RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.11■□□□□ 0.65
SHMT2-231ENST00000557433 FPGT-TNNI3KV9GXZ4 949 aa19.11■□□□□ 0.65
SHMT2-231ENST00000557433 SH3TC1Q8TE82 1336 aa19.11■□□□□ 0.65
SHMT2-231ENST00000557433 JAK2O60674 1132 aa19.1■□□□□ 0.65
SHMT2-231ENST00000557433 CACTINQ8WUQ7 758 aaKnown RBP19.1■□□□□ 0.65
SHMT2-231ENST00000557433 HAUS7Q99871 368 aa19.1■□□□□ 0.65
SHMT2-231ENST00000557433 NRBP1Q9UHY1 535 aa19.1■□□□□ 0.65
SHMT2-231ENST00000557433 TAF6LQ9Y6J9 622 aa19.1■□□□□ 0.65
SHMT2-231ENST00000557433 LRRC59Q96AG4 307 aaKnown RBP19.1■□□□□ 0.65
SHMT2-231ENST00000557433 NAT10Q9H0A0 1025 aaKnown RBP19.1■□□□□ 0.65
SHMT2-231ENST00000557433 SIL1Q9H173 461 aa19.1■□□□□ 0.65
SHMT2-231ENST00000557433 PRDM10Q9NQV6 1147 aa19.1■□□□□ 0.65
SHMT2-231ENST00000557433 GSDMDP57764 484 aa19.09■□□□□ 0.65
SHMT2-231ENST00000557433 RABL6Q3YEC7 729 aaPredicted RBP19.09■□□□□ 0.65
SHMT2-231ENST00000557433 CEP135Q66GS9 1140 aa19.09■□□□□ 0.65
SHMT2-231ENST00000557433 DHX32Q7L7V1 743 aaKnown RBP19.09■□□□□ 0.65
SHMT2-231ENST00000557433 AGXT2Q9BYV1 514 aa19.09■□□□□ 0.65
SHMT2-231ENST00000557433 PLEKHG2Q9H7P9 1386 aa19.09■□□□□ 0.65
SHMT2-231ENST00000557433 FAM177BA6PVY3 158 aa19.08■□□□□ 0.65
SHMT2-231ENST00000557433 KINO60870 393 aaKnown RBP19.08■□□□□ 0.65
SHMT2-231ENST00000557433 ADD1P35611 737 aaKnown RBP19.08■□□□□ 0.65
SHMT2-231ENST00000557433 COL9A3Q14050 684 aaPredicted RBP19.08■□□□□ 0.65
SHMT2-231ENST00000557433 CCAR1Q8IX12 1150 aaKnown RBP19.08■□□□□ 0.65
SHMT2-231ENST00000557433 DSCC1Q9BVC3 393 aa19.08■□□□□ 0.65
SHMT2-231ENST00000557433 HELLSQ9NRZ9 838 aa19.08■□□□□ 0.65
SHMT2-231ENST00000557433 DBNLQ9UJU6 430 aaKnown RBP19.08■□□□□ 0.65
SHMT2-231ENST00000557433 MYH15Q9Y2K3 1946 aa19.08■□□□□ 0.64
SHMT2-231ENST00000557433 ZNF609O15014 1411 aa19.08■□□□□ 0.64
SHMT2-231ENST00000557433 PALLDQ8WX93 1383 aa19.08■□□□□ 0.64
SHMT2-231ENST00000557433 BECN2A8MW95 431 aa19.08■□□□□ 0.64
SHMT2-231ENST00000557433 DTNBO60941 627 aa19.08■□□□□ 0.64
SHMT2-231ENST00000557433 CYP21A2P08686 494 aa19.08■□□□□ 0.64
SHMT2-231ENST00000557433 RFX5P48382 616 aaPredicted RBP19.08■□□□□ 0.64
SHMT2-231ENST00000557433 FAM160A1Q05DH4 1040 aa19.08■□□□□ 0.64
SHMT2-231ENST00000557433 SCRN1Q12765 414 aa19.08■□□□□ 0.64
SHMT2-231ENST00000557433 CEP57L1Q8IYX8 460 aa19.08■□□□□ 0.64
SHMT2-231ENST00000557433 FGD1P98174 961 aa19.07■□□□□ 0.64
SHMT2-231ENST00000557433 AIMP1Q12904 312 aaKnown RBP19.07■□□□□ 0.64
SHMT2-231ENST00000557433 NSUN7Q8NE18 718 aaKnown RBP19.07■□□□□ 0.64
SHMT2-231ENST00000557433 ANKRD24Q8TF21 1146 aa19.07■□□□□ 0.64
SHMT2-231ENST00000557433 IMPACTQ9P2X3 320 aa19.07■□□□□ 0.64
SHMT2-231ENST00000557433 GCP02774 474 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 TUBB4AP04350 444 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 GABPB1Q06547 395 aaPredicted RBP19.06■□□□□ 0.64
SHMT2-231ENST00000557433 KBTBD3Q8NAB2 608 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 CTNNA3Q9UI47 895 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 U2AF2P26368 475 aaKnown RBP eCLIP19.06■□□□□ 0.644e-8■■□□□ 14.1
SHMT2-231ENST00000557433 PTPN12Q05209 780 aaKnown RBP19.06■□□□□ 0.64
SHMT2-231ENST00000557433 PTPN14Q15678 1187 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 CCDC144BQ3MJ40 725 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 ZNF790Q6PG37 636 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 NYAP1Q6ZVC0 841 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 CCDC144CPQ8IYA2 1237 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 FBXL16Q8N461 479 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 RGS22Q8NE09 1264 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 ENGASEQ8NFI3 743 aa19.06■□□□□ 0.64
SHMT2-231ENST00000557433 FER1L4A9Z1Z3 1794 aa19.05■□□□□ 0.64
SHMT2-231ENST00000557433 PRAMEF22A3QJZ6 481 aa19.05■□□□□ 0.64
SHMT2-231ENST00000557433 ZNF274Q96GC6 653 aaPredicted RBP19.05■□□□□ 0.64
SHMT2-231ENST00000557433 GPR108Q9NPR9 543 aa19.05■□□□□ 0.64
SHMT2-231ENST00000557433 A0A1W2PQ27 194 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 A0A1W2PQ64 194 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 A0A1W2PQD8 194 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 EXOSC10Q01780 885 aaKnown RBP19.04■□□□□ 0.64
SHMT2-231ENST00000557433 TFCP2Q12800 502 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 SNW1Q13573 536 aaKnown RBP19.04■□□□□ 0.64
SHMT2-231ENST00000557433 C11orf57Q6ZUT1 292 aaPredicted RBP19.04■□□□□ 0.64
SHMT2-231ENST00000557433 XAGE3Q8WTP9 111 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 MYD88Q99836 296 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 BPIFA3Q9BQP9 254 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 ABCC6O95255 1503 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 SALL1Q9NSC2 1324 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 PTPDC1A2A3K4 754 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 SKILP12757 684 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 KCNJ6P48051 423 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 SLFNL1Q499Z3 407 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 EPHA10Q5JZY3 1008 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 ANKRD13DQ6ZTN6 518 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 DDX11Q96FC9 970 aa19.04■□□□□ 0.64
SHMT2-231ENST00000557433 DDX41Q9UJV9 622 aaKnown RBP19.04■□□□□ 0.64
SHMT2-231ENST00000557433 OSBPL5Q9H0X9 879 aaPredicted RBP19.03■□□□□ 0.64
SHMT2-231ENST00000557433 SLC52A2Q9HAB3 445 aa19.03■□□□□ 0.64
SHMT2-231ENST00000557433 MORC2Q9Y6X9 1032 aaPredicted RBP19.03■□□□□ 0.64
SHMT2-231ENST00000557433 ESCO1Q5FWF5 840 aa19.02■□□□□ 0.64
SHMT2-231ENST00000557433 COPS6Q7L5N1 327 aa19.02■□□□□ 0.64
SHMT2-231ENST00000557433 DHX40Q8IX18 779 aaKnown RBP19.02■□□□□ 0.64
SHMT2-231ENST00000557433 ZNF397Q8NF99 534 aaPredicted RBP19.02■□□□□ 0.64
SHMT2-231ENST00000557433 KLHDC4Q8TBB5 520 aa19.02■□□□□ 0.64
SHMT2-231ENST00000557433 ERO1AQ96HE7 468 aa19.02■□□□□ 0.64
SHMT2-231ENST00000557433 TMEM94Q12767 1356 aa19.02■□□□□ 0.64
SHMT2-231ENST00000557433 CCDC69A6NI79 296 aa19.02■□□□□ 0.63
SHMT2-231ENST00000557433 TAF3Q5VWG9 929 aa19.02■□□□□ 0.63
SHMT2-231ENST00000557433 KIF18AQ8NI77 898 aa19.02■□□□□ 0.63
SHMT2-231ENST00000557433 EDC3Q96F86 508 aaKnown RBP19.02■□□□□ 0.63
SHMT2-231ENST00000557433 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.02■□□□□ 0.63
SHMT2-231ENST00000557433 RTEL1Q9NZ71 1219 aa19.02■□□□□ 0.63
SHMT2-231ENST00000557433 C5P01031 1676 aa19.01■□□□□ 0.63
SHMT2-231ENST00000557433 SPDYE4A6NLX3 237 aa19.01■□□□□ 0.63
SHMT2-231ENST00000557433 NRDCO43847 1150 aa19.01■□□□□ 0.63
SHMT2-231ENST00000557433 FAM193AP78312 1265 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms