RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 POLIQ9UNA4 740 aa6.29□□□□□ -1.4
VRK1-202ENST00000553683 SOWAHDA6NJG2 315 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 NDUFB5O43674 189 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 GHRHP01286 108 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 NEFLP07196 543 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 AFF1P51825 1210 aaKnown RBP6.28□□□□□ -1.4
VRK1-202ENST00000553683 TBC1D8BQ0IIM8 1120 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 ELMSAN1Q6PJG2 1045 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 DTWD1Q8N5C7 304 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 TRIM11Q96F44 468 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 DCAF5Q96JK2 942 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 GGNBP2Q9H3C7 697 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 JPH1Q9HDC5 661 aaPredicted RBP6.28□□□□□ -1.4
VRK1-202ENST00000553683 BRPF3Q9ULD4 1205 aa6.28□□□□□ -1.4
VRK1-202ENST00000553683 IGHA1P01876 353 aa6.27□□□□□ -1.41
VRK1-202ENST00000553683 SPATA31C1P0DKV0 1188 aa6.27□□□□□ -1.41
VRK1-202ENST00000553683 CPB1P15086 417 aa6.27□□□□□ -1.41
VRK1-202ENST00000553683 PERM1Q5SV97 790 aa6.27□□□□□ -1.41
VRK1-202ENST00000553683 SNX29Q8TEQ0 813 aa6.27□□□□□ -1.41
VRK1-202ENST00000553683 SPACA7Q96KW9 195 aa6.27□□□□□ -1.41
VRK1-202ENST00000553683 PLVAPQ9BX97 442 aa6.27□□□□□ -1.41
VRK1-202ENST00000553683 COL8A1P27658 744 aa6.26□□□□□ -1.41
VRK1-202ENST00000553683 GRIK5Q16478 980 aa6.26□□□□□ -1.41
VRK1-202ENST00000553683 C8orf34Q49A92 452 aa6.26□□□□□ -1.41
VRK1-202ENST00000553683 PRRT3Q5FWE3 981 aa6.26□□□□□ -1.41
VRK1-202ENST00000553683 DCAF11Q8TEB1 546 aa6.26□□□□□ -1.41
VRK1-202ENST00000553683 RBCK1Q9BYM8 510 aa6.26□□□□□ -1.41
VRK1-202ENST00000553683 MUC3BQ9H195 1237 aa6.26□□□□□ -1.41
VRK1-202ENST00000553683 SRA1Q9HD15 236 aaKnown RBP6.26□□□□□ -1.41
VRK1-202ENST00000553683 ANO2Q9NQ90 1003 aa6.26□□□□□ -1.41
VRK1-202ENST00000553683 TMEM63CQ9P1W3 806 aa6.26□□□□□ -1.41
VRK1-202ENST00000553683 TNFRSF21O75509 655 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 PDIA4P13667 645 aaKnown RBP6.25□□□□□ -1.41
VRK1-202ENST00000553683 EIF2AK2P19525 551 aaKnown RBP6.25□□□□□ -1.41
VRK1-202ENST00000553683 CES1P23141 567 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 TRIM28Q13263 835 aaKnown RBP6.25□□□□□ -1.41
VRK1-202ENST00000553683 MSL1Q68DK7 614 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 MAP4K3Q8IVH8 894 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 KCTD17Q8N5Z5 321 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 CEP120Q8N960 986 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 PLD4Q96BZ4 506 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 FAM129BQ96TA1 746 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 SMG9Q9H0W8 520 aaKnown RBP6.25□□□□□ -1.41
VRK1-202ENST00000553683 SUV39H2Q9H5I1 410 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 CCDC87Q9NVE4 849 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 SALL4Q9UJQ4 1053 aa6.25□□□□□ -1.41
VRK1-202ENST00000553683 SMNDC1O75940 238 aaKnown RBP eCLIP6.24□□□□□ -1.41
VRK1-202ENST00000553683 RAC1P63000 192 aa6.24□□□□□ -1.41
VRK1-202ENST00000553683 NUDT8Q8WV74 236 aa6.24□□□□□ -1.41
VRK1-202ENST00000553683 DMRTB1Q96MA1 342 aa6.24□□□□□ -1.41
VRK1-202ENST00000553683 NSUN5Q96P11 429 aaKnown RBP6.24□□□□□ -1.41
VRK1-202ENST00000553683 NACC1Q96RE7 527 aa6.24□□□□□ -1.41
VRK1-202ENST00000553683 CNTN3Q9P232 1028 aa6.24□□□□□ -1.41
VRK1-202ENST00000553683 J3QW42 95 aa6.23□□□□□ -1.41
VRK1-202ENST00000553683 PHACTR2O75167 634 aa6.23□□□□□ -1.41
VRK1-202ENST00000553683 EDN3P14138 238 aa6.23□□□□□ -1.41
VRK1-202ENST00000553683 MLLT1Q03111 559 aaPredicted RBP6.23□□□□□ -1.41
VRK1-202ENST00000553683 TRAPPC3LQ5T215 181 aa6.23□□□□□ -1.41
VRK1-202ENST00000553683 C8orf86Q6ZUL3 223 aa6.23□□□□□ -1.41
VRK1-202ENST00000553683 NCAPG2Q86XI2 1143 aa6.23□□□□□ -1.41
VRK1-202ENST00000553683 C1orf127Q8N9H9 656 aa6.23□□□□□ -1.41
VRK1-202ENST00000553683 ALKBH8Q96BT7 664 aaKnown RBP6.23□□□□□ -1.41
VRK1-202ENST00000553683 PBX4Q9BYU1 374 aa6.23□□□□□ -1.41
VRK1-202ENST00000553683 CHRDQ9H2X0 955 aa6.23□□□□□ -1.41
VRK1-202ENST00000553683 A0A0A0MRY4 1105 aa6.22□□□□□ -1.41
VRK1-202ENST00000553683 ELNP15502 786 aa6.22□□□□□ -1.41
VRK1-202ENST00000553683 COL13A1Q5TAT6 717 aaPredicted RBP6.22□□□□□ -1.41
VRK1-202ENST00000553683 HFE2Q6ZVN8 426 aa6.22□□□□□ -1.41
VRK1-202ENST00000553683 WFDC8Q8IUA0 241 aa6.22□□□□□ -1.41
VRK1-202ENST00000553683 DNAJC25Q9H1X3 360 aa6.22□□□□□ -1.41
VRK1-202ENST00000553683 ZFYVE28Q9HCC9 887 aa6.22□□□□□ -1.41
VRK1-202ENST00000553683 DCTN4Q9UJW0 460 aa6.22□□□□□ -1.41
VRK1-202ENST00000553683 AMOTL2Q9Y2J4 779 aa6.22□□□□□ -1.41
VRK1-202ENST00000553683 KRBA1A5PL33 1030 aa6.21□□□□□ -1.42
VRK1-202ENST00000553683 CYP2E1P05181 493 aaPredicted RBP6.21□□□□□ -1.42
VRK1-202ENST00000553683 FBXO11Q86XK2 927 aa6.21□□□□□ -1.42
VRK1-202ENST00000553683 ADAM19Q9H013 955 aa6.21□□□□□ -1.42
VRK1-202ENST00000553683 IVNS1ABPQ9Y6Y0 642 aa6.21□□□□□ -1.42
VRK1-202ENST00000553683 C9orf172C9J069 976 aa6.2□□□□□ -1.42
VRK1-202ENST00000553683 EIF4EBP3O60516 100 aaPredicted RBP6.2□□□□□ -1.42
VRK1-202ENST00000553683 APBA3O96018 575 aa6.2□□□□□ -1.42
VRK1-202ENST00000553683 IGHA2P01877 340 aa6.2□□□□□ -1.42
VRK1-202ENST00000553683 BAG6P46379 1132 aa6.2□□□□□ -1.42
VRK1-202ENST00000553683 NRG1Q02297 640 aaPredicted RBP6.2□□□□□ -1.42
VRK1-202ENST00000553683 PLA2G4EQ3MJ16 856 aa6.2□□□□□ -1.42
VRK1-202ENST00000553683 FMR1NBQ8N0W7 255 aaPredicted RBP6.2□□□□□ -1.42
VRK1-202ENST00000553683 TMEM102Q8N9M5 508 aaPredicted RBP6.2□□□□□ -1.42
VRK1-202ENST00000553683 DZANK1Q9NVP4 752 aa6.2□□□□□ -1.42
VRK1-202ENST00000553683 A6NHS1 94 aa6.19□□□□□ -1.42
VRK1-202ENST00000553683 NFKBIEO00221 500 aa6.19□□□□□ -1.42
VRK1-202ENST00000553683 PTPRAP18433 802 aa6.19□□□□□ -1.42
VRK1-202ENST00000553683 GALNT12Q8IXK2 581 aa6.19□□□□□ -1.42
VRK1-202ENST00000553683 DMRTC2Q8IXT2 367 aaPredicted RBP6.19□□□□□ -1.42
VRK1-202ENST00000553683 WNT8BQ93098 351 aa6.19□□□□□ -1.42
VRK1-202ENST00000553683 LENG1Q96BZ8 264 aaPredicted RBP6.19□□□□□ -1.42
VRK1-202ENST00000553683 RASSF4Q9H2L5 321 aa6.19□□□□□ -1.42
VRK1-202ENST00000553683 BIN2Q9UBW5 565 aaPredicted RBP6.19□□□□□ -1.42
VRK1-202ENST00000553683 PPME1Q9Y570 386 aa6.19□□□□□ -1.42
VRK1-202ENST00000553683 FAM177BA6PVY3 158 aa6.18□□□□□ -1.42
VRK1-202ENST00000553683 EREGO14944 169 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms