RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 ERBB4Q15303 1308 aa18.24■□□□□ 0.51
SHMT2-208ENST00000553868 MVPQ14764 893 aaKnown RBP18.24■□□□□ 0.51
SHMT2-208ENST00000553868 HLFQ16534 295 aa18.24■□□□□ 0.51
SHMT2-208ENST00000553868 CCDC102AQ96A19 550 aa18.24■□□□□ 0.51
SHMT2-208ENST00000553868 GBA2Q9HCG7 927 aaPredicted RBP18.24■□□□□ 0.51
SHMT2-208ENST00000553868 HYPKQ9NX55 129 aa18.24■□□□□ 0.51
SHMT2-208ENST00000553868 CHPF2Q9P2E5 772 aa18.24■□□□□ 0.51
SHMT2-208ENST00000553868 POLR2AP24928 1970 aaKnown RBP18.23■□□□□ 0.51
SHMT2-208ENST00000553868 DLL1O00548 723 aa18.23■□□□□ 0.51
SHMT2-208ENST00000553868 RAD17O75943 681 aa18.23■□□□□ 0.51
SHMT2-208ENST00000553868 FLIIQ13045 1269 aa18.23■□□□□ 0.51
SHMT2-208ENST00000553868 HDAC9Q9UKV0 1011 aa18.23■□□□□ 0.51
SHMT2-208ENST00000553868 ZNRF3Q9ULT6 936 aa18.23■□□□□ 0.51
SHMT2-208ENST00000553868 DDX19BQ9UMR2 479 aa18.23■□□□□ 0.51
SHMT2-208ENST00000553868 COG6Q9Y2V7 657 aa18.23■□□□□ 0.51
SHMT2-208ENST00000553868 ABCC4O15439 1325 aa18.23■□□□□ 0.51
SHMT2-208ENST00000553868 CACNA1FO60840 1977 aa18.22■□□□□ 0.51
SHMT2-208ENST00000553868 ADM5C9JUS6 153 aa18.22■□□□□ 0.51
SHMT2-208ENST00000553868 SLC10A3P09131 477 aa18.22■□□□□ 0.51
SHMT2-208ENST00000553868 RLBP1P12271 317 aa18.22■□□□□ 0.51
SHMT2-208ENST00000553868 ZNF296Q8WUU4 475 aaPredicted RBP18.22■□□□□ 0.51
SHMT2-208ENST00000553868 CNOT7Q9UIV1 285 aaKnown RBP18.22■□□□□ 0.51
SHMT2-208ENST00000553868 BRCA2P51587 3418 aa18.21■□□□□ 0.51
SHMT2-208ENST00000553868 PPEF1O14829 653 aaPredicted RBP18.21■□□□□ 0.51
SHMT2-208ENST00000553868 TBC1D8O95759 1140 aa18.21■□□□□ 0.51
SHMT2-208ENST00000553868 FKBP5Q13451 457 aaPredicted RBP18.21■□□□□ 0.51
SHMT2-208ENST00000553868 PKN2Q16513 984 aaKnown RBP18.21■□□□□ 0.51
SHMT2-208ENST00000553868 ITPRIPQ8IWB1 547 aa18.21■□□□□ 0.51
SHMT2-208ENST00000553868 C2orf69Q8N8R5 385 aa18.21■□□□□ 0.51
SHMT2-208ENST00000553868 RPGRQ92834 1020 aaKnown RBP18.21■□□□□ 0.51
SHMT2-208ENST00000553868 LAMB4A4D0S4 1761 aa18.2■□□□□ 0.5
SHMT2-208ENST00000553868 G2E3Q7L622 706 aa18.2■□□□□ 0.5
SHMT2-208ENST00000553868 SAMD7Q7Z3H4 446 aa18.2■□□□□ 0.5
SHMT2-208ENST00000553868 KRT26Q7Z3Y9 468 aa18.2■□□□□ 0.5
SHMT2-208ENST00000553868 TMEM57Q8N5G2 664 aa18.2■□□□□ 0.5
SHMT2-208ENST00000553868 CCDC136Q96JN2 1154 aa18.2■□□□□ 0.5
SHMT2-208ENST00000553868 TNNQ9UQP3 1299 aa18.2■□□□□ 0.5
SHMT2-208ENST00000553868 CENPFP49454 3210 aa18.2■□□□□ 0.5
SHMT2-208ENST00000553868 NBPF26B4DH59 902 aa18.19■□□□□ 0.5
SHMT2-208ENST00000553868 DDX58O95786 925 aaKnown RBP18.19■□□□□ 0.5
SHMT2-208ENST00000553868 EGFRP00533 1210 aa18.19■□□□□ 0.5
SHMT2-208ENST00000553868 HOXA10P31260 410 aaPredicted RBP18.19■□□□□ 0.5
SHMT2-208ENST00000553868 NBPF10Q6P3W6 841 aaKnown RBP18.19■□□□□ 0.5
SHMT2-208ENST00000553868 C3orf67Q6ZVT6 689 aa18.19■□□□□ 0.5
SHMT2-208ENST00000553868 MICALL2Q8IY33 904 aa18.19■□□□□ 0.5
SHMT2-208ENST00000553868 POTEFA5A3E0 1075 aa18.18■□□□□ 0.5
SHMT2-208ENST00000553868 CCT4P50991 539 aaKnown RBP18.18■□□□□ 0.5
SHMT2-208ENST00000553868 INTS3Q68E01 1043 aaKnown RBP18.18■□□□□ 0.5
SHMT2-208ENST00000553868 ZBTB12Q9Y330 459 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-208ENST00000553868 HTTP42858 3142 aa18.17■□□□□ 0.5
SHMT2-208ENST00000553868 TBC1D10BQ4KMP7 808 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-208ENST00000553868 GRIPAP1Q4V328 841 aa18.17■□□□□ 0.5
SHMT2-208ENST00000553868 FBXO46Q6PJ61 603 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-208ENST00000553868 COLQQ9Y215 455 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-208ENST00000553868 H7C1D1 291 aa18.16■□□□□ 0.5
SHMT2-208ENST00000553868 RASAL3Q86YV0 1011 aa18.16■□□□□ 0.5
SHMT2-208ENST00000553868 PHAXQ9H814 394 aaKnown RBP18.16■□□□□ 0.5
SHMT2-208ENST00000553868 CDHR2Q9BYE9 1310 aa18.16■□□□□ 0.5
SHMT2-208ENST00000553868 TRIOBPQ9H2D6 2365 aa18.16■□□□□ 0.5
SHMT2-208ENST00000553868 RIC1Q4ADV7 1423 aa18.15■□□□□ 0.5
SHMT2-208ENST00000553868 YDJCA8MPS7 323 aa18.15■□□□□ 0.5
SHMT2-208ENST00000553868 PDIA6Q15084 440 aa18.15■□□□□ 0.5
SHMT2-208ENST00000553868 RBM17Q96I25 401 aaKnown RBP18.15■□□□□ 0.5
SHMT2-208ENST00000553868 CRAMP1Q96RY5 1269 aa18.15■□□□□ 0.5
SHMT2-208ENST00000553868 MYL6BP14649 208 aa18.14■□□□□ 0.49
SHMT2-208ENST00000553868 TNIP1Q15025 636 aa18.14■□□□□ 0.49
SHMT2-208ENST00000553868 PROSER3Q2NL68 480 aa18.14■□□□□ 0.49
SHMT2-208ENST00000553868 RBM26Q5T8P6 1007 aaKnown RBP18.14■□□□□ 0.49
SHMT2-208ENST00000553868 SLC4A10Q6U841 1118 aa18.14■□□□□ 0.49
SHMT2-208ENST00000553868 A0A0C4DFX4 3053 aa18.14■□□□□ 0.49
SHMT2-208ENST00000553868 ANXA1P04083 346 aa18.13■□□□□ 0.49
SHMT2-208ENST00000553868 B4GALNT3Q6L9W6 998 aa18.13■□□□□ 0.49
SHMT2-208ENST00000553868 KSR2Q6VAB6 950 aa18.13■□□□□ 0.49
SHMT2-208ENST00000553868 DNAAF4Q8WXU2 420 aa18.13■□□□□ 0.49
SHMT2-208ENST00000553868 NYXQ9GZU5 481 aa18.13■□□□□ 0.49
SHMT2-208ENST00000553868 ATP6V0A2Q9Y487 856 aa18.13■□□□□ 0.49
SHMT2-208ENST00000553868 F6X3S4 739 aa18.12■□□□□ 0.49
SHMT2-208ENST00000553868 GPTP24298 496 aa18.12■□□□□ 0.49
SHMT2-208ENST00000553868 VPS33BQ9H267 617 aa18.12■□□□□ 0.49
SHMT2-208ENST00000553868 PI4KAP2A4QPH2 592 aa18.11■□□□□ 0.49
SHMT2-208ENST00000553868 GPR25O00155 361 aa18.11■□□□□ 0.49
SHMT2-208ENST00000553868 KIAA2012Q0VF49 1180 aa18.11■□□□□ 0.49
SHMT2-208ENST00000553868 COPS6Q7L5N1 327 aa18.11■□□□□ 0.49
SHMT2-208ENST00000553868 PI4KAP1Q8N8J0 262 aa18.11■□□□□ 0.49
SHMT2-208ENST00000553868 SLC17A8Q8NDX2 589 aa18.11■□□□□ 0.49
SHMT2-208ENST00000553868 XAGE3Q8WTP9 111 aa18.11■□□□□ 0.49
SHMT2-208ENST00000553868 DCPSQ96C86 337 aaKnown RBP18.11■□□□□ 0.49
SHMT2-208ENST00000553868 RTFDC1Q9BY42 306 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-208ENST00000553868 ASTN2O75129 1339 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-208ENST00000553868 PAPPA2Q9BXP8 1791 aa18.11■□□□□ 0.49
SHMT2-208ENST00000553868 KIAA0100Q14667 2235 aaKnown RBP18.11■□□□□ 0.49
SHMT2-208ENST00000553868 UBN2Q6ZU65 1347 aa18.1■□□□□ 0.49
SHMT2-208ENST00000553868 ZBTB7BO15156 539 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-208ENST00000553868 AIMP1Q12904 312 aaKnown RBP18.1■□□□□ 0.49
SHMT2-208ENST00000553868 SUSD4Q5VX71 490 aa18.1■□□□□ 0.49
SHMT2-208ENST00000553868 DPP8Q6V1X1 898 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-208ENST00000553868 RIC3Q7Z5B4 369 aa18.1■□□□□ 0.49
SHMT2-208ENST00000553868 SRCIN1Q9C0H9 1055 aa18.1■□□□□ 0.49
SHMT2-208ENST00000553868 R3HDMLQ9H3Y0 253 aa18.1■□□□□ 0.49
SHMT2-208ENST00000553868 ZBTB40Q9NUA8 1239 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms