RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 PNMA8AQ86V59 439 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-204ENST00000553324 NOB1Q9ULX3 412 aaKnown RBP19.35■□□□□ 0.69
SHMT2-204ENST00000553324 G3V3G9 751 aa19.34■□□□□ 0.69
SHMT2-204ENST00000553324 UFL1O94874 794 aa19.34■□□□□ 0.69
SHMT2-204ENST00000553324 CCT4P50991 539 aaKnown RBP19.34■□□□□ 0.69
SHMT2-204ENST00000553324 FAM161AQ3B820 660 aa19.34■□□□□ 0.69
SHMT2-204ENST00000553324 DCAF8Q5TAQ9 597 aa19.34■□□□□ 0.69
SHMT2-204ENST00000553324 LMBR1LQ6UX01 489 aa19.34■□□□□ 0.69
SHMT2-204ENST00000553324 ARHGAP45Q92619 1136 aa19.34■□□□□ 0.69
SHMT2-204ENST00000553324 ANKRD2Q9GZV1 360 aa19.34■□□□□ 0.69
SHMT2-204ENST00000553324 TAF1DQ9H5J8 278 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-204ENST00000553324 CHMP3Q9Y3E7 222 aa19.34■□□□□ 0.69
SHMT2-204ENST00000553324 WDR90Q96KV7 1748 aa19.34■□□□□ 0.69
SHMT2-204ENST00000553324 ZBED9Q6R2W3 1325 aa19.33■□□□□ 0.69
SHMT2-204ENST00000553324 KIF16BQ96L93 1317 aa19.33■□□□□ 0.69
SHMT2-204ENST00000553324 RIMBP2O15034 1052 aa19.33■□□□□ 0.68
SHMT2-204ENST00000553324 IPO8O15397 1037 aaKnown RBP19.33■□□□□ 0.68
SHMT2-204ENST00000553324 CXCL9Q07325 125 aa19.33■□□□□ 0.68
SHMT2-204ENST00000553324 CIAPIN1Q6FI81 312 aa19.33■□□□□ 0.68
SHMT2-204ENST00000553324 LEMD3Q9Y2U8 911 aa19.33■□□□□ 0.68
SHMT2-204ENST00000553324 EPHX2P34913 555 aa19.32■□□□□ 0.68
SHMT2-204ENST00000553324 HDAC5Q9UQL6 1122 aa19.32■□□□□ 0.68
SHMT2-204ENST00000553324 NBPF7P0C2Y1 421 aaPredicted RBP19.31■□□□□ 0.68
SHMT2-204ENST00000553324 APLP1P51693 650 aa19.31■□□□□ 0.68
SHMT2-204ENST00000553324 TAF7LQ5H9L4 462 aa19.31■□□□□ 0.68
SHMT2-204ENST00000553324 LDHDQ86WU2 507 aa19.31■□□□□ 0.68
SHMT2-204ENST00000553324 RAD17O75943 681 aa19.3■□□□□ 0.68
SHMT2-204ENST00000553324 CHADLQ6NUI6 762 aa19.3■□□□□ 0.68
SHMT2-204ENST00000553324 USP44Q9H0E7 712 aa19.3■□□□□ 0.68
SHMT2-204ENST00000553324 TAF1P21675 1872 aa19.3■□□□□ 0.68
SHMT2-204ENST00000553324 LRRC37AA6NMS7 1700 aa19.29■□□□□ 0.68
SHMT2-204ENST00000553324 EPHA10Q5JZY3 1008 aa19.29■□□□□ 0.68
SHMT2-204ENST00000553324 SUCLG2Q96I99 432 aa19.29■□□□□ 0.68
SHMT2-204ENST00000553324 DBNDD1Q9H9R9 158 aa19.29■□□□□ 0.68
SHMT2-204ENST00000553324 COL4A5P29400 1685 aa19.29■□□□□ 0.68
SHMT2-204ENST00000553324 YDJCA8MPS7 323 aa19.28■□□□□ 0.68
SHMT2-204ENST00000553324 ECE2O60344 883 aa19.28■□□□□ 0.68
SHMT2-204ENST00000553324 SCNN1DP51172 638 aa19.28■□□□□ 0.68
SHMT2-204ENST00000553324 DOK7Q18PE1 504 aa19.28■□□□□ 0.68
SHMT2-204ENST00000553324 EAPPQ56P03 285 aaPredicted RBP19.28■□□□□ 0.68
SHMT2-204ENST00000553324 LDHAL6AQ6ZMR3 332 aa19.28■□□□□ 0.68
SHMT2-204ENST00000553324 USP50Q70EL3 339 aaPredicted RBP19.28■□□□□ 0.68
SHMT2-204ENST00000553324 PODNQ7Z5L7 613 aa19.28■□□□□ 0.68
SHMT2-204ENST00000553324 CLEC11AQ9Y240 323 aa19.28■□□□□ 0.68
SHMT2-204ENST00000553324 KCNJ4P48050 445 aa19.27■□□□□ 0.68
SHMT2-204ENST00000553324 CHRNDQ07001 517 aa19.27■□□□□ 0.68
SHMT2-204ENST00000553324 RABL6Q3YEC7 729 aaPredicted RBP19.27■□□□□ 0.68
SHMT2-204ENST00000553324 DPF2Q92785 391 aa19.27■□□□□ 0.68
SHMT2-204ENST00000553324 KAZALD1Q96I82 304 aa19.27■□□□□ 0.68
SHMT2-204ENST00000553324 BICC1Q9H694 974 aaKnown RBP19.27■□□□□ 0.68
SHMT2-204ENST00000553324 ADARB2Q9NS39 739 aaKnown RBP19.27■□□□□ 0.68
SHMT2-204ENST00000553324 GPRC5DQ9NZD1 345 aa19.27■□□□□ 0.68
SHMT2-204ENST00000553324 ZNF804BA4D1E1 1349 aa19.26■□□□□ 0.67
SHMT2-204ENST00000553324 RPS12P25398 132 aaKnown RBP19.26■□□□□ 0.67
SHMT2-204ENST00000553324 EPS15P42566 896 aa19.26■□□□□ 0.67
SHMT2-204ENST00000553324 GPR101Q96P66 508 aaPredicted RBP19.26■□□□□ 0.67
SHMT2-204ENST00000553324 CNNM1Q9NRU3 951 aa19.26■□□□□ 0.67
SHMT2-204ENST00000553324 DUOX1Q9NRD9 1551 aa19.26■□□□□ 0.67
SHMT2-204ENST00000553324 SCN4AP35499 1836 aa19.25■□□□□ 0.67
SHMT2-204ENST00000553324 COL4A1P02462 1669 aa19.25■□□□□ 0.67
SHMT2-204ENST00000553324 MED23Q9ULK4 1368 aa19.25■□□□□ 0.67
SHMT2-204ENST00000553324 H7C1D1 291 aa19.25■□□□□ 0.67
SHMT2-204ENST00000553324 PSMD14O00487 310 aa19.25■□□□□ 0.67
SHMT2-204ENST00000553324 GMPSP49915 693 aaPredicted RBP19.25■□□□□ 0.67
SHMT2-204ENST00000553324 COA1Q9GZY4 146 aa19.25■□□□□ 0.67
SHMT2-204ENST00000553324 MYH3P11055 1940 aa19.25■□□□□ 0.67
SHMT2-204ENST00000553324 BCAR3O75815 825 aa19.24■□□□□ 0.67
SHMT2-204ENST00000553324 VIL1P09327 827 aaKnown RBP19.24■□□□□ 0.67
SHMT2-204ENST00000553324 UBTFL1P0CB47 393 aaPredicted RBP19.24■□□□□ 0.67
SHMT2-204ENST00000553324 INTS3Q68E01 1043 aaKnown RBP19.24■□□□□ 0.67
SHMT2-204ENST00000553324 ATF7IPQ6VMQ6 1270 aa19.24■□□□□ 0.67
SHMT2-204ENST00000553324 CNOT7Q9UIV1 285 aaKnown RBP19.24■□□□□ 0.67
SHMT2-204ENST00000553324 POTEIP0CG38 1075 aa19.23■□□□□ 0.67
SHMT2-204ENST00000553324 POTEJP0CG39 1038 aa19.23■□□□□ 0.67
SHMT2-204ENST00000553324 FRAT1Q92837 279 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-204ENST00000553324 ZKSCAN2Q63HK3 967 aa19.22■□□□□ 0.67
SHMT2-204ENST00000553324 ZNF594Q96JF6 807 aaPredicted RBP19.22■□□□□ 0.67
SHMT2-204ENST00000553324 USP17L3A6NCW0 530 aa19.21■□□□□ 0.67
SHMT2-204ENST00000553324 USP17L4A6NCW7 530 aa19.21■□□□□ 0.67
SHMT2-204ENST00000553324 GNAI3P08754 354 aa19.21■□□□□ 0.67
SHMT2-204ENST00000553324 C15orf52Q6ZUT6 534 aaKnown RBP19.21■□□□□ 0.67
SHMT2-204ENST00000553324 USP17L1Q7RTZ2 530 aa19.21■□□□□ 0.67
SHMT2-204ENST00000553324 CNTROBQ8N137 903 aa19.21■□□□□ 0.67
SHMT2-204ENST00000553324 ANKRD44Q8N8A2 993 aa19.21■□□□□ 0.67
SHMT2-204ENST00000553324 AGBL3Q8NEM8 1001 aa19.21■□□□□ 0.67
SHMT2-204ENST00000553324 ZC3H15Q8WU90 426 aaKnown RBP19.21■□□□□ 0.67
SHMT2-204ENST00000553324 KCNQ5Q9NR82 932 aa19.21■□□□□ 0.67
SHMT2-204ENST00000553324 ZBTB12Q9Y330 459 aaPredicted RBP19.21■□□□□ 0.67
SHMT2-204ENST00000553324 MROH5Q6ZUA9 1318 aa19.21■□□□□ 0.67
SHMT2-204ENST00000553324 CEP350Q5VT06 3117 aa19.2■□□□□ 0.66
SHMT2-204ENST00000553324 LTBP1Q14766 1721 aa19.2■□□□□ 0.66
SHMT2-204ENST00000553324 WTIPA6NIX2 430 aaPredicted RBP19.2■□□□□ 0.66
SHMT2-204ENST00000553324 TAF5LO75529 589 aa19.2■□□□□ 0.66
SHMT2-204ENST00000553324 TRIM27P14373 513 aa19.2■□□□□ 0.66
SHMT2-204ENST00000553324 RSBN1LQ6PCB5 846 aaPredicted RBP19.2■□□□□ 0.66
SHMT2-204ENST00000553324 RIPOR2Q9Y4F9 1068 aa19.2■□□□□ 0.66
SHMT2-204ENST00000553324 PLIN1O60240 522 aa19.19■□□□□ 0.66
SHMT2-204ENST00000553324 MMP14P50281 582 aa19.19■□□□□ 0.66
SHMT2-204ENST00000553324 UBE4AQ14139 1066 aa19.19■□□□□ 0.66
SHMT2-204ENST00000553324 STRIP1Q5VSL9 837 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 189.6 ms