RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ANGEL2Q5VTE6 544 aaKnown RBP17.05■□□□□ 0.32
VPS29-211ENST00000553128 TMC4Q7Z404 712 aa17.05■□□□□ 0.32
VPS29-211ENST00000553128 TSPYL4Q9UJ04 414 aa17.05■□□□□ 0.32
VPS29-211ENST00000553128 SCN9AQ15858 1988 aa17.05■□□□□ 0.32
VPS29-211ENST00000553128 CENPFP49454 3210 aa17.05■□□□□ 0.32
VPS29-211ENST00000553128 DDX60Q8IY21 1712 aaKnown RBP17.04■□□□□ 0.32
VPS29-211ENST00000553128 BRCA2P51587 3418 aa17.04■□□□□ 0.32
VPS29-211ENST00000553128 VIL1P09327 827 aaKnown RBP17.04■□□□□ 0.32
VPS29-211ENST00000553128 HSP90AB3PQ58FF7 597 aa17.04■□□□□ 0.32
VPS29-211ENST00000553128 CCER1Q8TC90 406 aaPredicted RBP17.04■□□□□ 0.32
VPS29-211ENST00000553128 HDAC9Q9UKV0 1011 aa17.04■□□□□ 0.32
VPS29-211ENST00000553128 SCARF1Q14162 830 aa17.03■□□□□ 0.32
VPS29-211ENST00000553128 TBC1D16Q8TBP0 767 aa17.03■□□□□ 0.32
VPS29-211ENST00000553128 FAM89AQ96GI7 184 aa17.03■□□□□ 0.32
VPS29-211ENST00000553128 PKN2Q16513 984 aaKnown RBP17.02■□□□□ 0.32
VPS29-211ENST00000553128 PRAMEF18Q5VWM3 479 aa17.02■□□□□ 0.32
VPS29-211ENST00000553128 UBE2Q2LH0YL09 131 aa17.01■□□□□ 0.31
VPS29-211ENST00000553128 ZNF280AP59817 542 aaPredicted RBP17.01■□□□□ 0.31
VPS29-211ENST00000553128 SF3B3Q15393 1217 aaKnown RBP17.01■□□□□ 0.31
VPS29-211ENST00000553128 RTL5Q5HYW3 569 aaPredicted RBP17.01■□□□□ 0.31
VPS29-211ENST00000553128 REM2Q8IYK8 340 aaPredicted RBP17.01■□□□□ 0.31
VPS29-211ENST00000553128 R3HDMLQ9H3Y0 253 aa17.01■□□□□ 0.31
VPS29-211ENST00000553128 PAPPA2Q9BXP8 1791 aa17.01■□□□□ 0.31
VPS29-211ENST00000553128 GPR25O00155 361 aa17■□□□□ 0.31
VPS29-211ENST00000553128 NEFMP07197 916 aa17■□□□□ 0.31
VPS29-211ENST00000553128 MKRN3Q13064 507 aaKnown RBP17■□□□□ 0.31
VPS29-211ENST00000553128 KRT24Q2M2I5 525 aa17■□□□□ 0.31
VPS29-211ENST00000553128 EYA3Q99504 573 aa17■□□□□ 0.31
VPS29-211ENST00000553128 ATP5J2-PTCD1G3V325 749 aa16.99■□□□□ 0.31
VPS29-211ENST00000553128 HABP4Q5JVS0 413 aaKnown RBP16.99■□□□□ 0.31
VPS29-211ENST00000553128 FBXO46Q6PJ61 603 aaPredicted RBP16.99■□□□□ 0.31
VPS29-211ENST00000553128 FKBP1BP68106 108 aa16.98■□□□□ 0.31
VPS29-211ENST00000553128 RSBN1LQ6PCB5 846 aaPredicted RBP16.98■□□□□ 0.31
VPS29-211ENST00000553128 GMLQ99445 158 aa16.98■□□□□ 0.31
VPS29-211ENST00000553128 ISCA1Q9BUE6 129 aa16.98■□□□□ 0.31
VPS29-211ENST00000553128 ZC3H12CQ9C0D7 883 aaKnown RBP16.98■□□□□ 0.31
VPS29-211ENST00000553128 UFL1O94874 794 aa16.97■□□□□ 0.31
VPS29-211ENST00000553128 TM4SF4P48230 202 aa16.97■□□□□ 0.31
VPS29-211ENST00000553128 RPS8P62241 208 aaKnown RBP16.97■□□□□ 0.31
VPS29-211ENST00000553128 MYOZ2Q9NPC6 264 aa16.97■□□□□ 0.31
VPS29-211ENST00000553128 SEC31BQ9NQW1 1179 aa16.97■□□□□ 0.31
VPS29-211ENST00000553128 AGBL3Q8NEM8 1001 aa16.96■□□□□ 0.31
VPS29-211ENST00000553128 GCC1Q96CN9 775 aa16.96■□□□□ 0.31
VPS29-211ENST00000553128 PODXL2Q9NZ53 605 aa16.96■□□□□ 0.31
VPS29-211ENST00000553128 CHPF2Q9P2E5 772 aa16.96■□□□□ 0.31
VPS29-211ENST00000553128 ZNF609O15014 1411 aa16.96■□□□□ 0.3
VPS29-211ENST00000553128 POTEFA5A3E0 1075 aa16.95■□□□□ 0.3
VPS29-211ENST00000553128 NBPF9Q3BBW0 867 aa16.95■□□□□ 0.3
VPS29-211ENST00000553128 PITPNM2Q9BZ72 1349 aa16.95■□□□□ 0.3
VPS29-211ENST00000553128 MAPK8IP3Q9UPT6 1336 aa16.95■□□□□ 0.3
VPS29-211ENST00000553128 WTIPA6NIX2 430 aaPredicted RBP16.94■□□□□ 0.3
VPS29-211ENST00000553128 G3V3G9 751 aa16.94■□□□□ 0.3
VPS29-211ENST00000553128 IRS4O14654 1257 aaPredicted RBP16.94■□□□□ 0.3
VPS29-211ENST00000553128 FKTNO75072 461 aa16.94■□□□□ 0.3
VPS29-211ENST00000553128 USP17L8P0C7I0 530 aa16.94■□□□□ 0.3
VPS29-211ENST00000553128 RIPK4P57078 832 aa16.94■□□□□ 0.3
VPS29-211ENST00000553128 NOM1Q5C9Z4 860 aaKnown RBP16.94■□□□□ 0.3
VPS29-211ENST00000553128 DCAF8Q5TAQ9 597 aa16.94■□□□□ 0.3
VPS29-211ENST00000553128 PLBD2Q8NHP8 589 aa16.94■□□□□ 0.3
VPS29-211ENST00000553128 ANKIB1Q9P2G1 1089 aa16.94■□□□□ 0.3
VPS29-211ENST00000553128 GGA1Q9UJY5 639 aa16.94■□□□□ 0.3
VPS29-211ENST00000553128 TTLL12Q14166 644 aaPredicted RBP16.93■□□□□ 0.3
VPS29-211ENST00000553128 ANKRD13DQ6ZTN6 518 aa16.93■□□□□ 0.3
VPS29-211ENST00000553128 MXD3Q9BW11 206 aa16.93■□□□□ 0.3
VPS29-211ENST00000553128 PTPN12Q05209 780 aaKnown RBP16.92■□□□□ 0.3
VPS29-211ENST00000553128 BABAM1Q9NWV8 329 aa16.92■□□□□ 0.3
VPS29-211ENST00000553128 SZT2Q5T011 3432 aa16.91■□□□□ 0.3
VPS29-211ENST00000553128 PRKG1Q13976 671 aa16.91■□□□□ 0.3
VPS29-211ENST00000553128 CCDC85AQ96PX6 553 aaPredicted RBP16.91■□□□□ 0.3
VPS29-211ENST00000553128 CFHR5Q9BXR6 569 aa16.91■□□□□ 0.3
VPS29-211ENST00000553128 FZD1Q9UP38 647 aa16.91■□□□□ 0.3
VPS29-211ENST00000553128 PSME4Q14997 1843 aa16.91■□□□□ 0.3
VPS29-211ENST00000553128 USP17L3A6NCW0 530 aa16.9■□□□□ 0.3
VPS29-211ENST00000553128 USP17L4A6NCW7 530 aa16.9■□□□□ 0.3
VPS29-211ENST00000553128 FXR1P51114 621 aaKnown RBP eCLIP16.9■□□□□ 0.3
VPS29-211ENST00000553128 USP17L1Q7RTZ2 530 aa16.9■□□□□ 0.3
VPS29-211ENST00000553128 WNT10BO00744 389 aa16.89■□□□□ 0.29
VPS29-211ENST00000553128 SREBF2Q12772 1141 aa16.89■□□□□ 0.29
VPS29-211ENST00000553128 HDGFL1Q5TGJ6 251 aa16.89■□□□□ 0.29
VPS29-211ENST00000553128 JARID2Q92833 1246 aaPredicted RBP16.89■□□□□ 0.29
VPS29-211ENST00000553128 TRIM17Q9Y577 477 aa16.89■□□□□ 0.29
VPS29-211ENST00000553128 SASH1O94885 1247 aa16.88■□□□□ 0.29
VPS29-211ENST00000553128 TMPOP42166 694 aaKnown RBP16.88■□□□□ 0.29
VPS29-211ENST00000553128 OTOP1Q7RTM1 612 aa16.88■□□□□ 0.29
VPS29-211ENST00000553128 CHL1O00533 1208 aa16.87■□□□□ 0.29
VPS29-211ENST00000553128 TRIM28Q13263 835 aaKnown RBP16.87■□□□□ 0.29
VPS29-211ENST00000553128 DACT2Q5SW24 774 aa16.87■□□□□ 0.29
VPS29-211ENST00000553128 SPRYD7Q5W111 196 aa16.87■□□□□ 0.29
VPS29-211ENST00000553128 PODNQ7Z5L7 613 aa16.87■□□□□ 0.29
VPS29-211ENST00000553128 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.87■□□□□ 0.29
VPS29-211ENST00000553128 ZNF646O15015 1829 aaPredicted RBP16.86■□□□□ 0.29
VPS29-211ENST00000553128 EN2P19622 333 aaPredicted RBP16.86■□□□□ 0.29
VPS29-211ENST00000553128 CAP1Q01518 475 aa16.86■□□□□ 0.29
VPS29-211ENST00000553128 LDLRAD1Q5T700 205 aa16.86■□□□□ 0.29
VPS29-211ENST00000553128 ZBTB38Q8NAP3 1195 aaPredicted RBP16.86■□□□□ 0.29
VPS29-211ENST00000553128 PNNQ9H307 717 aaKnown RBP16.86■□□□□ 0.29
VPS29-211ENST00000553128 LAS1LQ9Y4W2 734 aaKnown RBP16.86■□□□□ 0.29
VPS29-211ENST00000553128 XDHP47989 1333 aa16.86■□□□□ 0.29
VPS29-211ENST00000553128 NEUROD2Q15784 382 aa16.85■□□□□ 0.29
VPS29-211ENST00000553128 DBF4Q9UBU7 674 aaPredicted RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms