RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 G3V3G9 751 aa16.48■□□□□ 0.23
SHMT2-223ENST00000556689 IRS4O14654 1257 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-223ENST00000556689 HOXB7P09629 217 aa16.48■□□□□ 0.23
SHMT2-223ENST00000556689 DCAF8Q5TAQ9 597 aa16.48■□□□□ 0.23
SHMT2-223ENST00000556689 SULF1Q8IWU6 871 aa16.48■□□□□ 0.23
SHMT2-223ENST00000556689 CCDC146Q8IYE0 955 aa16.48■□□□□ 0.23
SHMT2-223ENST00000556689 HYPKQ9NX55 129 aa16.48■□□□□ 0.23
SHMT2-223ENST00000556689 TRPA1O75762 1119 aa16.47■□□□□ 0.23
SHMT2-223ENST00000556689 KIF4BQ2VIQ3 1234 aa16.47■□□□□ 0.23
SHMT2-223ENST00000556689 RNF186Q9NXI6 227 aa16.47■□□□□ 0.23
SHMT2-223ENST00000556689 TRIM35Q9UPQ4 493 aa16.47■□□□□ 0.23
SHMT2-223ENST00000556689 CASP8AP2Q9UKL3 1982 aa16.47■□□□□ 0.23
SHMT2-223ENST00000556689 RTL9Q8NET4 1388 aa16.47■□□□□ 0.23
SHMT2-223ENST00000556689 DUOX1Q9NRD9 1551 aa16.47■□□□□ 0.23
SHMT2-223ENST00000556689 HSP90B1P14625 803 aaKnown RBP16.46■□□□□ 0.23
SHMT2-223ENST00000556689 CSRNP1Q96S65 589 aa16.46■□□□□ 0.23
SHMT2-223ENST00000556689 PODXL2Q9NZ53 605 aa16.46■□□□□ 0.23
SHMT2-223ENST00000556689 ANKIB1Q9P2G1 1089 aa16.46■□□□□ 0.23
SHMT2-223ENST00000556689 LAMB2P55268 1798 aa16.46■□□□□ 0.22
SHMT2-223ENST00000556689 RIC3Q7Z5B4 369 aa16.45■□□□□ 0.22
SHMT2-223ENST00000556689 ZBTB38Q8NAP3 1195 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-223ENST00000556689 RUNDC1Q96C34 613 aa16.45■□□□□ 0.22
SHMT2-223ENST00000556689 GGA3Q9NZ52 723 aa16.45■□□□□ 0.22
SHMT2-223ENST00000556689 UFL1O94874 794 aa16.44■□□□□ 0.22
SHMT2-223ENST00000556689 SLC10A3P09131 477 aa16.44■□□□□ 0.22
SHMT2-223ENST00000556689 DUSP27Q5VZP5 1158 aa16.44■□□□□ 0.22
SHMT2-223ENST00000556689 REM2Q8IYK8 340 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-223ENST00000556689 SEC31BQ9NQW1 1179 aa16.44■□□□□ 0.22
SHMT2-223ENST00000556689 GGA1Q9UJY5 639 aa16.44■□□□□ 0.22
SHMT2-223ENST00000556689 TAF1P21675 1872 aa16.44■□□□□ 0.22
SHMT2-223ENST00000556689 ZNF280AP59817 542 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-223ENST00000556689 SCARF1Q14162 830 aa16.43■□□□□ 0.22
SHMT2-223ENST00000556689 RSBN1LQ6PCB5 846 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-223ENST00000556689 AGBL3Q8NEM8 1001 aa16.43■□□□□ 0.22
SHMT2-223ENST00000556689 CDCA5Q96FF9 252 aa16.43■□□□□ 0.22
SHMT2-223ENST00000556689 ASTN2O75129 1339 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-223ENST00000556689 GOLGA2Q08379 1002 aa16.42■□□□□ 0.22
SHMT2-223ENST00000556689 WDR43Q15061 677 aaKnown RBP eCLIP16.42■□□□□ 0.22
SHMT2-223ENST00000556689 CCDC152Q4G0S7 254 aa16.42■□□□□ 0.22
SHMT2-223ENST00000556689 PCDH10Q9P2E7 1040 aa16.42■□□□□ 0.22
SHMT2-223ENST00000556689 ANGEL2Q5VTE6 544 aaKnown RBP16.41■□□□□ 0.22
SHMT2-223ENST00000556689 LRRC37AA6NMS7 1700 aa16.41■□□□□ 0.22
SHMT2-223ENST00000556689 PDE8AO60658 829 aa16.4■□□□□ 0.22
SHMT2-223ENST00000556689 USP17L8P0C7I0 530 aa16.4■□□□□ 0.22
SHMT2-223ENST00000556689 FKBP1BP68106 108 aa16.4■□□□□ 0.22
SHMT2-223ENST00000556689 CCDC191Q8NCU4 936 aa16.4■□□□□ 0.22
SHMT2-223ENST00000556689 MYD88Q99836 296 aa16.4■□□□□ 0.22
SHMT2-223ENST00000556689 ADAMTS8Q9UP79 889 aa16.4■□□□□ 0.22
SHMT2-223ENST00000556689 PCCAP05165 728 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-223ENST00000556689 SOX10P56693 466 aa16.39■□□□□ 0.21
SHMT2-223ENST00000556689 PODNQ7Z5L7 613 aa16.39■□□□□ 0.21
SHMT2-223ENST00000556689 CTU1Q7Z7A3 348 aaKnown RBP16.39■□□□□ 0.21
SHMT2-223ENST00000556689 RASAL3Q86YV0 1011 aa16.39■□□□□ 0.21
SHMT2-223ENST00000556689 ANKRD18AQ8IVF6 992 aa16.39■□□□□ 0.21
SHMT2-223ENST00000556689 GMLQ99445 158 aa16.39■□□□□ 0.21
SHMT2-223ENST00000556689 PHAXQ9H814 394 aaKnown RBP16.39■□□□□ 0.21
SHMT2-223ENST00000556689 MYOZ2Q9NPC6 264 aa16.39■□□□□ 0.21
SHMT2-223ENST00000556689 MBIPQ9NS73 344 aa16.39■□□□□ 0.21
SHMT2-223ENST00000556689 MYBBP1AQ9BQG0 1328 aaKnown RBP16.39■□□□□ 0.21
SHMT2-223ENST00000556689 DDX60Q8IY21 1712 aaKnown RBP16.39■□□□□ 0.21
SHMT2-223ENST00000556689 USP17L3A6NCW0 530 aa16.38■□□□□ 0.21
SHMT2-223ENST00000556689 USP17L4A6NCW7 530 aa16.38■□□□□ 0.21
SHMT2-223ENST00000556689 ATP2B4P23634 1241 aa16.38■□□□□ 0.21
SHMT2-223ENST00000556689 USP17L1Q7RTZ2 530 aa16.38■□□□□ 0.21
SHMT2-223ENST00000556689 JARID2Q92833 1246 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-223ENST00000556689 CCDC85AQ96PX6 553 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-223ENST00000556689 CWC25Q9NXE8 425 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-223ENST00000556689 POLR2AP24928 1970 aaKnown RBP16.38■□□□□ 0.21
SHMT2-223ENST00000556689 XDHP47989 1333 aa16.38■□□□□ 0.21
SHMT2-223ENST00000556689 PITPNM2Q9BZ72 1349 aa16.38■□□□□ 0.21
SHMT2-223ENST00000556689 ELL2O00472 640 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-223ENST00000556689 COL4A1P02462 1669 aa16.37■□□□□ 0.21
SHMT2-223ENST00000556689 ZNF853P0CG23 659 aa16.36■□□□□ 0.21
SHMT2-223ENST00000556689 PKN2Q16513 984 aaKnown RBP16.36■□□□□ 0.21
SHMT2-223ENST00000556689 TNRC18O15417 2968 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-223ENST00000556689 ZNF609O15014 1411 aa16.36■□□□□ 0.21
SHMT2-223ENST00000556689 UBE2Q2LH0YL09 131 aa16.35■□□□□ 0.21
SHMT2-223ENST00000556689 DDX58O95786 925 aaKnown RBP16.35■□□□□ 0.21
SHMT2-223ENST00000556689 MOB2Q70IA6 237 aa16.35■□□□□ 0.21
SHMT2-223ENST00000556689 METTL22Q9BUU2 404 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-223ENST00000556689 CHMP4AQ9BY43 222 aa16.35■□□□□ 0.21
SHMT2-223ENST00000556689 HDAC9Q9UKV0 1011 aa16.35■□□□□ 0.21
SHMT2-223ENST00000556689 SCAF8Q9UPN6 1271 aaKnown RBP16.35■□□□□ 0.21
SHMT2-223ENST00000556689 GNAI1P63096 354 aa16.34■□□□□ 0.21
SHMT2-223ENST00000556689 CALD1Q05682 793 aaKnown RBP16.34■□□□□ 0.21
SHMT2-223ENST00000556689 DDX10Q13206 875 aaKnown RBP16.34■□□□□ 0.21
SHMT2-223ENST00000556689 PRAMEF18Q5VWM3 479 aa16.34■□□□□ 0.21
SHMT2-223ENST00000556689 OGFOD1Q8N543 542 aa16.34■□□□□ 0.21
SHMT2-223ENST00000556689 CDC5LQ99459 802 aaKnown RBP16.34■□□□□ 0.21
SHMT2-223ENST00000556689 IFT57Q9NWB7 429 aa16.34■□□□□ 0.21
SHMT2-223ENST00000556689 TBC1D8O95759 1140 aa16.33■□□□□ 0.2
SHMT2-223ENST00000556689 TM4SF4P48230 202 aa16.33■□□□□ 0.2
SHMT2-223ENST00000556689 TTLL12Q14166 644 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-223ENST00000556689 NBPF9Q3BBW0 867 aa16.33■□□□□ 0.2
SHMT2-223ENST00000556689 BSDC1Q9NW68 430 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-223ENST00000556689 MINPP1Q9UNW1 487 aa16.33■□□□□ 0.2
SHMT2-223ENST00000556689 HPS5Q9UPZ3 1129 aa16.33■□□□□ 0.2
SHMT2-223ENST00000556689 WTIPA6NIX2 430 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-223ENST00000556689 NF2P35240 595 aa16.32■□□□□ 0.2
SHMT2-223ENST00000556689 CTSWP56202 376 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms