RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 MTX1Q13505 466 aa13.56□□□□□ -0.24
SHMT2-218ENST00000555213 LDHAL6AQ6ZMR3 332 aa13.56□□□□□ -0.24
SHMT2-218ENST00000555213 MPNDQ8N594 471 aa13.56□□□□□ -0.24
SHMT2-218ENST00000555213 PSMD1Q99460 953 aa13.56□□□□□ -0.24
SHMT2-218ENST00000555213 ANKRD2Q9GZV1 360 aa13.56□□□□□ -0.24
SHMT2-218ENST00000555213 C1orf115Q9H7X2 142 aa13.56□□□□□ -0.24
SHMT2-218ENST00000555213 CNNM1Q9NRU3 951 aa13.56□□□□□ -0.24
SHMT2-218ENST00000555213 XDHP47989 1333 aa13.56□□□□□ -0.24
SHMT2-218ENST00000555213 C1QTNF8P60827 252 aa13.55□□□□□ -0.24
SHMT2-218ENST00000555213 OLFM4Q6UX06 510 aa13.55□□□□□ -0.24
SHMT2-218ENST00000555213 NSFL1CQ9UNZ2 370 aaKnown RBP13.55□□□□□ -0.24
SHMT2-218ENST00000555213 UTRNP46939 3433 aa13.55□□□□□ -0.24
SHMT2-218ENST00000555213 NFKBIEO00221 500 aa13.54□□□□□ -0.24
SHMT2-218ENST00000555213 LMNB1P20700 586 aa13.54□□□□□ -0.24
SHMT2-218ENST00000555213 KCNJ4P48050 445 aa13.54□□□□□ -0.24
SHMT2-218ENST00000555213 RASSF7Q02833 373 aa13.54□□□□□ -0.24
SHMT2-218ENST00000555213 HDAC1Q13547 482 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-218ENST00000555213 SNED1Q8TER0 1413 aa13.54□□□□□ -0.24
SHMT2-218ENST00000555213 COL4A1P02462 1669 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 HMMRO75330 724 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 UFL1O94874 794 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 GPSM2P81274 684 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 ZNF594Q96JF6 807 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-218ENST00000555213 EYA3Q99504 573 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 PODXL2Q9NZ53 605 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 GGA1Q9UJY5 639 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 FBXO3Q9UK99 471 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 MINPP1Q9UNW1 487 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 MROH5Q6ZUA9 1318 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 SPEF2Q9C093 1822 aa13.53□□□□□ -0.24
SHMT2-218ENST00000555213 C6orf229H3BNL8 230 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 CIAO1O76071 339 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 ATP2B4P23634 1241 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 CHRNDQ07001 517 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 CEP85Q6P2H3 762 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 CENPQQ7L2Z9 268 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-218ENST00000555213 SKAP1Q86WV1 359 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 RPAP2Q8IXW5 612 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-218ENST00000555213 RTFDC1Q9BY42 306 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-218ENST00000555213 VPS33BQ9H267 617 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 COPRSQ9NQ92 184 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 RNF181Q9P0P0 153 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 TAF1P21675 1872 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 FER1L6Q2WGJ9 1857 aa13.52□□□□□ -0.25
SHMT2-218ENST00000555213 EYA2O00167 538 aa13.51□□□□□ -0.25
SHMT2-218ENST00000555213 PPIP5K2O43314 1243 aa13.51□□□□□ -0.25
SHMT2-218ENST00000555213 IARSP41252 1262 aaKnown RBP13.51□□□□□ -0.25
SHMT2-218ENST00000555213 RFX5P48382 616 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-218ENST00000555213 ATP8B2P98198 1209 aa13.51□□□□□ -0.25
SHMT2-218ENST00000555213 METTL24Q5JXM2 366 aa13.51□□□□□ -0.25
SHMT2-218ENST00000555213 LARGE2Q8N3Y3 721 aa13.51□□□□□ -0.25
SHMT2-218ENST00000555213 KLHDC4Q8TBB5 520 aa13.51□□□□□ -0.25
SHMT2-218ENST00000555213 SIL1Q9H173 461 aa13.51□□□□□ -0.25
SHMT2-218ENST00000555213 RWDD1Q9H446 243 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-218ENST00000555213 ZNF277Q9NRM2 450 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-218ENST00000555213 LEMD3Q9Y2U8 911 aa13.51□□□□□ -0.25
SHMT2-218ENST00000555213 DUOX1Q9NRD9 1551 aa13.5□□□□□ -0.25
SHMT2-218ENST00000555213 ZC3H4Q9UPT8 1303 aaKnown RBP13.5□□□□□ -0.25
SHMT2-218ENST00000555213 PNMA6EA0A0J9YXQ4 647 aa13.5□□□□□ -0.25
SHMT2-218ENST00000555213 IL15P40933 162 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-218ENST00000555213 PTPN12Q05209 780 aaKnown RBP13.5□□□□□ -0.25
SHMT2-218ENST00000555213 OS9Q13438 667 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-218ENST00000555213 C9orf131Q5VYM1 1079 aa13.5□□□□□ -0.25
SHMT2-218ENST00000555213 SLC51AQ86UW1 340 aa13.5□□□□□ -0.25
SHMT2-218ENST00000555213 TBC1D16Q8TBP0 767 aa13.5□□□□□ -0.25
SHMT2-218ENST00000555213 SSH3Q8TE77 659 aa13.5□□□□□ -0.25
SHMT2-218ENST00000555213 JDP2Q8WYK2 163 aa13.5□□□□□ -0.25
SHMT2-218ENST00000555213 LTBP1Q14766 1721 aa13.5□□□□□ -0.25
SHMT2-218ENST00000555213 CHD4Q14839 1912 aa13.49□□□□□ -0.25
SHMT2-218ENST00000555213 ZNF804BA4D1E1 1349 aa13.49□□□□□ -0.25
SHMT2-218ENST00000555213 G3V3G9 751 aa13.49□□□□□ -0.25
SHMT2-218ENST00000555213 KIAA2012Q0VF49 1180 aa13.49□□□□□ -0.25
SHMT2-218ENST00000555213 POLA2Q14181 598 aa13.49□□□□□ -0.25
SHMT2-218ENST00000555213 WASHC4Q2M389 1173 aa13.49□□□□□ -0.25
SHMT2-218ENST00000555213 DCAF8Q5TAQ9 597 aa13.49□□□□□ -0.25
SHMT2-218ENST00000555213 SMC5Q8IY18 1101 aa13.49□□□□□ -0.25
SHMT2-218ENST00000555213 NIM1KQ8IY84 436 aa13.49□□□□□ -0.25
SHMT2-218ENST00000555213 PUS3Q9BZE2 481 aaKnown RBP13.49□□□□□ -0.25
SHMT2-218ENST00000555213 ZC3H12CQ9C0D7 883 aaKnown RBP13.49□□□□□ -0.25
SHMT2-218ENST00000555213 RIPOR2Q9Y4F9 1068 aa13.49□□□□□ -0.25
SHMT2-218ENST00000555213 MED23Q9ULK4 1368 aa13.48□□□□□ -0.25
SHMT2-218ENST00000555213 G3BP1Q13283 466 aaKnown RBP eCLIP13.48□□□□□ -0.255e-8■■■■□ 19.7
SHMT2-218ENST00000555213 PUM3Q15397 648 aaKnown RBP13.48□□□□□ -0.25
SHMT2-218ENST00000555213 AOC3Q16853 763 aa13.48□□□□□ -0.25
SHMT2-218ENST00000555213 LRRC24Q50LG9 513 aa13.48□□□□□ -0.25
SHMT2-218ENST00000555213 HSP90AB4PQ58FF6 505 aa13.48□□□□□ -0.25
SHMT2-218ENST00000555213 CEP126Q9P2H0 1117 aa13.48□□□□□ -0.25
SHMT2-218ENST00000555213 POLLQ9UGP5 575 aa13.48□□□□□ -0.25
SHMT2-218ENST00000555213 PA2G4Q9UQ80 394 aaKnown RBP13.48□□□□□ -0.25
SHMT2-218ENST00000555213 TAF5LO75529 589 aa13.47□□□□□ -0.25
SHMT2-218ENST00000555213 SURF6O75683 361 aaKnown RBP13.47□□□□□ -0.25
SHMT2-218ENST00000555213 ERC1Q8IUD2 1116 aa13.47□□□□□ -0.25
SHMT2-218ENST00000555213 HELBQ8NG08 1087 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-218ENST00000555213 DCTPP1Q9H773 170 aa13.47□□□□□ -0.25
SHMT2-218ENST00000555213 TIAM2Q8IVF5 1701 aa13.47□□□□□ -0.25
SHMT2-218ENST00000555213 RIMBP2O15034 1052 aa13.46□□□□□ -0.25
SHMT2-218ENST00000555213 PDE8BO95263 885 aa13.46□□□□□ -0.25
SHMT2-218ENST00000555213 SLC5A1P13866 664 aa13.46□□□□□ -0.25
SHMT2-218ENST00000555213 UBE4AQ14139 1066 aa13.46□□□□□ -0.25
SHMT2-218ENST00000555213 ATG9AQ7Z3C6 839 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms