RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 RGMBQ6NW40 437 aa14.75□□□□□ -0.05
VPS33B-204ENST00000554660 TMC4Q7Z404 712 aa14.75□□□□□ -0.05
VPS33B-204ENST00000554660 DPF2Q92785 391 aa14.75□□□□□ -0.05
VPS33B-204ENST00000554660 FAM89AQ96GI7 184 aa14.75□□□□□ -0.05
VPS33B-204ENST00000554660 GBA2Q9HCG7 927 aaPredicted RBP14.75□□□□□ -0.05
VPS33B-204ENST00000554660 KCNQ5Q9NR82 932 aa14.75□□□□□ -0.05
VPS33B-204ENST00000554660 POLLQ9UGP5 575 aa14.75□□□□□ -0.05
VPS33B-204ENST00000554660 ATP5J2-PTCD1G3V325 749 aa14.74□□□□□ -0.05
VPS33B-204ENST00000554660 TMPOP42166 694 aaKnown RBP14.74□□□□□ -0.05
VPS33B-204ENST00000554660 KIF4BQ2VIQ3 1234 aa14.74□□□□□ -0.05
VPS33B-204ENST00000554660 FAM9BQ8IZU0 186 aa14.74□□□□□ -0.05
VPS33B-204ENST00000554660 BABAM1Q9NWV8 329 aa14.74□□□□□ -0.05
VPS33B-204ENST00000554660 GGA3Q9NZ52 723 aa14.74□□□□□ -0.05
VPS33B-204ENST00000554660 ASTN2O75129 1339 aaPredicted RBP14.73□□□□□ -0.05
VPS33B-204ENST00000554660 ZNF157P51786 506 aaPredicted RBP14.73□□□□□ -0.05
VPS33B-204ENST00000554660 SOX10P56693 466 aa14.73□□□□□ -0.05
VPS33B-204ENST00000554660 KIF23Q02241 960 aaPredicted RBP14.73□□□□□ -0.05
VPS33B-204ENST00000554660 LMOD3Q0VAK6 560 aa14.73□□□□□ -0.05
VPS33B-204ENST00000554660 DCPSQ96C86 337 aaKnown RBP14.73□□□□□ -0.05
VPS33B-204ENST00000554660 LAS1LQ9Y4W2 734 aaKnown RBP14.73□□□□□ -0.05
VPS33B-204ENST00000554660 SCN9AQ15858 1988 aa14.73□□□□□ -0.05
VPS33B-204ENST00000554660 RPS12P25398 132 aaKnown RBP14.72□□□□□ -0.05
VPS33B-204ENST00000554660 SF3B3Q15393 1217 aaKnown RBP14.72□□□□□ -0.05
VPS33B-204ENST00000554660 NEUROD2Q15784 382 aa14.72□□□□□ -0.05
VPS33B-204ENST00000554660 HDGFL1Q5TGJ6 251 aa14.72□□□□□ -0.05
VPS33B-204ENST00000554660 CCDC146Q8IYE0 955 aa14.72□□□□□ -0.05
VPS33B-204ENST00000554660 C2orf69Q8N8R5 385 aa14.72□□□□□ -0.05
VPS33B-204ENST00000554660 PLBD2Q8NHP8 589 aa14.72□□□□□ -0.05
VPS33B-204ENST00000554660 ISCA1Q9BUE6 129 aa14.72□□□□□ -0.05
VPS33B-204ENST00000554660 SAGE1Q9NXZ1 904 aa14.72□□□□□ -0.05
VPS33B-204ENST00000554660 TRPA1O75762 1119 aa14.71□□□□□ -0.05
VPS33B-204ENST00000554660 SLC10A3P09131 477 aa14.71□□□□□ -0.05
VPS33B-204ENST00000554660 TBC1D16Q8TBP0 767 aa14.71□□□□□ -0.05
VPS33B-204ENST00000554660 EYA3Q99504 573 aa14.71□□□□□ -0.05
VPS33B-204ENST00000554660 RNF186Q9NXI6 227 aa14.71□□□□□ -0.05
VPS33B-204ENST00000554660 CHL1O00533 1208 aa14.7□□□□□ -0.06
VPS33B-204ENST00000554660 ANKRD13DQ6ZTN6 518 aa14.7□□□□□ -0.06
VPS33B-204ENST00000554660 SULF1Q8IWU6 871 aa14.7□□□□□ -0.06
VPS33B-204ENST00000554660 CCDC102AQ96A19 550 aa14.7□□□□□ -0.06
VPS33B-204ENST00000554660 CDCA5Q96FF9 252 aa14.7□□□□□ -0.06
VPS33B-204ENST00000554660 POLR2AP24928 1970 aaKnown RBP14.69□□□□□ -0.06
VPS33B-204ENST00000554660 IRS4O14654 1257 aaPredicted RBP14.69□□□□□ -0.06
VPS33B-204ENST00000554660 UFL1O94874 794 aa14.69□□□□□ -0.06
VPS33B-204ENST00000554660 SEC31BQ9NQW1 1179 aa14.69□□□□□ -0.06
VPS33B-204ENST00000554660 ANGEL2Q5VTE6 544 aaKnown RBP14.68□□□□□ -0.06
VPS33B-204ENST00000554660 RASAL3Q86YV0 1011 aa14.68□□□□□ -0.06
VPS33B-204ENST00000554660 DBF4Q9UBU7 674 aaPredicted RBP14.68□□□□□ -0.06
VPS33B-204ENST00000554660 PAPPA2Q9BXP8 1791 aa14.68□□□□□ -0.06
VPS33B-204ENST00000554660 AKAP11Q9UKA4 1901 aa14.67□□□□□ -0.06
VPS33B-204ENST00000554660 VIL1P09327 827 aaKnown RBP14.67□□□□□ -0.06
VPS33B-204ENST00000554660 RPS8P62241 208 aaKnown RBP14.67□□□□□ -0.06
VPS33B-204ENST00000554660 CSRNP1Q96S65 589 aa14.67□□□□□ -0.06
VPS33B-204ENST00000554660 ZC3H12CQ9C0D7 883 aaKnown RBP14.67□□□□□ -0.06
VPS33B-204ENST00000554660 SCAF8Q9UPN6 1271 aaKnown RBP14.67□□□□□ -0.06
VPS33B-204ENST00000554660 TRIM35Q9UPQ4 493 aa14.67□□□□□ -0.06
VPS33B-204ENST00000554660 ZNF609O15014 1411 aa14.66□□□□□ -0.06
VPS33B-204ENST00000554660 PSME4Q14997 1843 aa14.66□□□□□ -0.06
VPS33B-204ENST00000554660 G3V3G9 751 aa14.66□□□□□ -0.06
VPS33B-204ENST00000554660 DCAF8Q5TAQ9 597 aa14.66□□□□□ -0.06
VPS33B-204ENST00000554660 CCDC85AQ96PX6 553 aaPredicted RBP14.66□□□□□ -0.06
VPS33B-204ENST00000554660 PODXL2Q9NZ53 605 aa14.66□□□□□ -0.06
VPS33B-204ENST00000554660 ANKIB1Q9P2G1 1089 aa14.66□□□□□ -0.06
VPS33B-204ENST00000554660 HOXB7P09629 217 aa14.65□□□□□ -0.06
VPS33B-204ENST00000554660 ZNF280AP59817 542 aaPredicted RBP14.65□□□□□ -0.06
VPS33B-204ENST00000554660 SCARF1Q14162 830 aa14.65□□□□□ -0.06
VPS33B-204ENST00000554660 RSBN1LQ6PCB5 846 aaPredicted RBP14.65□□□□□ -0.06
VPS33B-204ENST00000554660 MOB2Q70IA6 237 aa14.65□□□□□ -0.06
VPS33B-204ENST00000554660 CTU1Q7Z7A3 348 aaKnown RBP14.65□□□□□ -0.06
VPS33B-204ENST00000554660 HYPKQ9NX55 129 aa14.65□□□□□ -0.06
VPS33B-204ENST00000554660 GGA1Q9UJY5 639 aa14.65□□□□□ -0.06
VPS33B-204ENST00000554660 DUSP27Q5VZP5 1158 aa14.64□□□□□ -0.07
VPS33B-204ENST00000554660 RIC3Q7Z5B4 369 aa14.64□□□□□ -0.07
VPS33B-204ENST00000554660 ZBTB38Q8NAP3 1195 aaPredicted RBP14.64□□□□□ -0.07
VPS33B-204ENST00000554660 JARID2Q92833 1246 aaPredicted RBP14.64□□□□□ -0.07
VPS33B-204ENST00000554660 GOLGA2Q08379 1002 aa14.63□□□□□ -0.07
VPS33B-204ENST00000554660 TRIM28Q13263 835 aaKnown RBP14.63□□□□□ -0.07
VPS33B-204ENST00000554660 AGBL3Q8NEM8 1001 aa14.63□□□□□ -0.07
VPS33B-204ENST00000554660 MYD88Q99836 296 aa14.63□□□□□ -0.07
VPS33B-204ENST00000554660 PHAXQ9H814 394 aaKnown RBP14.63□□□□□ -0.07
VPS33B-204ENST00000554660 MYOZ2Q9NPC6 264 aa14.63□□□□□ -0.07
VPS33B-204ENST00000554660 MBIPQ9NS73 344 aa14.63□□□□□ -0.07
VPS33B-204ENST00000554660 PDE4DIPQ5VU43 2346 aa14.62□□□□□ -0.07
VPS33B-204ENST00000554660 PRAMEF18Q5VWM3 479 aa14.62□□□□□ -0.07
VPS33B-204ENST00000554660 RUNDC1Q96C34 613 aa14.62□□□□□ -0.07
VPS33B-204ENST00000554660 HPS5Q9UPZ3 1129 aa14.62□□□□□ -0.07
VPS33B-204ENST00000554660 XDHP47989 1333 aa14.62□□□□□ -0.07
VPS33B-204ENST00000554660 ZNF646O15015 1829 aaPredicted RBP14.62□□□□□ -0.07
VPS33B-204ENST00000554660 SPEF2Q9C093 1822 aa14.62□□□□□ -0.07
VPS33B-204ENST00000554660 WTIPA6NIX2 430 aaPredicted RBP14.61□□□□□ -0.07
VPS33B-204ENST00000554660 USP17L8P0C7I0 530 aa14.61□□□□□ -0.07
VPS33B-204ENST00000554660 FKBP1BP68106 108 aa14.61□□□□□ -0.07
VPS33B-204ENST00000554660 CCDC152Q4G0S7 254 aa14.61□□□□□ -0.07
VPS33B-204ENST00000554660 GMLQ99445 158 aa14.61□□□□□ -0.07
VPS33B-204ENST00000554660 PCDH10Q9P2E7 1040 aa14.61□□□□□ -0.07
VPS33B-204ENST00000554660 PITPNM2Q9BZ72 1349 aa14.61□□□□□ -0.07
VPS33B-204ENST00000554660 UBE2Q2LH0YL09 131 aa14.6□□□□□ -0.07
VPS33B-204ENST00000554660 TBC1D8O95759 1140 aa14.6□□□□□ -0.07
VPS33B-204ENST00000554660 WDR43Q15061 677 aaKnown RBP eCLIP14.6□□□□□ -0.07
VPS33B-204ENST00000554660 ZNF296Q8WUU4 475 aaPredicted RBP14.6□□□□□ -0.07
VPS33B-204ENST00000554660 MXD3Q9BW11 206 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms