RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 COL13A1Q5TAT6 717 aaPredicted RBP9.56□□□□□ -0.88
LINC00643-204ENST00000555934 DHX32Q7L7V1 743 aaKnown RBP9.56□□□□□ -0.88
LINC00643-204ENST00000555934 SYT9Q86SS6 491 aa9.56□□□□□ -0.88
LINC00643-204ENST00000555934 OR13H1Q8NG92 308 aa9.56□□□□□ -0.88
LINC00643-204ENST00000555934 MRS2Q9HD23 443 aa9.56□□□□□ -0.88
LINC00643-204ENST00000555934 LATS2Q9NRM7 1088 aa9.56□□□□□ -0.88
LINC00643-204ENST00000555934 TLR7Q9NYK1 1049 aaKnown RBP9.56□□□□□ -0.88
LINC00643-204ENST00000555934 GADD45BO75293 160 aaPredicted RBP9.55□□□□□ -0.88
LINC00643-204ENST00000555934 FGD1P98174 961 aa9.55□□□□□ -0.88
LINC00643-204ENST00000555934 NEUROD1Q13562 356 aa9.55□□□□□ -0.88
LINC00643-204ENST00000555934 HFE2Q6ZVN8 426 aa9.55□□□□□ -0.88
LINC00643-204ENST00000555934 NLRP2Q9NX02 1062 aa9.55□□□□□ -0.88
LINC00643-204ENST00000555934 ADAMTS2O95450 1211 aa9.54□□□□□ -0.88
LINC00643-204ENST00000555934 ACPPP15309 386 aa9.54□□□□□ -0.88
LINC00643-204ENST00000555934 MAP2K3P46734 347 aa9.54□□□□□ -0.88
LINC00643-204ENST00000555934 PLAURQ03405 335 aa9.54□□□□□ -0.88
LINC00643-204ENST00000555934 TSNAXIP1Q2TAA8 658 aa9.54□□□□□ -0.88
LINC00643-204ENST00000555934 NCAPG2Q86XI2 1143 aa9.54□□□□□ -0.88
LINC00643-204ENST00000555934 GALNT12Q8IXK2 581 aa9.54□□□□□ -0.88
LINC00643-204ENST00000555934 FBF1Q8TES7 1133 aa9.54□□□□□ -0.88
LINC00643-204ENST00000555934 UBE2OQ9C0C9 1292 aaKnown RBP9.54□□□□□ -0.88
LINC00643-204ENST00000555934 VTI1BQ9UEU0 232 aa9.54□□□□□ -0.88
LINC00643-204ENST00000555934 DAB2P98082 770 aa9.53□□□□□ -0.88
LINC00643-204ENST00000555934 PMEPA1Q969W9 287 aa9.53□□□□□ -0.88
LINC00643-204ENST00000555934 BCL11AQ9H165 835 aa9.53□□□□□ -0.88
LINC00643-204ENST00000555934 ZBTB42B2RXF5 422 aa9.52□□□□□ -0.89
LINC00643-204ENST00000555934 J3QW42 95 aa9.52□□□□□ -0.89
LINC00643-204ENST00000555934 TRPA1O75762 1119 aa9.52□□□□□ -0.89
LINC00643-204ENST00000555934 MAP3K6O95382 1288 aa9.52□□□□□ -0.89
LINC00643-204ENST00000555934 SLURP2P0DP57 97 aa9.52□□□□□ -0.89
LINC00643-204ENST00000555934 GNA15P30679 374 aa9.52□□□□□ -0.89
LINC00643-204ENST00000555934 ZNF468Q5VIY5 522 aaPredicted RBP9.52□□□□□ -0.89
LINC00643-204ENST00000555934 TMC4Q7Z404 712 aa9.52□□□□□ -0.89
LINC00643-204ENST00000555934 SPG7Q9UQ90 795 aa9.52□□□□□ -0.89
LINC00643-204ENST00000555934 SORBS3O60504 671 aa9.51□□□□□ -0.89
LINC00643-204ENST00000555934 HYAL2Q12891 473 aa9.51□□□□□ -0.89
LINC00643-204ENST00000555934 OSBPL7Q9BZF2 842 aa9.51□□□□□ -0.89
LINC00643-204ENST00000555934 DNAJB12Q9NXW2 375 aaKnown RBP9.51□□□□□ -0.89
LINC00643-204ENST00000555934 SALL4Q9UJQ4 1053 aa9.51□□□□□ -0.89
LINC00643-204ENST00000555934 ARAFP10398 606 aa9.5□□□□□ -0.89
LINC00643-204ENST00000555934 KCNMA1Q12791 1236 aa9.5□□□□□ -0.89
LINC00643-204ENST00000555934 MRPL58Q14197 206 aaKnown RBP9.5□□□□□ -0.89
LINC00643-204ENST00000555934 NXPE4Q6UWF7 544 aa9.5□□□□□ -0.89
LINC00643-204ENST00000555934 OXCT2Q9BYC2 517 aaPredicted RBP9.5□□□□□ -0.89
LINC00643-204ENST00000555934 EHD4Q9H223 541 aa9.5□□□□□ -0.89
LINC00643-204ENST00000555934 EFCC1Q9HA90 598 aa9.5□□□□□ -0.89
LINC00643-204ENST00000555934 AVENQ9NQS1 362 aaPredicted RBP9.5□□□□□ -0.89
LINC00643-204ENST00000555934 KLF15Q9UIH9 416 aa9.5□□□□□ -0.89
LINC00643-204ENST00000555934 A0A1W2PP55 124 aa9.49□□□□□ -0.89
LINC00643-204ENST00000555934 NEURL1BA8MQ27 555 aa9.49□□□□□ -0.89
LINC00643-204ENST00000555934 RECKO95980 971 aa9.49□□□□□ -0.89
LINC00643-204ENST00000555934 EDN3P14138 238 aa9.49□□□□□ -0.89
LINC00643-204ENST00000555934 SOX18P35713 384 aa9.49□□□□□ -0.89
LINC00643-204ENST00000555934 GSK3AP49840 483 aa9.49□□□□□ -0.89
LINC00643-204ENST00000555934 PEAR1Q5VY43 1037 aaPredicted RBP9.49□□□□□ -0.89
LINC00643-204ENST00000555934 ACDQ96AP0 544 aa9.49□□□□□ -0.89
LINC00643-204ENST00000555934 BCO2Q9BYV7 579 aa9.49□□□□□ -0.89
LINC00643-204ENST00000555934 BACH2Q9BYV9 841 aa9.49□□□□□ -0.89
LINC00643-204ENST00000555934 LOC102724428A0A0B4J2F2 783 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 CPB1P15086 417 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 ADH6P28332 368 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 NRLP54845 237 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 SIK1P57059 783 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 GPLD1P80108 840 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 GRM2Q14416 872 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 SPACA7Q96KW9 195 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 OSMRQ99650 979 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 ZKSCAN3Q9BRR0 538 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 GDF2Q9UK05 429 aaPredicted RBP9.48□□□□□ -0.89
LINC00643-204ENST00000555934 AK5Q9Y6K8 562 aa9.48□□□□□ -0.89
LINC00643-204ENST00000555934 EIF2AK2P19525 551 aaKnown RBP9.47□□□□□ -0.89
LINC00643-204ENST00000555934 EIF4BP23588 611 aaKnown RBP9.47□□□□□ -0.89
LINC00643-204ENST00000555934 ATP11AP98196 1134 aa9.47□□□□□ -0.89
LINC00643-204ENST00000555934 GOLGA6L1Q8N7Z2 621 aa9.47□□□□□ -0.89
LINC00643-204ENST00000555934 TRPM4Q8TD43 1214 aa9.47□□□□□ -0.89
LINC00643-204ENST00000555934 HHIPQ96QV1 700 aa9.47□□□□□ -0.89
LINC00643-204ENST00000555934 SUV39H2Q9H5I1 410 aa9.47□□□□□ -0.89
LINC00643-204ENST00000555934 C12orf49Q9H741 205 aa9.47□□□□□ -0.89
LINC00643-204ENST00000555934 GGA1Q9UJY5 639 aa9.47□□□□□ -0.89
LINC00643-204ENST00000555934 SIN3BO75182 1162 aa9.46□□□□□ -0.9
LINC00643-204ENST00000555934 KIF4AO95239 1232 aa9.46□□□□□ -0.9
LINC00643-204ENST00000555934 GHRHP01286 108 aa9.46□□□□□ -0.9
LINC00643-204ENST00000555934 SLCO4C1Q6ZQN7 724 aa9.46□□□□□ -0.9
LINC00643-204ENST00000555934 FAM35AQ86V20 835 aa9.46□□□□□ -0.9
LINC00643-204ENST00000555934 FCHSD1Q86WN1 690 aa9.46□□□□□ -0.9
LINC00643-204ENST00000555934 CEP120Q8N960 986 aa9.46□□□□□ -0.9
LINC00643-204ENST00000555934 TMEM87AQ8NBN3 555 aa9.46□□□□□ -0.9
LINC00643-204ENST00000555934 RASSF4Q9H2L5 321 aa9.46□□□□□ -0.9
LINC00643-204ENST00000555934 LIN7BQ9HAP6 207 aa9.46□□□□□ -0.9
LINC00643-204ENST00000555934 ADH7P40394 386 aa9.45□□□□□ -0.9
LINC00643-204ENST00000555934 WHAMMQ8TF30 809 aa9.45□□□□□ -0.9
LINC00643-204ENST00000555934 SLC6A14Q9UN76 642 aa9.45□□□□□ -0.9
LINC00643-204ENST00000555934 METTL12A8MUP2 240 aa9.44□□□□□ -0.9
LINC00643-204ENST00000555934 CTSHP09668 335 aa9.44□□□□□ -0.9
LINC00643-204ENST00000555934 USP17L7P0C7H9 530 aa9.44□□□□□ -0.9
LINC00643-204ENST00000555934 VAMP1P23763 118 aa9.44□□□□□ -0.9
LINC00643-204ENST00000555934 FCGRTP55899 365 aa9.44□□□□□ -0.9
LINC00643-204ENST00000555934 SUZ12Q15022 739 aaKnown RBP9.44□□□□□ -0.9
LINC00643-204ENST00000555934 KIAA0319Q5VV43 1072 aa9.44□□□□□ -0.9
LINC00643-204ENST00000555934 LYPD4Q6UWN0 246 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms