP3 1299 aa17.07■□□□□ 0.32
SHMT2-234ENST00000557703 SBF1O95248 1867 aa17.07■□□□□ 0.32
SHMT2-234ENST00000557703 PLIN1O60240 522 aa17.06■□□□□ 0.32
SHMT2-234ENST00000557703 CIAO1O76071 339 aa17.06■□□□□ 0.32
SHMT2-234ENST00000557703 IARSP41252 1262 aaKnown RBP17.06■□□□□ 0.32
SHMT2-234ENST00000557703 C9orf131Q5VYM1 1079 aa17.06■□□□□ 0.32
SHMT2-234ENST00000557703 COPRSQ9NQ92 184 aa17.06■□□□□ 0.32
SHMT2-234ENST00000557703 CNNM1Q9NRU3 951 aa17.06■□□□□ 0.32
SHMT2-234ENST00000557703 ATP8B2P98198 1209 aa17.05■□□□□ 0.32
SHMT2-234ENST00000557703 KIAA2012Q0VF49 1180 aa17.05■□□□□ 0.32
SHMT2-234ENST00000557703 RPAP2Q8IXW5 612 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-234ENST00000557703 ZBTB40Q9NUA8 1239 aa17.05■□□□□ 0.32
SHMT2-234ENST00000557703 RNF181Q9P0P0 153 aa17.05■□□□□ 0.32
SHMT2-234ENST00000557703 TAF1P21675 1872 aa17.05■□□□□ 0.32
SHMT2-234ENST00000557703 DICER1Q9UPY3 1922 aaKnown RBP17.04■□□□□ 0.32
SHMT2-234ENST00000557703 SRGAP3O43295 1099 aa17.04■□□□□ 0.32
SHMT2-234ENST00000557703 RFX5P48382 616 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-234ENST00000557703 GPSM2P81274 684 aa17.04■□□□□ 0.32
SHMT2-234ENST00000557703 RASSF7Q02833 373 aa17.04■□□□□ 0.32
SHMT2-234ENST00000557703 PTPN12Q05209 780 aaKnown RBP17.04■□□□□ 0.32
SHMT2-234ENST00000557703 WASHC4Q2M389 1173 aa17.04■□□□□ 0.32
SHMT2-234ENST00000557703 DPY19L2Q6NUT2 758 aa17.04■□□□□ 0.32
SHMT2-234ENST00000557703 TBC1D16Q8TBP0 767 aa17.04■□□□□ 0.32
SHMT2-234ENST00000557703 ZC3H12CQ9C0D7 883 aaKnown RBP17.04■□□□□ 0.32
SHMT2-234ENST00000557703 COG6Q9Y2V7 657 aa17.04■□□□□ 0.32
SHMT2-234ENST00000557703 RIPOR2Q9Y4F9 1068 aa17.04■□□□□ 0.32
SHMT2-234ENST00000557703 C6orf229H3BNL8 230 aa17.03■□□□□ 0.32
SHMT2-234ENST00000557703 YY1P25490 414 aa17.03■□□□□ 0.32
SHMT2-234ENST00000557703 CHRNDQ07001 517 aa17.03■□□□□ 0.32
SHMT2-234ENST00000557703 OLFM4Q6UX06 510 aa17.03■□□□□ 0.32
SHMT2-234ENST00000557703 C15orf52Q6ZUT6 534 aaKnown RBP17.03■□□□□ 0.32
SHMT2-234ENST00000557703 LARGE2Q8N3Y3 721 aa17.03■□□□□ 0.32
SHMT2-234ENST00000557703 FZD9O00144 591 aa17.02■□□□□ 0.32
SHMT2-234ENST00000557703 EYA2O00167 538 aa17.02■□□□□ 0.32
SHMT2-234ENST00000557703 PPIP5K2O43314 1243 aa17.02■□□□□ 0.32
SHMT2-234ENST00000557703 HMMRO75330 724 aa17.02■□□□□ 0.32
SHMT2-234ENST00000557703 IL15P40933 162 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-234ENST00000557703 UBE4AQ14139 1066 aa17.02■□□□□ 0.32
SHMT2-234ENST00000557703 SSH3Q8TE77 659 aa17.02■□□□□ 0.32
SHMT2-234ENST00000557703 ZNF277Q9NRM2 450 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-234ENST00000557703 POLLQ9UGP5 575 aa17.02■□□□□ 0.32
SHMT2-234ENST00000557703 UFL1O94874 794 aa17.01■□□□□ 0.31
SHMT2-234ENST00000557703 POLA2Q14181 598 aa17.01■□□□□ 0.31
SHMT2-234ENST00000557703 NIM1KQ8IY84 436 aa17.01■□□□□ 0.31
SHMT2-234ENST00000557703 MED23Q9ULK4 1368 aa17.01■□□□□ 0.31
SHMT2-234ENST00000557703 ZNF804BA4D1E1 1349 aa17■□□□□ 0.31
SHMT2-234ENST00000557703 PDE8BO95263 885 aa17■□□□□ 0.31
SHMT2-234ENST00000557703 KCNJ4P48050 445 aa17■□□□□ 0.31
SHMT2-234ENST00000557703 LTBP1Q14766 1721 aa17■□□□□ 0.31
SHMT2-234ENST00000557703 HSP90AB4PQ58FF6 505 aa17■□□□□ 0.31
SHMT2-234ENST00000557703 PODNQ7Z5L7 613 aa17■□□□□ 0.31
SHMT2-234ENST00000557703 ZNF594Q96JF6 807 aaPredicted RBP17■□□□□ 0.31
SHMT2-234ENST00000557703 ZNRF3Q9ULT6 936 aa17■□□□□ 0.31
SHMT2-234ENST00000557703 KDM2BQ8NHM5 1336 aa16.99■□□□□ 0.31
SHMT2-234ENST00000557703 CCDC88AQ3V6T2 1871 aa16.99■□□□□ 0.31
SHMT2-234ENST00000557703 EIF6P56537 245 aaKnown RBP16.99■□□□□ 0.31
SHMT2-234ENST00000557703 COA1Q9GZY4 146 aa16.99■□□□□ 0.31
SHMT2-234ENST00000557703 CEP126Q9P2H0 1117 aa16.99■□□□□ 0.31
SHMT2-234ENST00000557703 GLTPD2A6NH11 291 aa16.98■□□□□ 0.31
SHMT2-234ENST00000557703 PRELPP51888 382 aa16.98■□□□□ 0.31
SHMT2-234ENST00000557703 G3BP1Q13283 466 aaKnown RBP eCLIP16.98■□□□□ 0.318e-8■■■□□ 16.6
SHMT2-234ENST00000557703 AOC3Q16853 763 aa16.98■□□□□ 0.31
SHMT2-234ENST00000557703 METTL24Q5JXM2 366 aa16.98■□□□□ 0.31
SHMT2-234ENST00000557703 C20orf194Q5TEA3 1177 aa16.98■□□□□ 0.31
SHMT2-234ENST00000557703 CEP85Q6P2H3 762 aa16.98■□□□□ 0.31
SHMT2-234ENST00000557703 NOP58Q9Y2X3 529 aaKnown RBP16.98■□□□□ 0.31
SHMT2-234ENST00000557703 G3V3G9 751 aa16.97■□□□□ 0.31
SHMT2-234ENST00000557703 ZBTB22O15209 634 aa16.97■□□□□ 0.31
SHMT2-234ENST00000557703 MMP14P50281 582 aa16.97■□□□□ 0.31
SHMT2-234ENST00000557703 TNIP1Q15025 636 aa16.97■□□□□ 0.31
SHMT2-234ENST00000557703 PUM3Q15397 648 aaKnown RBP16.97■□□□□ 0.31
SHMT2-234ENST00000557703 DCAF8Q5TAQ9 597 aa16.97■□□□□ 0.31
SHMT2-234ENST00000557703 ATG9AQ7Z3C6 839 aa16.97■□□□□ 0.31
SHMT2-234ENST00000557703 VGLL2Q8N8G2 317 aa16.97■□□□□ 0.31
SHMT2-234ENST00000557703 PUS3Q9BZE2 481 aaKnown RBP16.97■□□□□ 0.31
SHMT2-234ENST00000557703 AKAP2Q9Y2D5 859 aa16.97■□□□□ 0.31
SHMT2-234ENST00000557703 DUOX1Q9NRD9 1551 aa16.97■□□□□ 0.31
SHMT2-234ENST00000557703 COL4A1P02462 1669 aa16.97■□□□□ 0.31
SHMT2-234ENST00000557703 PNMA6EA0A0J9YXQ4 647 aa16.96■□□□□ 0.31
SHMT2-234ENST00000557703 IFIT1P09914 478 aaKnown RBP16.96■□□□□ 0.31
SHMT2-234ENST00000557703 LRRC24Q50LG9 513 aa16.96■□□□□ 0.31
SHMT2-234ENST00000557703 ERC1Q8IUD2 1116 aa16.96■□□□□ 0.31
SHMT2-234ENST00000557703 GPC2Q8N158 579 aa16.96■□□□□ 0.31
SHMT2-234ENST00000557703 LPIN2Q92539 896 aa16.96■□□□□ 0.31
SHMT2-234ENST00000557703 ZNF804AQ7Z570 1209 aa16.95■□□□□ 0.3
SHMT2-234ENST00000557703 GPR108Q9NPR9 543 aa16.95■□□□□ 0.3
SHMT2-234ENST00000557703 SUPT16HQ9Y5B9 1047 aaKnown RBP16.95■□□□□ 0.3
SHMT2-234ENST00000557703 TAF5LO75529 589 aa16.94■□□□□ 0.3
SHMT2-234ENST00000557703 CAVIN4Q5BKX8 364 aa16.94■□□□□ 0.3
SHMT2-234ENST00000557703 KLHDC4Q8TBB5 520 aa16.94■□□□□ 0.3
SHMT2-234ENST00000557703 L3MBTL3Q96JM7 780 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-234ENST00000557703 SPEF2Q9C093 1822 aa16.93■□□□□ 0.3
SHMT2-234ENST00000557703 SURF6O75683 361 aaKnown RBP16.93■□□□□ 0.3
SHMT2-234ENST00000557703 SLC5A1P13866 664 aa16.93■□□□□ 0.3
SHMT2-234ENST00000557703 FGFR2P21802 821 aa16.93■□□□□ 0.3
SHMT2-234ENST00000557703 RPS12P25398 132 aaKnown RBP16.93■□□□□ 0.3
SHMT2-234ENST00000557703 CIAPIN1Q6FI81 312 aa16.93■□□□□ 0.3
SHMT2-234ENST00000557703 HELBQ8NG08 1087 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms