RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 ANKRD2Q9GZV1 360 aa12.64□□□□□ -0.39
SYNE2-215ENST00000554997 TNRC6CQ9HCJ0 1690 aaKnown RBP12.64□□□□□ -0.39
SYNE2-215ENST00000554997 MROH5Q6ZUA9 1318 aa12.63□□□□□ -0.39
SYNE2-215ENST00000554997 ANKRD31Q8N7Z5 1873 aa12.63□□□□□ -0.39
SYNE2-215ENST00000554997 KIF13BQ9NQT8 1826 aa12.63□□□□□ -0.39
SYNE2-215ENST00000554997 ERC1Q8IUD2 1116 aa12.63□□□□□ -0.39
SYNE2-215ENST00000554997 SIL1Q9H173 461 aa12.63□□□□□ -0.39
SYNE2-215ENST00000554997 LAMB2P55268 1798 aa12.62□□□□□ -0.39
SYNE2-215ENST00000554997 C21orf2O43822 256 aa12.62□□□□□ -0.39
SYNE2-215ENST00000554997 SASH1O94885 1247 aa12.62□□□□□ -0.39
SYNE2-215ENST00000554997 CHRNDQ07001 517 aa12.62□□□□□ -0.39
SYNE2-215ENST00000554997 SOGA3Q5TF21 947 aa12.62□□□□□ -0.39
SYNE2-215ENST00000554997 SMC5Q8IY18 1101 aa12.62□□□□□ -0.39
SYNE2-215ENST00000554997 CCDC136Q96JN2 1154 aa12.62□□□□□ -0.39
SYNE2-215ENST00000554997 PODXL2Q9NZ53 605 aa12.62□□□□□ -0.39
SYNE2-215ENST00000554997 CEP126Q9P2H0 1117 aa12.62□□□□□ -0.39
SYNE2-215ENST00000554997 EXOC6BQ9Y2D4 811 aa12.62□□□□□ -0.39
SYNE2-215ENST00000554997 PDE8BO95263 885 aa12.61□□□□□ -0.39
SYNE2-215ENST00000554997 OS9Q13438 667 aaPredicted RBP12.61□□□□□ -0.39
SYNE2-215ENST00000554997 METTL24Q5JXM2 366 aa12.61□□□□□ -0.39
SYNE2-215ENST00000554997 RTKN2Q8IZC4 609 aa12.61□□□□□ -0.39
SYNE2-215ENST00000554997 MPNDQ8N594 471 aa12.61□□□□□ -0.39
SYNE2-215ENST00000554997 RHPN1Q8TCX5 695 aa12.61□□□□□ -0.39
SYNE2-215ENST00000554997 NSFL1CQ9UNZ2 370 aaKnown RBP12.61□□□□□ -0.39
SYNE2-215ENST00000554997 BCS1LQ9Y276 419 aa12.61□□□□□ -0.39
SYNE2-215ENST00000554997 LEMD3Q9Y2U8 911 aa12.61□□□□□ -0.39
SYNE2-215ENST00000554997 TAF5LO75529 589 aa12.6□□□□□ -0.39
SYNE2-215ENST00000554997 GPSM2P81274 684 aa12.6□□□□□ -0.39
SYNE2-215ENST00000554997 TFCP2Q12800 502 aa12.6□□□□□ -0.39
SYNE2-215ENST00000554997 VGLL2Q8N8G2 317 aa12.6□□□□□ -0.39
SYNE2-215ENST00000554997 HELBQ8NG08 1087 aaPredicted RBP12.6□□□□□ -0.39
SYNE2-215ENST00000554997 KIF1BPQ96EK5 621 aa12.6□□□□□ -0.39
SYNE2-215ENST00000554997 GPR108Q9NPR9 543 aa12.6□□□□□ -0.39
SYNE2-215ENST00000554997 ANKIB1Q9P2G1 1089 aa12.6□□□□□ -0.39
SYNE2-215ENST00000554997 ZNF219Q9P2Y4 722 aaPredicted RBP12.6□□□□□ -0.39
SYNE2-215ENST00000554997 AKAP2Q9Y2D5 859 aa12.6□□□□□ -0.39
SYNE2-215ENST00000554997 ATP2B4P23634 1241 aa12.59□□□□□ -0.39
SYNE2-215ENST00000554997 UBE4AQ14139 1066 aa12.59□□□□□ -0.39
SYNE2-215ENST00000554997 CCDC93Q567U6 631 aa12.59□□□□□ -0.39
SYNE2-215ENST00000554997 OLFM4Q6UX06 510 aa12.59□□□□□ -0.39
SYNE2-215ENST00000554997 DPP8Q6V1X1 898 aaPredicted RBP12.59□□□□□ -0.39
SYNE2-215ENST00000554997 RTFDC1Q9BY42 306 aaPredicted RBP12.59□□□□□ -0.39
SYNE2-215ENST00000554997 LRRCC1Q9C099 1032 aa12.59□□□□□ -0.39
SYNE2-215ENST00000554997 XDHP47989 1333 aa12.59□□□□□ -0.39
SYNE2-215ENST00000554997 APBB1O00213 710 aa12.58□□□□□ -0.4
SYNE2-215ENST00000554997 ANKRD45Q5TZF3 282 aa12.58□□□□□ -0.4
SYNE2-215ENST00000554997 B4GALNT3Q6L9W6 998 aa12.58□□□□□ -0.4
SYNE2-215ENST00000554997 CENPQQ7L2Z9 268 aaPredicted RBP12.58□□□□□ -0.4
SYNE2-215ENST00000554997 TBC1D16Q8TBP0 767 aa12.58□□□□□ -0.4
SYNE2-215ENST00000554997 POLLQ9UGP5 575 aa12.58□□□□□ -0.4
SYNE2-215ENST00000554997 WWC3Q9ULE0 1092 aa12.58□□□□□ -0.4
SYNE2-215ENST00000554997 GTF3C3Q9Y5Q9 886 aa12.58□□□□□ -0.4
SYNE2-215ENST00000554997 MYH3P11055 1940 aa12.58□□□□□ -0.4
SYNE2-215ENST00000554997 ZNF804BA4D1E1 1349 aa12.58□□□□□ -0.4
SYNE2-215ENST00000554997 COL4A1P02462 1669 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 WTIPA6NIX2 430 aaPredicted RBP12.57□□□□□ -0.4
SYNE2-215ENST00000554997 FGFR2P21802 821 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 TIMM10P62072 90 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 PUM3Q15397 648 aaKnown RBP12.57□□□□□ -0.4
SYNE2-215ENST00000554997 SLC51AQ86UW1 340 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 CLASRPQ8N2M8 674 aaKnown RBP12.57□□□□□ -0.4
SYNE2-215ENST00000554997 SUPT20HQ8NEM7 779 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 LPIN2Q92539 896 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 PSMD1Q99460 953 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 VPS33BQ9H267 617 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 GGA1Q9UJY5 639 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.57□□□□□ -0.4
SYNE2-215ENST00000554997 KDM2BQ8NHM5 1336 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 COL11A2P13942 1736 aaPredicted RBP12.57□□□□□ -0.4
SYNE2-215ENST00000554997 KIAA1551Q9HCM1 1747 aa12.57□□□□□ -0.4
SYNE2-215ENST00000554997 C6orf229H3BNL8 230 aa12.56□□□□□ -0.4
SYNE2-215ENST00000554997 KCNJ4P48050 445 aa12.56□□□□□ -0.4
SYNE2-215ENST00000554997 NUCB1Q02818 461 aa12.56□□□□□ -0.4
SYNE2-215ENST00000554997 TNNI3KQ59H18 835 aa12.56□□□□□ -0.4
SYNE2-215ENST00000554997 C15orf52Q6ZUT6 534 aaKnown RBP12.56□□□□□ -0.4
SYNE2-215ENST00000554997 EAF2Q96CJ1 260 aaPredicted RBP12.56□□□□□ -0.4
SYNE2-215ENST00000554997 ZBTB47Q9UFB7 747 aaPredicted RBP12.56□□□□□ -0.4
SYNE2-215ENST00000554997 FPGT-TNNI3KV9GXZ4 949 aa12.56□□□□□ -0.4
SYNE2-215ENST00000554997 A0A1B0GUL7 405 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 SNAP23O00161 211 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 SMARCA5O60264 1052 aaPredicted RBP12.55□□□□□ -0.4
SYNE2-215ENST00000554997 GRIN3BO60391 1043 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 UFL1O94874 794 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 IFIT1P09914 478 aaKnown RBP12.55□□□□□ -0.4
SYNE2-215ENST00000554997 YBX3P16989 372 aaKnown RBP eCLIP12.55□□□□□ -0.4
SYNE2-215ENST00000554997 FKBP4Q02790 459 aaKnown RBP eCLIP12.55□□□□□ -0.4
SYNE2-215ENST00000554997 GPR162Q16538 588 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 ATP2B3Q16720 1220 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 WASHC4Q2M389 1173 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 ARHGAP27Q6ZUM4 889 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 CHD1LQ86WJ1 897 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 NEUROD6Q96NK8 337 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 EYA3Q99504 573 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 ZC3H12CQ9C0D7 883 aaKnown RBP12.55□□□□□ -0.4
SYNE2-215ENST00000554997 IL1RAPL2Q9NP60 686 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 SLX4Q8IY92 1834 aa12.55□□□□□ -0.4
SYNE2-215ENST00000554997 SNED1Q8TER0 1413 aa12.54□□□□□ -0.4
SYNE2-215ENST00000554997 DLEC1Q9Y238 1755 aa12.54□□□□□ -0.4
SYNE2-215ENST00000554997 SLC5A1P13866 664 aa12.54□□□□□ -0.4
SYNE2-215ENST00000554997 PELP1Q8IZL8 1130 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms