RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 SAGE1Q9NXZ1 904 aa11.87□□□□□ -0.51
SYNE2-209ENST00000553308 GGA3Q9NZ52 723 aa11.87□□□□□ -0.51
SYNE2-209ENST00000553308 LAS1LQ9Y4W2 734 aaKnown RBP11.87□□□□□ -0.51
SYNE2-209ENST00000553308 SLC10A3P09131 477 aa11.86□□□□□ -0.51
SYNE2-209ENST00000553308 ZNF157P51786 506 aaPredicted RBP11.86□□□□□ -0.51
SYNE2-209ENST00000553308 ANKRD13DQ6ZTN6 518 aa11.86□□□□□ -0.51
SYNE2-209ENST00000553308 TBC1D16Q8TBP0 767 aa11.86□□□□□ -0.51
SYNE2-209ENST00000553308 CCDC102AQ96A19 550 aa11.86□□□□□ -0.51
SYNE2-209ENST00000553308 EYA3Q99504 573 aa11.86□□□□□ -0.51
SYNE2-209ENST00000553308 IRS4O14654 1257 aaPredicted RBP11.85□□□□□ -0.51
SYNE2-209ENST00000553308 TRPA1O75762 1119 aa11.85□□□□□ -0.51
SYNE2-209ENST00000553308 SOX10P56693 466 aa11.85□□□□□ -0.51
SYNE2-209ENST00000553308 SULF1Q8IWU6 871 aa11.85□□□□□ -0.51
SYNE2-209ENST00000553308 RNF186Q9NXI6 227 aa11.85□□□□□ -0.51
SYNE2-209ENST00000553308 TRIM35Q9UPQ4 493 aa11.85□□□□□ -0.51
SYNE2-209ENST00000553308 UFL1O94874 794 aa11.84□□□□□ -0.51
SYNE2-209ENST00000553308 VIL1P09327 827 aaKnown RBP11.84□□□□□ -0.51
SYNE2-209ENST00000553308 RPS8P62241 208 aaKnown RBP11.84□□□□□ -0.51
SYNE2-209ENST00000553308 CDCA5Q96FF9 252 aa11.84□□□□□ -0.51
SYNE2-209ENST00000553308 SEC31BQ9NQW1 1179 aa11.84□□□□□ -0.51
SYNE2-209ENST00000553308 DBF4Q9UBU7 674 aaPredicted RBP11.84□□□□□ -0.51
SYNE2-209ENST00000553308 AKAP11Q9UKA4 1901 aa11.84□□□□□ -0.51
SYNE2-209ENST00000553308 HOXB7P09629 217 aa11.83□□□□□ -0.52
SYNE2-209ENST00000553308 ANGEL2Q5VTE6 544 aaKnown RBP11.83□□□□□ -0.52
SYNE2-209ENST00000553308 RASAL3Q86YV0 1011 aa11.83□□□□□ -0.52
SYNE2-209ENST00000553308 CSRNP1Q96S65 589 aa11.83□□□□□ -0.52
SYNE2-209ENST00000553308 ZC3H12CQ9C0D7 883 aaKnown RBP11.83□□□□□ -0.52
SYNE2-209ENST00000553308 PODXL2Q9NZ53 605 aa11.83□□□□□ -0.52
SYNE2-209ENST00000553308 ZNF609O15014 1411 aa11.83□□□□□ -0.52
SYNE2-209ENST00000553308 PSME4Q14997 1843 aa11.83□□□□□ -0.52
SYNE2-209ENST00000553308 PAPPA2Q9BXP8 1791 aa11.82□□□□□ -0.52
SYNE2-209ENST00000553308 ZNF280AP59817 542 aaPredicted RBP11.82□□□□□ -0.52
SYNE2-209ENST00000553308 TRIM28Q13263 835 aaKnown RBP11.82□□□□□ -0.52
SYNE2-209ENST00000553308 DUSP27Q5VZP5 1158 aa11.82□□□□□ -0.52
SYNE2-209ENST00000553308 HYPKQ9NX55 129 aa11.82□□□□□ -0.52
SYNE2-209ENST00000553308 ANKIB1Q9P2G1 1089 aa11.82□□□□□ -0.52
SYNE2-209ENST00000553308 GGA1Q9UJY5 639 aa11.82□□□□□ -0.52
SYNE2-209ENST00000553308 G3V3G9 751 aa11.81□□□□□ -0.52
SYNE2-209ENST00000553308 SCARF1Q14162 830 aa11.81□□□□□ -0.52
SYNE2-209ENST00000553308 RALBP1Q15311 655 aa11.81□□□□□ -0.52
SYNE2-209ENST00000553308 DCAF8Q5TAQ9 597 aa11.81□□□□□ -0.52
SYNE2-209ENST00000553308 RSBN1LQ6PCB5 846 aaPredicted RBP11.81□□□□□ -0.52
SYNE2-209ENST00000553308 CTU1Q7Z7A3 348 aaKnown RBP11.81□□□□□ -0.52
SYNE2-209ENST00000553308 ZBTB38Q8NAP3 1195 aaPredicted RBP11.81□□□□□ -0.52
SYNE2-209ENST00000553308 RUNDC1Q96C34 613 aa11.81□□□□□ -0.52
SYNE2-209ENST00000553308 CCDC85AQ96PX6 553 aaPredicted RBP11.81□□□□□ -0.52
SYNE2-209ENST00000553308 SCAF8Q9UPN6 1271 aaKnown RBP11.81□□□□□ -0.52
SYNE2-209ENST00000553308 MOB2Q70IA6 237 aa11.8□□□□□ -0.52
SYNE2-209ENST00000553308 RIC3Q7Z5B4 369 aa11.8□□□□□ -0.52
SYNE2-209ENST00000553308 AGBL3Q8NEM8 1001 aa11.8□□□□□ -0.52
SYNE2-209ENST00000553308 JARID2Q92833 1246 aaPredicted RBP11.8□□□□□ -0.52
SYNE2-209ENST00000553308 GMLQ99445 158 aa11.8□□□□□ -0.52
SYNE2-209ENST00000553308 MYD88Q99836 296 aa11.8□□□□□ -0.52
SYNE2-209ENST00000553308 PHAXQ9H814 394 aaKnown RBP11.8□□□□□ -0.52
SYNE2-209ENST00000553308 MBIPQ9NS73 344 aa11.8□□□□□ -0.52
SYNE2-209ENST00000553308 GOLGA2Q08379 1002 aa11.79□□□□□ -0.52
SYNE2-209ENST00000553308 CCDC152Q4G0S7 254 aa11.79□□□□□ -0.52
SYNE2-209ENST00000553308 MYOZ2Q9NPC6 264 aa11.79□□□□□ -0.52
SYNE2-209ENST00000553308 PCDH10Q9P2E7 1040 aa11.79□□□□□ -0.52
SYNE2-209ENST00000553308 MYBBP1AQ9BQG0 1328 aaKnown RBP11.79□□□□□ -0.52
SYNE2-209ENST00000553308 TNRC18O15417 2968 aaPredicted RBP11.79□□□□□ -0.52
SYNE2-209ENST00000553308 WTIPA6NIX2 430 aaPredicted RBP11.78□□□□□ -0.52
SYNE2-209ENST00000553308 PDE8AO60658 829 aa11.78□□□□□ -0.52
SYNE2-209ENST00000553308 PCCAP05165 728 aaPredicted RBP11.78□□□□□ -0.52
SYNE2-209ENST00000553308 USP17L8P0C7I0 530 aa11.78□□□□□ -0.52
SYNE2-209ENST00000553308 FKBP1BP68106 108 aa11.78□□□□□ -0.52
SYNE2-209ENST00000553308 PRAMEF18Q5VWM3 479 aa11.78□□□□□ -0.52
SYNE2-209ENST00000553308 HPS5Q9UPZ3 1129 aa11.78□□□□□ -0.52
SYNE2-209ENST00000553308 ZNF646O15015 1829 aaPredicted RBP11.78□□□□□ -0.52
SYNE2-209ENST00000553308 XDHP47989 1333 aa11.78□□□□□ -0.52
SYNE2-209ENST00000553308 PITPNM2Q9BZ72 1349 aa11.78□□□□□ -0.52
SYNE2-209ENST00000553308 SPEF2Q9C093 1822 aa11.77□□□□□ -0.52
SYNE2-209ENST00000553308 USP17L3A6NCW0 530 aa11.77□□□□□ -0.53
SYNE2-209ENST00000553308 USP17L4A6NCW7 530 aa11.77□□□□□ -0.53
SYNE2-209ENST00000553308 UBE2Q2LH0YL09 131 aa11.77□□□□□ -0.53
SYNE2-209ENST00000553308 ELL2O00472 640 aaPredicted RBP11.77□□□□□ -0.53
SYNE2-209ENST00000553308 TBC1D8O95759 1140 aa11.77□□□□□ -0.53
SYNE2-209ENST00000553308 WDR43Q15061 677 aaKnown RBP eCLIP11.77□□□□□ -0.53
SYNE2-209ENST00000553308 USP17L1Q7RTZ2 530 aa11.77□□□□□ -0.53
SYNE2-209ENST00000553308 ANKRD18AQ8IVF6 992 aa11.77□□□□□ -0.53
SYNE2-209ENST00000553308 REM2Q8IYK8 340 aaPredicted RBP11.77□□□□□ -0.53
SYNE2-209ENST00000553308 CCDC191Q8NCU4 936 aa11.77□□□□□ -0.53
SYNE2-209ENST00000553308 ADAMTS8Q9UP79 889 aa11.77□□□□□ -0.53
SYNE2-209ENST00000553308 ZNF853P0CG23 659 aa11.76□□□□□ -0.53
SYNE2-209ENST00000553308 HSP90B1P14625 803 aaKnown RBP11.76□□□□□ -0.53
SYNE2-209ENST00000553308 ATP2B4P23634 1241 aa11.76□□□□□ -0.53
SYNE2-209ENST00000553308 NBPF9Q3BBW0 867 aa11.76□□□□□ -0.53
SYNE2-209ENST00000553308 PODNQ7Z5L7 613 aa11.76□□□□□ -0.53
SYNE2-209ENST00000553308 ZNF296Q8WUU4 475 aaPredicted RBP11.76□□□□□ -0.53
SYNE2-209ENST00000553308 MXD3Q9BW11 206 aa11.76□□□□□ -0.53
SYNE2-209ENST00000553308 CWC25Q9NXE8 425 aaPredicted RBP11.76□□□□□ -0.53
SYNE2-209ENST00000553308 PDE4DIPQ5VU43 2346 aa11.76□□□□□ -0.53
SYNE2-209ENST00000553308 MKRN3Q13064 507 aaKnown RBP11.75□□□□□ -0.53
SYNE2-209ENST00000553308 TTLL12Q14166 644 aaPredicted RBP11.75□□□□□ -0.53
SYNE2-209ENST00000553308 PRPF38BQ5VTL8 546 aaKnown RBP11.75□□□□□ -0.53
SYNE2-209ENST00000553308 METTL22Q9BUU2 404 aaPredicted RBP11.75□□□□□ -0.53
SYNE2-209ENST00000553308 HDAC9Q9UKV0 1011 aa11.75□□□□□ -0.53
SYNE2-209ENST00000553308 MED23Q9ULK4 1368 aa11.75□□□□□ -0.53
SYNE2-209ENST00000553308 CTSWP56202 376 aa11.74□□□□□ -0.53
SYNE2-209ENST00000553308 DACT2Q5SW24 774 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms