RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 GPR25O00155 361 aa12.74□□□□□ -0.37
SCFD1-215ENST00000555259 ANXA1P04083 346 aa12.74□□□□□ -0.37
SCFD1-215ENST00000555259 VIL1P09327 827 aaKnown RBP12.74□□□□□ -0.37
SCFD1-215ENST00000555259 ANGEL2Q5VTE6 544 aaKnown RBP12.74□□□□□ -0.37
SCFD1-215ENST00000555259 DLG5Q8TDM6 1919 aa12.73□□□□□ -0.37
SCFD1-215ENST00000555259 GPSM2P81274 684 aa12.73□□□□□ -0.37
SCFD1-215ENST00000555259 MOB2Q70IA6 237 aa12.73□□□□□ -0.37
SCFD1-215ENST00000555259 CELF1Q92879 486 aaKnown RBP12.73□□□□□ -0.37
SCFD1-215ENST00000555259 EYA3Q99504 573 aa12.73□□□□□ -0.37
SCFD1-215ENST00000555259 DDX60Q8IY21 1712 aaKnown RBP12.73□□□□□ -0.37
SCFD1-215ENST00000555259 EIF2S2P20042 333 aaKnown RBP12.73□□□□□ -0.37
SCFD1-215ENST00000555259 PPP2R1AP30153 589 aa12.73□□□□□ -0.37
SCFD1-215ENST00000555259 TM4SF4P48230 202 aa12.73□□□□□ -0.37
SCFD1-215ENST00000555259 ZNF280AP59817 542 aaPredicted RBP12.73□□□□□ -0.37
SCFD1-215ENST00000555259 TCIRG1Q13488 830 aa12.73□□□□□ -0.37
SCFD1-215ENST00000555259 SCARF1Q14162 830 aa12.73□□□□□ -0.37
SCFD1-215ENST00000555259 SCN9AQ15858 1988 aa12.73□□□□□ -0.37
SCFD1-215ENST00000555259 UBE2Q2LH0YL09 131 aa12.72□□□□□ -0.37
SCFD1-215ENST00000555259 COPS6Q7L5N1 327 aa12.72□□□□□ -0.37
SCFD1-215ENST00000555259 TBC1D16Q8TBP0 767 aa12.72□□□□□ -0.37
SCFD1-215ENST00000555259 COL4A1P02462 1669 aa12.71□□□□□ -0.37
SCFD1-215ENST00000555259 ZNF609O15014 1411 aa12.71□□□□□ -0.37
SCFD1-215ENST00000555259 FKTNO75072 461 aa12.71□□□□□ -0.37
SCFD1-215ENST00000555259 NEFMP07197 916 aa12.71□□□□□ -0.37
SCFD1-215ENST00000555259 FXR1P51114 621 aaKnown RBP eCLIP12.71□□□□□ -0.37
SCFD1-215ENST00000555259 AIMP1Q12904 312 aaKnown RBP12.71□□□□□ -0.37
SCFD1-215ENST00000555259 SF3B3Q15393 1217 aaKnown RBP12.71□□□□□ -0.37
SCFD1-215ENST00000555259 ZNF428Q96B54 188 aa12.71□□□□□ -0.37
SCFD1-215ENST00000555259 PITPNM2Q9BZ72 1349 aa12.71□□□□□ -0.38
SCFD1-215ENST00000555259 AGBL3Q8NEM8 1001 aa12.7□□□□□ -0.38
SCFD1-215ENST00000555259 XAGE3Q8WTP9 111 aa12.7□□□□□ -0.38
SCFD1-215ENST00000555259 CFHR5Q9BXR6 569 aa12.7□□□□□ -0.38
SCFD1-215ENST00000555259 ZC3H12CQ9C0D7 883 aaKnown RBP12.7□□□□□ -0.38
SCFD1-215ENST00000555259 TSPYL4Q9UJ04 414 aa12.7□□□□□ -0.38
SCFD1-215ENST00000555259 SCAF8Q9UPN6 1271 aaKnown RBP12.7□□□□□ -0.38
SCFD1-215ENST00000555259 POTEFA5A3E0 1075 aa12.69□□□□□ -0.38
SCFD1-215ENST00000555259 NFE2L2Q16236 605 aa12.69□□□□□ -0.38
SCFD1-215ENST00000555259 RSBN1LQ6PCB5 846 aaPredicted RBP12.69□□□□□ -0.38
SCFD1-215ENST00000555259 PLEKHF1Q96S99 279 aa12.69□□□□□ -0.38
SCFD1-215ENST00000555259 R3HDMLQ9H3Y0 253 aa12.69□□□□□ -0.38
SCFD1-215ENST00000555259 MYOZ2Q9NPC6 264 aa12.69□□□□□ -0.38
SCFD1-215ENST00000555259 SREBF2Q12772 1141 aa12.69□□□□□ -0.38
SCFD1-215ENST00000555259 MKRN3Q13064 507 aaKnown RBP12.69□□□□□ -0.38
SCFD1-215ENST00000555259 PRAMEF18Q5VWM3 479 aa12.69□□□□□ -0.38
SCFD1-215ENST00000555259 FAM89AQ96GI7 184 aa12.69□□□□□ -0.38
SCFD1-215ENST00000555259 G3V3G9 751 aa12.68□□□□□ -0.38
SCFD1-215ENST00000555259 USP17L8P0C7I0 530 aa12.68□□□□□ -0.38
SCFD1-215ENST00000555259 TTLL12Q14166 644 aaPredicted RBP12.68□□□□□ -0.38
SCFD1-215ENST00000555259 DCAF8Q5TAQ9 597 aa12.68□□□□□ -0.38
SCFD1-215ENST00000555259 INTS3Q68E01 1043 aaKnown RBP12.68□□□□□ -0.38
SCFD1-215ENST00000555259 NECTIN2Q92692 538 aa12.68□□□□□ -0.38
SCFD1-215ENST00000555259 GMLQ99445 158 aa12.68□□□□□ -0.38
SCFD1-215ENST00000555259 PODXL2Q9NZ53 605 aa12.68□□□□□ -0.38
SCFD1-215ENST00000555259 KIAA0100Q14667 2235 aaKnown RBP12.67□□□□□ -0.38
SCFD1-215ENST00000555259 UFL1O94874 794 aa12.67□□□□□ -0.38
SCFD1-215ENST00000555259 RPS8P62241 208 aaKnown RBP12.67□□□□□ -0.38
SCFD1-215ENST00000555259 TRIM17Q9Y577 477 aa12.66□□□□□ -0.38
SCFD1-215ENST00000555259 RANBP2P49792 3224 aaKnown RBP12.65□□□□□ -0.38
SCFD1-215ENST00000555259 NBPF9Q3BBW0 867 aa12.65□□□□□ -0.38
SCFD1-215ENST00000555259 OTOP1Q7RTM1 612 aa12.65□□□□□ -0.38
SCFD1-215ENST00000555259 ISCA1Q9BUE6 129 aa12.65□□□□□ -0.38
SCFD1-215ENST00000555259 ANKIB1Q9P2G1 1089 aa12.65□□□□□ -0.38
SCFD1-215ENST00000555259 GGA1Q9UJY5 639 aa12.65□□□□□ -0.38
SCFD1-215ENST00000555259 PSME4Q14997 1843 aa12.65□□□□□ -0.38
SCFD1-215ENST00000555259 ATP5J2-PTCD1G3V325 749 aa12.64□□□□□ -0.39
SCFD1-215ENST00000555259 PTPN12Q05209 780 aaKnown RBP12.64□□□□□ -0.39
SCFD1-215ENST00000555259 RTL5Q5HYW3 569 aaPredicted RBP12.64□□□□□ -0.39
SCFD1-215ENST00000555259 IRS4O14654 1257 aaPredicted RBP12.64□□□□□ -0.39
SCFD1-215ENST00000555259 ALDH1A1P00352 501 aa12.64□□□□□ -0.39
SCFD1-215ENST00000555259 NF2P35240 595 aa12.64□□□□□ -0.39
SCFD1-215ENST00000555259 PLBD2Q8NHP8 589 aa12.64□□□□□ -0.39
SCFD1-215ENST00000555259 BABAM1Q9NWV8 329 aa12.64□□□□□ -0.39
SCFD1-215ENST00000555259 RBBP6Q7Z6E9 1792 aaKnown RBP12.64□□□□□ -0.39
SCFD1-215ENST00000555259 MAPK8IP3Q9UPT6 1336 aa12.64□□□□□ -0.39
SCFD1-215ENST00000555259 USP17L3A6NCW0 530 aa12.63□□□□□ -0.39
SCFD1-215ENST00000555259 USP17L4A6NCW7 530 aa12.63□□□□□ -0.39
SCFD1-215ENST00000555259 EN2P19622 333 aaPredicted RBP12.63□□□□□ -0.39
SCFD1-215ENST00000555259 SPRYD7Q5W111 196 aa12.63□□□□□ -0.39
SCFD1-215ENST00000555259 USP17L1Q7RTZ2 530 aa12.63□□□□□ -0.39
SCFD1-215ENST00000555259 PODNQ7Z5L7 613 aa12.63□□□□□ -0.39
SCFD1-215ENST00000555259 SEC31BQ9NQW1 1179 aa12.63□□□□□ -0.39
SCFD1-215ENST00000555259 CHPF2Q9P2E5 772 aa12.63□□□□□ -0.39
SCFD1-215ENST00000555259 COLQQ9Y215 455 aaPredicted RBP12.63□□□□□ -0.39
SCFD1-215ENST00000555259 A0A0C4DFX4 3053 aa12.62□□□□□ -0.39
SCFD1-215ENST00000555259 WNT10BO00744 389 aa12.62□□□□□ -0.39
SCFD1-215ENST00000555259 PRKG1Q13976 671 aa12.62□□□□□ -0.39
SCFD1-215ENST00000555259 LDLRAD1Q5T700 205 aa12.62□□□□□ -0.39
SCFD1-215ENST00000555259 ANKRD13DQ6ZTN6 518 aa12.62□□□□□ -0.39
SCFD1-215ENST00000555259 ARMC9Q7Z3E5 817 aa12.62□□□□□ -0.39
SCFD1-215ENST00000555259 ARMC5Q96C12 935 aa12.62□□□□□ -0.39
SCFD1-215ENST00000555259 TRIOBPQ9H2D6 2365 aa12.62□□□□□ -0.39
SCFD1-215ENST00000555259 CEP290O15078 2479 aa12.62□□□□□ -0.39
SCFD1-215ENST00000555259 KRT24Q2M2I5 525 aa12.61□□□□□ -0.39
SCFD1-215ENST00000555259 IFNL1Q8IU54 200 aa12.61□□□□□ -0.39
SCFD1-215ENST00000555259 PTPN22Q9Y2R2 807 aa12.61□□□□□ -0.39
SCFD1-215ENST00000555259 MANSC4A6NHS7 340 aaPredicted RBP12.6□□□□□ -0.39
SCFD1-215ENST00000555259 INHBEP58166 350 aa12.6□□□□□ -0.39
SCFD1-215ENST00000555259 TRIM28Q13263 835 aaKnown RBP12.6□□□□□ -0.39
SCFD1-215ENST00000555259 OGFOD1Q8N543 542 aa12.6□□□□□ -0.39
SCFD1-215ENST00000555259 PNNQ9H307 717 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms