RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RLBP1P12271 317 aa17.03■□□□□ 0.32
SHMT2-228ENST00000557302 LARGE2Q8N3Y3 721 aa17.03■□□□□ 0.32
SHMT2-228ENST00000557302 JDP2Q8WYK2 163 aa17.03■□□□□ 0.32
SHMT2-228ENST00000557302 LRRFIP2Q9Y608 721 aaKnown RBP17.03■□□□□ 0.32
SHMT2-228ENST00000557302 UFL1O94874 794 aa17.02■□□□□ 0.32
SHMT2-228ENST00000557302 AOC3Q16853 763 aa17.02■□□□□ 0.32
SHMT2-228ENST00000557302 ITPRIPQ8IWB1 547 aa17.02■□□□□ 0.32
SHMT2-228ENST00000557302 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-228ENST00000557302 TBC1D16Q8TBP0 767 aa17.02■□□□□ 0.32
SHMT2-228ENST00000557302 ZNF526Q8TF50 670 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-228ENST00000557302 ZNF594Q96JF6 807 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-228ENST00000557302 POLLQ9UGP5 575 aa17.02■□□□□ 0.32
SHMT2-228ENST00000557302 GGA1Q9UJY5 639 aa17.02■□□□□ 0.32
SHMT2-228ENST00000557302 MINPP1Q9UNW1 487 aa17.02■□□□□ 0.32
SHMT2-228ENST00000557302 C1QTNF8P60827 252 aa17.01■□□□□ 0.31
SHMT2-228ENST00000557302 KIAA2012Q0VF49 1180 aa17.01■□□□□ 0.31
SHMT2-228ENST00000557302 NIM1KQ8IY84 436 aa17.01■□□□□ 0.31
SHMT2-228ENST00000557302 PANK1Q8TE04 598 aa17.01■□□□□ 0.31
SHMT2-228ENST00000557302 EYA3Q99504 573 aa17.01■□□□□ 0.31
SHMT2-228ENST00000557302 ANKRD2Q9GZV1 360 aa17.01■□□□□ 0.31
SHMT2-228ENST00000557302 DUOX1Q9NRD9 1551 aa17.01■□□□□ 0.31
SHMT2-228ENST00000557302 TIAM2Q8IVF5 1701 aa17.01■□□□□ 0.31
SHMT2-228ENST00000557302 CCDC88AQ3V6T2 1871 aa17.01■□□□□ 0.31
SHMT2-228ENST00000557302 PLIN1O60240 522 aa17■□□□□ 0.31
SHMT2-228ENST00000557302 ATP2B4P23634 1241 aa17■□□□□ 0.31
SHMT2-228ENST00000557302 WASHC4Q2M389 1173 aa17■□□□□ 0.31
SHMT2-228ENST00000557302 LDHAL6AQ6ZMR3 332 aa17■□□□□ 0.31
SHMT2-228ENST00000557302 GPBP1L1Q9HC44 474 aaPredicted RBP17■□□□□ 0.31
SHMT2-228ENST00000557302 CNNM1Q9NRU3 951 aa17■□□□□ 0.31
SHMT2-228ENST00000557302 DICER1Q9UPY3 1922 aaKnown RBP17■□□□□ 0.31
SHMT2-228ENST00000557302 KDM2BQ8NHM5 1336 aa16.99■□□□□ 0.31
SHMT2-228ENST00000557302 GNAI2P04899 355 aa16.99■□□□□ 0.31
SHMT2-228ENST00000557302 CHRNDQ07001 517 aa16.99■□□□□ 0.31
SHMT2-228ENST00000557302 DPY19L2Q6NUT2 758 aa16.99■□□□□ 0.31
SHMT2-228ENST00000557302 LTBP1Q14766 1721 aa16.99■□□□□ 0.31
SHMT2-228ENST00000557302 SPEF2Q9C093 1822 aa16.98■□□□□ 0.31
SHMT2-228ENST00000557302 GLTPD2A6NH11 291 aa16.98■□□□□ 0.31
SHMT2-228ENST00000557302 FZD9O00144 591 aa16.98■□□□□ 0.31
SHMT2-228ENST00000557302 RIMBP2O15034 1052 aa16.98■□□□□ 0.31
SHMT2-228ENST00000557302 GPR101Q96P66 508 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-228ENST00000557302 ZC3H12CQ9C0D7 883 aaKnown RBP16.98■□□□□ 0.31
SHMT2-228ENST00000557302 COL4A5P29400 1685 aa16.97■□□□□ 0.31
SHMT2-228ENST00000557302 KCNJ4P48050 445 aa16.97■□□□□ 0.31
SHMT2-228ENST00000557302 EIF6P56537 245 aaKnown RBP16.97■□□□□ 0.31
SHMT2-228ENST00000557302 LEMD3Q9Y2U8 911 aa16.97■□□□□ 0.31
SHMT2-228ENST00000557302 ZNF541Q9H0D2 1346 aa16.96■□□□□ 0.31
SHMT2-228ENST00000557302 ZBTB7BO15156 539 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-228ENST00000557302 RFX5P48382 616 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-228ENST00000557302 PDE3AQ14432 1141 aa16.96■□□□□ 0.31
SHMT2-228ENST00000557302 KLHDC4Q8TBB5 520 aa16.96■□□□□ 0.31
SHMT2-228ENST00000557302 PUS3Q9BZE2 481 aaKnown RBP16.96■□□□□ 0.31
SHMT2-228ENST00000557302 ZNRF3Q9ULT6 936 aa16.96■□□□□ 0.31
SHMT2-228ENST00000557302 ZNF804BA4D1E1 1349 aa16.96■□□□□ 0.3
SHMT2-228ENST00000557302 TAF5LO75529 589 aa16.95■□□□□ 0.3
SHMT2-228ENST00000557302 MTX1Q13505 466 aa16.95■□□□□ 0.3
SHMT2-228ENST00000557302 MVPQ14764 893 aaKnown RBP16.95■□□□□ 0.3
SHMT2-228ENST00000557302 HELBQ8NG08 1087 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-228ENST00000557302 COG6Q9Y2V7 657 aa16.95■□□□□ 0.3
SHMT2-228ENST00000557302 MROH5Q6ZUA9 1318 aa16.95■□□□□ 0.3
SHMT2-228ENST00000557302 MED23Q9ULK4 1368 aa16.94■□□□□ 0.3
SHMT2-228ENST00000557302 G3V3G9 751 aa16.94■□□□□ 0.3
SHMT2-228ENST00000557302 SRGAP3O43295 1099 aa16.94■□□□□ 0.3
SHMT2-228ENST00000557302 DDNO94850 711 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-228ENST00000557302 PTPN12Q05209 780 aaKnown RBP16.94■□□□□ 0.3
SHMT2-228ENST00000557302 DOK7Q18PE1 504 aa16.94■□□□□ 0.3
SHMT2-228ENST00000557302 LRRC24Q50LG9 513 aa16.94■□□□□ 0.3
SHMT2-228ENST00000557302 DCAF8Q5TAQ9 597 aa16.94■□□□□ 0.3
SHMT2-228ENST00000557302 DBNDD1Q9H9R9 158 aa16.94■□□□□ 0.3
SHMT2-228ENST00000557302 NMRK2Q9NPI5 230 aa16.94■□□□□ 0.3
SHMT2-228ENST00000557302 DDX19BQ9UMR2 479 aa16.94■□□□□ 0.3
SHMT2-228ENST00000557302 RIPOR2Q9Y4F9 1068 aa16.94■□□□□ 0.3
SHMT2-228ENST00000557302 WTIPA6NIX2 430 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-228ENST00000557302 EYA2O00167 538 aa16.93■□□□□ 0.3
SHMT2-228ENST00000557302 ECE2O60344 883 aa16.93■□□□□ 0.3
SHMT2-228ENST00000557302 METTL24Q5JXM2 366 aa16.93■□□□□ 0.3
SHMT2-228ENST00000557302 C20orf194Q5TEA3 1177 aa16.93■□□□□ 0.3
SHMT2-228ENST00000557302 GPC2Q8N158 579 aa16.93■□□□□ 0.3
SHMT2-228ENST00000557302 C1orf115Q9H7X2 142 aa16.93■□□□□ 0.3
SHMT2-228ENST00000557302 RRP1P56182 461 aaKnown RBP16.92■□□□□ 0.3
SHMT2-228ENST00000557302 SIL1Q9H173 461 aa16.92■□□□□ 0.3
SHMT2-228ENST00000557302 CHMP4BQ9H444 224 aaKnown RBP16.92■□□□□ 0.3
SHMT2-228ENST00000557302 RRAGCQ9HB90 399 aa16.92■□□□□ 0.3
SHMT2-228ENST00000557302 COPRSQ9NQ92 184 aa16.92■□□□□ 0.3
SHMT2-228ENST00000557302 FBXO3Q9UK99 471 aa16.92■□□□□ 0.3
SHMT2-228ENST00000557302 GJA3Q9Y6H8 435 aa16.92■□□□□ 0.3
SHMT2-228ENST00000557302 YDJCA8MPS7 323 aa16.91■□□□□ 0.3
SHMT2-228ENST00000557302 SNAP23O00161 211 aa16.91■□□□□ 0.3
SHMT2-228ENST00000557302 RAD17O75943 681 aa16.91■□□□□ 0.3
SHMT2-228ENST00000557302 CXCL9Q07325 125 aa16.91■□□□□ 0.3
SHMT2-228ENST00000557302 TNIP1Q15025 636 aa16.91■□□□□ 0.3
SHMT2-228ENST00000557302 CIAPIN1Q6FI81 312 aa16.91■□□□□ 0.3
SHMT2-228ENST00000557302 L3MBTL3Q96JM7 780 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-228ENST00000557302 PA2G4Q9UQ80 394 aaKnown RBP16.91■□□□□ 0.3
SHMT2-228ENST00000557302 CIAO1O76071 339 aa16.9■□□□□ 0.3
SHMT2-228ENST00000557302 VEGFAP15692 232 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-228ENST00000557302 KLRK1P26718 216 aa16.9■□□□□ 0.3
SHMT2-228ENST00000557302 UBE4AQ14139 1066 aa16.9■□□□□ 0.3
SHMT2-228ENST00000557302 TXNRD3Q86VQ6 643 aa16.9■□□□□ 0.3
SHMT2-228ENST00000557302 PNMA6EA0A0J9YXQ4 647 aa16.89■□□□□ 0.29
SHMT2-228ENST00000557302 IQCA1LA6NCM1 817 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms