RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TTC41P	Q6P2S7	1318 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	JAK2	O60674	1132 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	HSPA4	P34932	840 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	METAP2	P50579	478 aa	Known RBP eCLIP	5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	SLC4A8	Q2Y0W8	1093 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	MICALL1	Q8N3F8	863 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	AIDA	Q96BJ3	306 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	TET3	O43151	1660 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	MYOM2	P54296	1465 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	VIRMA	Q69YN4	1812 aa	Known RBP	5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	KLF18	A0A0U1RQI7	1052 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	ZNF213	O14771	459 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	EVC	P57679	992 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	GABPB1	Q06547	395 aa	Predicted RBP	5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	NCBP3	Q53F19	620 aa	Known RBP	5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	CCDC178	Q5BJE1	867 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	SIRT2	Q8IXJ6	389 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	SNRK	Q9NRH2	765 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	MAP3K5	Q99683	1374 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	LONRF3	Q496Y0	759 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	ZNF569	Q5MCW4	686 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	NEK11	Q8NG66	645 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	CCDC61	Q9Y6R9	512 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	NLRP1	Q9C000	1473 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	GLI2	P10070	1586 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	CAPN2	P17655	700 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	MCMDC2	Q4G0Z9	681 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	HYPK	Q9NX55	129 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005	CTNND2	Q9UQB3	1225 aa		5.74	□□□□□ -1.49
SYNE2-223	ENST00000557005		A0A087WWV3	80 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	MAP9	Q49MG5	647 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	CERS3	Q8IU89	383 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	IPO4	Q8TEX9	1081 aa	Known RBP	5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	NCOA5	Q9HCD5	579 aa	Known RBP	5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	ORC3	Q9UBD5	711 aa	Predicted RBP	5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	RNF17	Q9BXT8	1623 aa	Known RBP	5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	FAM135B	Q49AJ0	1406 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	PHACTR2	O75167	634 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	YEATS4	O95619	227 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	GTF2E1	P29083	439 aa	Predicted RBP	5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	STIM1	Q13586	685 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	SPECC1	Q5M775	1068 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	UNC5CL	Q8IV45	518 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	LRRC8A	Q8IWT6	810 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	SMARCC1	Q92922	1105 aa	Predicted RBP	5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	PPP1R13B	Q96KQ4	1090 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	CARD6	Q9BX69	1037 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	TPCN1	Q9ULQ1	816 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	ATP2C2	O75185	946 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	KIF20A	O95235	890 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	LARGE1	O95461	756 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	ASXL2	Q76L83	1435 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	NBPF11	Q86T75	865 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	DRC1	Q96MC2	740 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	RABEP2	Q9H5N1	569 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	CTAGE9	A4FU28	777 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	IVL	P07476	585 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	MICU3	Q86XE3	530 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	KIF2C	Q99661	725 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	ALG1	Q9BT22	464 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	GOPC	Q9HD26	462 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	ARFGAP3	Q9NP61	516 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	SEPT11	Q9NVA2	429 aa	Known RBP	5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	AOX1	Q06278	1338 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	MCM3	P25205	808 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	PNOC	Q13519	176 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	SPA17	Q15506	151 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	TMEM67	Q5HYA8	995 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	METTL24	Q5JXM2	366 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	RRAGB	Q5VZM2	374 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	C11orf57	Q6ZUT1	292 aa	Predicted RBP	5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	KLHDC4	Q8TBB5	520 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	UBAC1	Q9BSL1	405 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	RASSF4	Q9H2L5	321 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	JADE2	Q9NQC1	790 aa		5.73	□□□□□ -1.49
SYNE2-223	ENST00000557005	CTAGE15	A4D2H0	777 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	GOLGA6L9	A6NEM1	432 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	SPTLC2	O15270	562 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	CTAGE8	P0CG41	777 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	ENOX2	Q16206	610 aa	Known RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	OTUD7B	Q6GQQ9	843 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	CTAGE6	Q86UF2	777 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	CTAGE4	Q8IX94	777 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	CEP112	Q8N8E3	955 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	LSG1	Q9H089	658 aa	Known RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	PLEKHA4	Q9H4M7	779 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	CFAP65	Q6ZU64	1925 aa	Known RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	SGSM2	O43147	1006 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	HSF2BP	O75031	334 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	STX17	P56962	302 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	NLRP12	P59046	1061 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	KCNG4	Q8TDN1	519 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	DBF4	Q9UBU7	674 aa	Predicted RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	PTCH1	Q13635	1447 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	RPAP1	Q9BWH6	1393 aa	Predicted RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	IBTK	Q9P2D0	1353 aa	Predicted RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005		G3V3G9	751 aa		5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	KRT18	P05783	430 aa	Known RBP	5.72	□□□□□ -1.49
SYNE2-223	ENST00000557005	CDC25B	P30305	580 aa		5.72	□□□□□ -1.49

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