RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 RIMBP2O15034 1052 aa14.32□□□□□ -0.12
CCDC88C-212ENST00000556767 UFL1O94874 794 aa14.32□□□□□ -0.12
CCDC88C-212ENST00000556767 GNAI2P04899 355 aa14.32□□□□□ -0.12
CCDC88C-212ENST00000556767 AOC3Q16853 763 aa14.32□□□□□ -0.12
CCDC88C-212ENST00000556767 LDHAL6AQ6ZMR3 332 aa14.32□□□□□ -0.12
CCDC88C-212ENST00000556767 GGA1Q9UJY5 639 aa14.32□□□□□ -0.12
CCDC88C-212ENST00000556767 MINPP1Q9UNW1 487 aa14.32□□□□□ -0.12
CCDC88C-212ENST00000556767 COG6Q9Y2V7 657 aa14.32□□□□□ -0.12
CCDC88C-212ENST00000556767 XDHP47989 1333 aa14.32□□□□□ -0.12
CCDC88C-212ENST00000556767 KCNJ4P48050 445 aa14.31□□□□□ -0.12
CCDC88C-212ENST00000556767 WASHC4Q2M389 1173 aa14.31□□□□□ -0.12
CCDC88C-212ENST00000556767 NIM1KQ8IY84 436 aa14.31□□□□□ -0.12
CCDC88C-212ENST00000556767 KLHDC4Q8TBB5 520 aa14.31□□□□□ -0.12
CCDC88C-212ENST00000556767 TBC1D16Q8TBP0 767 aa14.31□□□□□ -0.12
CCDC88C-212ENST00000556767 GPR101Q96P66 508 aaPredicted RBP14.31□□□□□ -0.12
CCDC88C-212ENST00000556767 EYA3Q99504 573 aa14.31□□□□□ -0.12
CCDC88C-212ENST00000556767 RTFDC1Q9BY42 306 aaPredicted RBP14.31□□□□□ -0.12
CCDC88C-212ENST00000556767 ANKRD2Q9GZV1 360 aa14.31□□□□□ -0.12
CCDC88C-212ENST00000556767 POLLQ9UGP5 575 aa14.31□□□□□ -0.12
CCDC88C-212ENST00000556767 TIAM2Q8IVF5 1701 aa14.3□□□□□ -0.12
CCDC88C-212ENST00000556767 G3V3G9 751 aa14.3□□□□□ -0.12
CCDC88C-212ENST00000556767 ATP2B4P23634 1241 aa14.3□□□□□ -0.12
CCDC88C-212ENST00000556767 CHRNDQ07001 517 aa14.3□□□□□ -0.12
CCDC88C-212ENST00000556767 MVPQ14764 893 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-212ENST00000556767 DCAF8Q5TAQ9 597 aa14.3□□□□□ -0.12
CCDC88C-212ENST00000556767 HELBQ8NG08 1087 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-212ENST00000556767 ZC3H12CQ9C0D7 883 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-212ENST00000556767 C1orf115Q9H7X2 142 aa14.3□□□□□ -0.12
CCDC88C-212ENST00000556767 PODXL2Q9NZ53 605 aa14.3□□□□□ -0.12
CCDC88C-212ENST00000556767 DICER1Q9UPY3 1922 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 ZBTB7BO15156 539 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 TAF5LO75529 589 aa14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 KIAA2012Q0VF49 1180 aa14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 C20orf194Q5TEA3 1177 aa14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 DPY19L2Q6NUT2 758 aa14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 ZNF784Q8NCA9 323 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 PUS3Q9BZE2 481 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 VPS33BQ9H267 617 aa14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 DDX19BQ9UMR2 479 aa14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 ZC3H4Q9UPT8 1303 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-212ENST00000556767 SRGAP3O43295 1099 aa14.28□□□□□ -0.12
CCDC88C-212ENST00000556767 RRP1P56182 461 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-212ENST00000556767 EIF6P56537 245 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-212ENST00000556767 PDE3AQ14432 1141 aa14.28□□□□□ -0.12
CCDC88C-212ENST00000556767 KDM2BQ8NHM5 1336 aa14.28□□□□□ -0.12
CCDC88C-212ENST00000556767 SIL1Q9H173 461 aa14.28□□□□□ -0.12
CCDC88C-212ENST00000556767 GPBP1L1Q9HC44 474 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-212ENST00000556767 DUOX1Q9NRD9 1551 aa14.28□□□□□ -0.12
CCDC88C-212ENST00000556767 ZNF804BA4D1E1 1349 aa14.27□□□□□ -0.12
CCDC88C-212ENST00000556767 RFX5P48382 616 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-212ENST00000556767 DOK7Q18PE1 504 aa14.27□□□□□ -0.13
CCDC88C-212ENST00000556767 LRRC24Q50LG9 513 aa14.27□□□□□ -0.13
CCDC88C-212ENST00000556767 METTL24Q5JXM2 366 aa14.27□□□□□ -0.13
CCDC88C-212ENST00000556767 CHMP4BQ9H444 224 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-212ENST00000556767 DBNDD1Q9H9R9 158 aa14.27□□□□□ -0.13
CCDC88C-212ENST00000556767 LEMD3Q9Y2U8 911 aa14.27□□□□□ -0.13
CCDC88C-212ENST00000556767 MROH5Q6ZUA9 1318 aa14.26□□□□□ -0.13
CCDC88C-212ENST00000556767 ZNF541Q9H0D2 1346 aa14.26□□□□□ -0.13
CCDC88C-212ENST00000556767 WTIPA6NIX2 430 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-212ENST00000556767 EYA2O00167 538 aa14.26□□□□□ -0.13
CCDC88C-212ENST00000556767 ZNRF3Q9ULT6 936 aa14.26□□□□□ -0.13
CCDC88C-212ENST00000556767 PA2G4Q9UQ80 394 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-212ENST00000556767 GJA3Q9Y6H8 435 aa14.26□□□□□ -0.13
CCDC88C-212ENST00000556767 LTBP1Q14766 1721 aa14.26□□□□□ -0.13
CCDC88C-212ENST00000556767 COL4A5P29400 1685 aa14.26□□□□□ -0.13
CCDC88C-212ENST00000556767 GLTPD2A6NH11 291 aa14.25□□□□□ -0.13
CCDC88C-212ENST00000556767 FZD9O00144 591 aa14.25□□□□□ -0.13
CCDC88C-212ENST00000556767 DDNO94850 711 aaPredicted RBP14.25□□□□□ -0.13
CCDC88C-212ENST00000556767 PTPN12Q05209 780 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-212ENST00000556767 RIPOR2Q9Y4F9 1068 aa14.25□□□□□ -0.13
CCDC88C-212ENST00000556767 PNMA6EA0A0J9YXQ4 647 aa14.24□□□□□ -0.13
CCDC88C-212ENST00000556767 SNAP23O00161 211 aa14.24□□□□□ -0.13
CCDC88C-212ENST00000556767 ECE2O60344 883 aa14.24□□□□□ -0.13
CCDC88C-212ENST00000556767 ATP8B2P98198 1209 aa14.24□□□□□ -0.13
CCDC88C-212ENST00000556767 MTX1Q13505 466 aa14.24□□□□□ -0.13
CCDC88C-212ENST00000556767 MED23Q9ULK4 1368 aa14.23□□□□□ -0.13
CCDC88C-212ENST00000556767 RAD17O75943 681 aa14.23□□□□□ -0.13
CCDC88C-212ENST00000556767 KLRK1P26718 216 aa14.23□□□□□ -0.13
CCDC88C-212ENST00000556767 RRAGCQ9HB90 399 aa14.23□□□□□ -0.13
CCDC88C-212ENST00000556767 NMRK2Q9NPI5 230 aa14.23□□□□□ -0.13
CCDC88C-212ENST00000556767 COPRSQ9NQ92 184 aa14.23□□□□□ -0.13
CCDC88C-212ENST00000556767 GOLGB1Q14789 3259 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-212ENST00000556767 YDJCA8MPS7 323 aa14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 CIAO1O76071 339 aa14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 IL15P40933 162 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 CXCL9Q07325 125 aa14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 G3BP1Q13283 466 aaKnown RBP eCLIP14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 OS9Q13438 667 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 CIAPIN1Q6FI81 312 aa14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 TXNRD3Q86VQ6 643 aa14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 FBXW7Q969H0 707 aa14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 ZBTB40Q9NUA8 1239 aa14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 CEP126Q9P2H0 1117 aa14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 FBXO3Q9UK99 471 aa14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 SUPT16HQ9Y5B9 1047 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 A0A1B0GUL6 1792 aa14.22□□□□□ -0.13
CCDC88C-212ENST00000556767 PDE8BO95263 885 aa14.21□□□□□ -0.13
CCDC88C-212ENST00000556767 UBE4AQ14139 1066 aa14.21□□□□□ -0.13
CCDC88C-212ENST00000556767 TNIP1Q15025 636 aa14.21□□□□□ -0.13
CCDC88C-212ENST00000556767 CEP85Q6P2H3 762 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms