RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 SCARF1Q14162 830 aa15.77■□□□□ 0.12
PTCH1-222ENST00000551425 NECTIN2Q92692 538 aa15.77■□□□□ 0.12
PTCH1-222ENST00000551425 TRIM26Q12899 539 aaPredicted RBP15.76■□□□□ 0.11
PTCH1-222ENST00000551425 TCIRG1Q13488 830 aa15.76■□□□□ 0.11
PTCH1-222ENST00000551425 PROSER3Q2NL68 480 aa15.76■□□□□ 0.11
PTCH1-222ENST00000551425 INTS3Q68E01 1043 aaKnown RBP15.76■□□□□ 0.11
PTCH1-222ENST00000551425 AGBL3Q8NEM8 1001 aa15.76■□□□□ 0.11
PTCH1-222ENST00000551425 CELF1Q92879 486 aaKnown RBP15.76■□□□□ 0.11
PTCH1-222ENST00000551425 DDX60Q8IY21 1712 aaKnown RBP15.75■□□□□ 0.11
PTCH1-222ENST00000551425 UBE2Q2LH0YL09 131 aa15.75■□□□□ 0.11
PTCH1-222ENST00000551425 SF3B3Q15393 1217 aaKnown RBP15.75■□□□□ 0.11
PTCH1-222ENST00000551425 MOB2Q70IA6 237 aa15.75■□□□□ 0.11
PTCH1-222ENST00000551425 TBC1D16Q8TBP0 767 aa15.75■□□□□ 0.11
PTCH1-222ENST00000551425 SREBF2Q12772 1141 aa15.74■□□□□ 0.11
PTCH1-222ENST00000551425 COPS6Q7L5N1 327 aa15.74■□□□□ 0.11
PTCH1-222ENST00000551425 ZC3H12CQ9C0D7 883 aaKnown RBP15.74■□□□□ 0.11
PTCH1-222ENST00000551425 MKI67P46013 3256 aaKnown RBP15.74■□□□□ 0.11
PTCH1-222ENST00000551425 TAF1P21675 1872 aa15.74■□□□□ 0.11
PTCH1-222ENST00000551425 HTTP42858 3142 aa15.73■□□□□ 0.11
PTCH1-222ENST00000551425 POTEFA5A3E0 1075 aa15.73■□□□□ 0.11
PTCH1-222ENST00000551425 ANXA1P04083 346 aa15.73■□□□□ 0.11
PTCH1-222ENST00000551425 NEFMP07197 916 aa15.73■□□□□ 0.11
PTCH1-222ENST00000551425 EIF2S2P20042 333 aaKnown RBP15.73■□□□□ 0.11
PTCH1-222ENST00000551425 PPP2R1AP30153 589 aa15.73■□□□□ 0.11
PTCH1-222ENST00000551425 RSBN1LQ6PCB5 846 aaPredicted RBP15.73■□□□□ 0.11
PTCH1-222ENST00000551425 GMLQ99445 158 aa15.73■□□□□ 0.11
PTCH1-222ENST00000551425 R3HDMLQ9H3Y0 253 aa15.73■□□□□ 0.11
PTCH1-222ENST00000551425 MYOZ2Q9NPC6 264 aa15.73■□□□□ 0.11
PTCH1-222ENST00000551425 PODXL2Q9NZ53 605 aa15.73■□□□□ 0.11
PTCH1-222ENST00000551425 XAGE3Q8WTP9 111 aa15.72■□□□□ 0.11
PTCH1-222ENST00000551425 SCN9AQ15858 1988 aa15.71■□□□□ 0.11
PTCH1-222ENST00000551425 USP17L8P0C7I0 530 aa15.71■□□□□ 0.11
PTCH1-222ENST00000551425 AIMP1Q12904 312 aaKnown RBP15.71■□□□□ 0.11
PTCH1-222ENST00000551425 NFE2L2Q16236 605 aa15.71■□□□□ 0.11
PTCH1-222ENST00000551425 G3V3G9 751 aa15.7■□□□□ 0.1
PTCH1-222ENST00000551425 ALDH1A1P00352 501 aa15.7■□□□□ 0.1
PTCH1-222ENST00000551425 RPS8P62241 208 aaKnown RBP15.7■□□□□ 0.1
PTCH1-222ENST00000551425 DCAF8Q5TAQ9 597 aa15.7■□□□□ 0.1
PTCH1-222ENST00000551425 PLEKHF1Q96S99 279 aa15.7■□□□□ 0.1
PTCH1-222ENST00000551425 PCGF6Q9BYE7 350 aa15.7■□□□□ 0.1
PTCH1-222ENST00000551425 TSPYL4Q9UJ04 414 aa15.7■□□□□ 0.1
PTCH1-222ENST00000551425 COL4A1P02462 1669 aa15.7■□□□□ 0.1
PTCH1-222ENST00000551425 MKRN3Q13064 507 aaKnown RBP15.69■□□□□ 0.1
PTCH1-222ENST00000551425 TTLL12Q14166 644 aaPredicted RBP15.69■□□□□ 0.1
PTCH1-222ENST00000551425 PRAMEF18Q5VWM3 479 aa15.69■□□□□ 0.1
PTCH1-222ENST00000551425 OTOP1Q7RTM1 612 aa15.69■□□□□ 0.1
PTCH1-222ENST00000551425 FAM89AQ96GI7 184 aa15.69■□□□□ 0.1
PTCH1-222ENST00000551425 SCAF8Q9UPN6 1271 aaKnown RBP15.69■□□□□ 0.1
PTCH1-222ENST00000551425 TRIM17Q9Y577 477 aa15.69■□□□□ 0.1
PTCH1-222ENST00000551425 DLG5Q8TDM6 1919 aa15.68■□□□□ 0.1
PTCH1-222ENST00000551425 UFL1O94874 794 aa15.68■□□□□ 0.1
PTCH1-222ENST00000551425 NF2P35240 595 aa15.68■□□□□ 0.1
PTCH1-222ENST00000551425 BABAM1Q9NWV8 329 aa15.68■□□□□ 0.1
PTCH1-222ENST00000551425 PTPN12Q05209 780 aaKnown RBP15.67■□□□□ 0.1
PTCH1-222ENST00000551425 SPRYD7Q5W111 196 aa15.67■□□□□ 0.1
PTCH1-222ENST00000551425 ARMC5Q96C12 935 aa15.67■□□□□ 0.1
PTCH1-222ENST00000551425 ISCA1Q9BUE6 129 aa15.67■□□□□ 0.1
PTCH1-222ENST00000551425 GGA1Q9UJY5 639 aa15.67■□□□□ 0.1
PTCH1-222ENST00000551425 COLQQ9Y215 455 aaPredicted RBP15.67■□□□□ 0.1
PTCH1-222ENST00000551425 RBBP6Q7Z6E9 1792 aaKnown RBP15.67■□□□□ 0.1
PTCH1-222ENST00000551425 USP17L3A6NCW0 530 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 USP17L4A6NCW7 530 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 EN2P19622 333 aaPredicted RBP15.66■□□□□ 0.1
PTCH1-222ENST00000551425 INHBEP58166 350 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 NBPF9Q3BBW0 867 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 LDLRAD1Q5T700 205 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 USP17L1Q7RTZ2 530 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 ARMC9Q7Z3E5 817 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 PLBD2Q8NHP8 589 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 ZNF428Q96B54 188 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 ANKIB1Q9P2G1 1089 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 PTPN22Q9Y2R2 807 aa15.66■□□□□ 0.1
PTCH1-222ENST00000551425 MANSC4A6NHS7 340 aaPredicted RBP15.65■□□□□ 0.1
PTCH1-222ENST00000551425 PODNQ7Z5L7 613 aa15.65■□□□□ 0.1
PTCH1-222ENST00000551425 IFNL1Q8IU54 200 aa15.65■□□□□ 0.1
PTCH1-222ENST00000551425 WNT10BO00744 389 aa15.64■□□□□ 0.09
PTCH1-222ENST00000551425 IRS4O14654 1257 aaPredicted RBP15.64■□□□□ 0.09
PTCH1-222ENST00000551425 ERO1AQ96HE7 468 aa15.64■□□□□ 0.09
PTCH1-222ENST00000551425 PSME4Q14997 1843 aa15.64■□□□□ 0.09
PTCH1-222ENST00000551425 TRIM28Q13263 835 aaKnown RBP15.63■□□□□ 0.09
PTCH1-222ENST00000551425 ANKRD13DQ6ZTN6 518 aa15.63■□□□□ 0.09
PTCH1-222ENST00000551425 SEC31BQ9NQW1 1179 aa15.63■□□□□ 0.09
PTCH1-222ENST00000551425 ATP5J2-PTCD1G3V325 749 aa15.62■□□□□ 0.09
PTCH1-222ENST00000551425 MMP14P50281 582 aa15.62■□□□□ 0.09
PTCH1-222ENST00000551425 OGFOD1Q8N543 542 aa15.62■□□□□ 0.09
PTCH1-222ENST00000551425 PNNQ9H307 717 aaKnown RBP15.62■□□□□ 0.09
PTCH1-222ENST00000551425 XDHP47989 1333 aa15.62■□□□□ 0.09
PTCH1-222ENST00000551425 CENPFP49454 3210 aa15.61■□□□□ 0.09
PTCH1-222ENST00000551425 ZBTB48P10074 688 aaPredicted RBP15.61■□□□□ 0.09
PTCH1-222ENST00000551425 RTL5Q5HYW3 569 aaPredicted RBP15.61■□□□□ 0.09
PTCH1-222ENST00000551425 CHPF2Q9P2E5 772 aa15.61■□□□□ 0.09
PTCH1-222ENST00000551425 MAPK8IP3Q9UPT6 1336 aa15.61■□□□□ 0.09
PTCH1-222ENST00000551425 KIAA0100Q14667 2235 aaKnown RBP15.6■□□□□ 0.09
PTCH1-222ENST00000551425 IGF2BP3O00425 579 aaKnown RBP eCLIP15.6■□□□□ 0.09
PTCH1-222ENST00000551425 HSP90B1P14625 803 aaKnown RBP15.6■□□□□ 0.09
PTCH1-222ENST00000551425 ATP2B4P23634 1241 aa15.6■□□□□ 0.09
PTCH1-222ENST00000551425 PRKG1Q13976 671 aa15.6■□□□□ 0.09
PTCH1-222ENST00000551425 DACT2Q5SW24 774 aa15.6■□□□□ 0.09
PTCH1-222ENST00000551425 APOBEC3FQ8IUX4 373 aaKnown RBP15.6■□□□□ 0.09
PTCH1-222ENST00000551425 CD99L2Q8TCZ2 262 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms